mRNA_H-paniculata_contig2247.5979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2247.5979.1
Unique NamemRNA_H-paniculata_contig2247.5979.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5JN68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN68_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.630e-24
Identity = 96/326 (29.45%), Postives = 130/326 (39.88%), Query Frame = 2
Query:  152 LPSSDDAAKMDPFNSKLDK*YARFRKTNRFLIQRRTSVGQKLLQGHEGSHERGC*KFAPPSVQQPRRAHRIGAR-----------------------VYRRCSAS*GTWIKSQSSTR*RWTPCWRRLG*RTRVFLPEATIRSALHLARRYGQWAKGDSVHH---FQRHVVQPLPRRHYGEAACTAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECK-----------------------------------------LWLRENWKGRLGT------SMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSPVGL 910
            +P++    +   F  K +  Y RFRK N F I+RRTSVGQKL +G+EG       K     V+   RA  I AR                       V    S +  TWI+ QSSTR RW P WRR         P   + ++    R     A G  V     F+     P      GE+     +S+  EI  ANR++ GH  NG S+GV E SW D REC                                           W +E W+    T      S+  Q+P +LVLDD++CH++     +LN++ NT  +  P GL
Sbjct:  150 MPANTKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWTTVMKLRETLVK---RAGEIYARRQPPAPDESPIKGEDLTSEQLVSVEAEDSRNSATWIRRQSSTRCRWRPLWRR---------PVRRMLASAQEERVLAVMADGKKVSPRIIFKGMPFIPPTVSGKGESILPRTNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGARASWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGVVSTWCKEAWESTPETXRPNNGSIVQQRPCILVLDDFRCHKDEGFIAALNRDPNTIVIFIPGGL 463          
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.130e-21
Identity = 88/263 (33.46%), Postives = 125/263 (47.53%), Query Frame = 2
Query:  188 FNSKLDK*YARFRKTNRFLIQRRTSVGQKLLQGHEGSHERGC*KFAPPSVQQPRRAHRIGARVYRRCSAS*GTWIKSQSSTR*RWTP--CWRRLG*RTRVFLP---EATIRSALHLARRYGQWAKGDSVHH---FQRHVVQPLPRRHYGEAACTAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECKLWLRENWKGRLGT-SMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSPVGLRLIDMGLELSNRI 949
            F SK    Y RFRK N+F I+RRTSVGQKL +GHEG       K     ++   RA  I A+ Y           +  SS++        +  LG   +  +    +A  +            A G  V     F+     P      G+A    ++SI  E+  ANRS+ G    G S+GV E SW D RECKLW++ +WK R    S+  Q+  +LVLDD+KCH++     +L +EANT  +  P GL  +   L+L +R+
Sbjct:  168 FKSKFKSWYQRFRKRNKFNIRRRTSVGQKLPKGHEGMAWATLMKLRKALLE---RAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHERDAGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVEGMSFGVQEKSWCDLRECKLWIKGSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPL---LQLLDRM 424          
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 5.640e-21
Identity = 88/268 (32.84%), Postives = 123/268 (45.90%), Query Frame = 2
Query:  188 FNSKLDK*YARFRKTNRFLIQRRTSVGQKLLQGHEGSHERGC*KFAPPSVQQPRRAHRIGARVYRRCSAS*GTWIKSQSSTR*RW----------------TPCWRRLG*RT---RVFLPEATIRSALHLARRY----GQWAKGDSVHH---FQRHVVQPLPRRHYGEAACTAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECKLWLRENWKGRLGT-SMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSPVGL 910
            F  K++  Y RFRK N F I+RRTSVGQKL +G+EG       K     V   RRA  I AR  R   A   + IK +  T  +                 TP    +   T   +    +A I +      R+       A G  V     F+     P      G++    ++S+  EI  ANR++  H  NG S+GV E SW D REC  W+  +WK R    S+  Q+P +LVLDD+KCH++     +L ++ANT  ++ P GL
Sbjct:   27 FKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALV---RRAGEIYAR--RHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGL 289          
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.820e-20
Identity = 87/277 (31.41%), Postives = 124/277 (44.77%), Query Frame = 2
Query:  152 LPSSDDAAKMDPFNSKLDK*YARFRKTNRFLIQRRTSVGQKLLQGHEGSHERGC*KFAPPSVQQPRRAHRIGARVYRRCSAS*GTWIKSQSSTR*RW----------------TPCWRRLG*RT---RVFLPEATIRSALHLARRY----GQWAKGDSVHH---FQRHVVQPLPRRHYGEAACTAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECKLWLRENWKGRLGT-SMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSP 901
            +P++    +   F  K +  Y RFRK N F I+RRTSVGQKL +G EG       K     V+   RA  I AR  R   A   + IK +  T  +                 TP    +   T   +    +A I +      R+       A G  V     F+     P      G++    ++S+  EI  ANR++ GH  NG S+GV E SW D REC  W+  +WK R    S+  Q+P +LVLDD+KCH++     +L ++ANT  +  P
Sbjct:   15 MPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVK---RAGEIYAR--RHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIP 286          
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.210e-20
Identity = 83/267 (31.09%), Postives = 120/267 (44.94%), Query Frame = 2
Query:  191 NSKLDK*YARFRKTNRFLIQRRTSVGQKLLQGHEG----------------SHERGC*KFAPPSVQQPRRAHRIGARVYRRCSAS*GTWIKSQSSTR*RWTPCWRRLG*RTRVF---LPEATIRSALHLARRY----GQWAKGDSVHH---FQRHVVQPLPRRHYGEAACTAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECKLWLRENWKGRLGT-SMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSPVGL 910
            NSK    Y RF K N+F I+RRTSVGQKL +GHEG                + E    ++ P   + P R   + +      +      + +   T     P    +   T +      +A I +      R+       A G  V     F+     P      G+A    ++SI  E+  ANRS+ G    G S+GV E SW D RECKLW++++WK R    S+  Q+  +LVLDD+KCH++     +L +EANT  +  P GL
Sbjct:  182 NSKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQT-----PVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGL 443          
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.300e-18
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 2
Query:  608 GEAACTAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECKLWLRENWKGRLGT-SMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSPVGLRLIDMGLELSNRI 949
