mRNA_H-paniculata_contig2253.5997.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2253.5997.1
Unique NamemRNA_H-paniculata_contig2253.5997.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.440e-25
Identity = 59/131 (45.04%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    4 FKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKD-LRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKDVY 393
             K R++  GW  +H IDCG T+ PV R  SQL    IAA  G+ V  +D   AFL   ++EEVY RQ    EI D + G P  MKL KS YGL+QSP+         ++ IGF A +SDP VYV G+   Y
Sbjct:  951 MKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTY 1081          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.950e-24
Identity = 57/131 (43.51%), Postives = 72/131 (54.96%), Query Frame = 1
Query:    4 FKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKD-LRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKDVY 393
             K R+   GW  ++ ID G T+ PV R  SQL    IAA  G+ V  +D   AFL   ++EEVY RQ    EI D + G P  MKL KS YGL+QSP+         ++ IGF A +SDP VYV G+   Y
Sbjct:   55 MKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTY 185          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-21
Identity = 54/120 (45.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    4 FKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKD-LRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDP 360
             K R++  GW  +H IDCG T+ PV R  SQL    IAA  G+ V  +D   AFL  K++EEVY RQ    EI D + G P  MKL KS YGL+QSP+         ++ IG  A +SDP
Sbjct:  387 MKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGSTALLSDP 506          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: UPI001CC1BEB7 (DDE-type integrase/transposase/recombinase n=1 Tax=Corallococcus sp. AS-1-6 TaxID=2874599 RepID=UPI001CC1BEB7)

HSP 1 Score: 93.2 bits (230), Expect = 2.030e-19
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKG 378
            R+K R+V TG+S K+ ID   TF+PV R ES      IAA  G S+  +D + AFLNGKLDEE+Y +Q      K    + +  KL KS YGL+Q+P   ++ ID  L   GF    +D  VYVKG
Sbjct:  973 RYKARLVCTGYSQKYGIDYEETFSPVVRPESIRLLVAIAAQLGGSIHQMDVTTAFLNGKLDEEIYVKQPMGYVQKGFEDKVY--KLKKSLYGLKQAPLCWNKEIDGVLTKFGFTRNKADHGVYVKG 1096          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A8J6CVB0_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CVB0_9ROSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.450e-17
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
            + K R+V  G+S ++ +D   TF PV R ++      +AA   W +  +D   AFLNG L EE+Y  Q    ++K    + + +K  K+ YGL+Q+P+A +  +D  L  +GF  ++S+P++YVK SKD
Sbjct:  195 KHKARLVVKGYSQQYGVDFEVTFAPVARLDTIKLLFALAAQKKWQIHQLDVKSAFLNGFLKEEIYIEQPDGFQVKGQEDKVYRLK--KALYGLKQAPRAWYDRVDASLSKLGFEKSLSEPTLYVKKSKD 321          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A438HQP6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HQP6_VITVI)

HSP 1 Score: 87.0 bits (214), Expect = 2.870e-17
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
            R K R+VA G+S +  +D   TF PV R ++      +AA  GW +  +D   AFLNGKL+EE+Y  Q     +     + +  KL K+ YGL+Q+P+A +  ID      GF+ + S+P++YVK SKD
Sbjct:  762 RLKARLVAKGYSQQPNVDFHETFAPVARLDTIRTIITVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVY--KLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPTLYVK-SKD 887          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A438FVW7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FVW7_VITVI)

HSP 1 Score: 87.0 bits (214), Expect = 2.870e-17
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
            R K R+VA G+S +  +D   TF PV R ++      +AA  GW +  +D   AFLNGKL+EE+Y  Q     +     + +  KL K+ YGL+Q+P+A +  ID      GF+ + S+P++YVK SKD
Sbjct:  650 RLKARLVAKGYSQQPGVDFHETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVY--KLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPTLYVK-SKD 775          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A2G8SFR3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SFR3_9APHY)

HSP 1 Score: 87.0 bits (214), Expect = 2.910e-17
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVK 375
            ++K R+VA G++  H +D   TF PV R  S      IA+ +GW +   DFS AFLN  LDE+VY  Q P  E  D RG+ F +KL K+ YGL+Q  +  + T+   L ++GF    +D  ++ K
Sbjct: 1074 KYKARLVARGFTQVHGVDYTETFAPVARLSSIRTIFAIASRNGWPIDVFDFSSAFLNSTLDEDVYLEQPPHHEFAD-RGK-FVLKLKKALYGLKQGGRKWYETLCAALADLGFGRVEADHGIFFK 1196          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A438H4J7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H4J7_VITVI)

HSP 1 Score: 86.7 bits (213), Expect = 3.870e-17
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
            R K R+VA G+S +  +D   TF PV R ++      +AA  GW +  +D   AFLNGKL+EE+Y  Q     +     + +  KL K+ YGL+Q+P+A +  ID      GF+ + S+P++YVK SKD
Sbjct:  613 RLKARLVAKGYSQQPGVDFHETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVY--KLKKALYGLKQAPRAWYTQIDNYFIENGFIRSKSEPTLYVK-SKD 738          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 86.7 bits (213), Expect = 3.940e-17
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
            R+K R+VA G++  H ID   TF PV +  S      +AA+  W +  +D   AFLNGKL+EEVY +  P  E ++        +L KS YGL+QSP+A        ++ +G+V + +D +++VK SKD
Sbjct:  911 RYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGEN---NDVVCRLNKSLYGLKQSPRAWFTRFSTTMKQLGYVQSQADHTLFVKKSKD 1036          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE4.440e-2545.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVC8_9PHAE5.950e-2443.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCZ9_9PHAE1.300e-2145.00Integrase catalytic domain-containing protein (Fra... [more]
UPI001CC1BEB72.030e-1944.44DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A8J6CVB0_9ROSI1.450e-1735.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438HQP6_VITVI2.870e-1738.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FVW7_VITVI2.870e-1738.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8SFR3_9APHY2.910e-1739.20Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A438H4J7_VITVI3.870e-1738.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T5R4_CAJCA3.940e-1737.98Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2253contigH-paniculata_contig2253:16317..16721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.9
Seed ortholog evalue4.9e-16
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.8957663-CDS-H-paniculata_contig2253:16316..167211622929625.8957663-CDS-H-paniculata_contig2253:16316..16721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2253 16317..16721 +
1691480941.108132-CDS-H-paniculata_contig2253:16316..167211691480941.108132-CDS-H-paniculata_contig2253:16316..16721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2253 16317..16721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2253.5997.1prot_H-paniculata_contig2253.5997.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2253 16317..16721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2253.5997.1

>prot_H-paniculata_contig2253.5997.1 ID=prot_H-paniculata_contig2253.5997.1|Name=mRNA_H-paniculata_contig2253.5997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVD
FSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKAR
HRTIDIDLRNIGFVATVSDPSVYVKGSKDVYIRR*
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mRNA from alignment at H-paniculata_contig2253:16317..16721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2253.5997.1 ID=mRNA_H-paniculata_contig2253.5997.1|Name=mRNA_H-paniculata_contig2253.5997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig2253:16317..16721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTTTAAGGGCCGAGTTGTAGCAACCGGATGGAGCGTGAAACACGTAAT AGACTGTGGAAGCACCTTCACACCAGTCTACAGAACAGAGAGCCAGCTAC CTTCACCTGTCATCGCAGCTTCCCACGGTTGGAGCGTTATCGCCGTGGAC TTCTCACCTGCTTTCCTAAACGGCAAATTAGACGAAGAAGTCTACAGGCG GCAAGTCCCGAGATTGGAGATCAAGGACTTACGGGGGCGACCGTTCACCA TGAAGCTATGCAAATCGACATATGGTCTTCGCCAGTCTCCGAAGGCGAGG CATAGAACCATCGATATAGATCTCCGAAACATTGGCTTTGTTGCTACAGT GAGCGACCCGAGCGTGTACGTCAAAGGTAGCAAGGACGTCTATATCAGGA GATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2253:16317..16721+

>mRNA_H-paniculata_contig2253.5997.1 ID=mRNA_H-paniculata_contig2253.5997.1|Name=mRNA_H-paniculata_contig2253.5997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig2253:16317..16721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTTTAAGGGCCGAGTTGTAGCAACCGGATGGAGCGTGAAACACGTAAT
AGACTGTGGAAGCACCTTCACACCAGTCTACAGAACAGAGAGCCAGCTAC
CTTCACCTGTCATCGCAGCTTCCCACGGTTGGAGCGTTATCGCCGTGGAC
TTCTCACCTGCTTTCCTAAACGGCAAATTAGACGAAGAAGTCTACAGGCG
GCAAGTCCCGAGATTGGAGATCAAGGACTTACGGGGGCGACCGTTCACCA
TGAAGCTATGCAAATCGACATATGGTCTTCGCCAGTCTCCGAAGGCGAGG
CATAGAACCATCGATATAGATCTCCGAAACATTGGCTTTGTTGCTACAGT
GAGCGACCCGAGCGTGTACGTCAAAGGTAGCAAGGACGTCTATATCAGGA
GATAACGCTTTAAGGGCCGAGTTGTAGCAACCGGATGGAGCGTGAAACAC
GTAATAGACTGTGGAAGCACCTTCACACCAGTCTACAGAACAGAGAGCCA
GCTACCTTCACCTGTCATCGCAGCTTCCCACGGTTGGAGCGTTATCGCCG
TGGACTTCTCACCTGCTTTCCTAAACGGCAAATTAGACGAAGAAGTCTAC
AGGCGGCAAGTCCCGAGATTGGAGATCAAGGACTTACGGGGGCGACCGTT
CACCATGAAGCTATGCAAATCGACATATGGTCTTCGCCAGTCTCCGAAGG
CGAGGCATAGAACCATCGATATAGATCTCCGAAACATTGGCTTTGTTGCT
ACAGTGAGCGACCCGAGCGTGTACGTCAAAGGTAGCAAGGACGTCTATAT
CAGGAGATAA
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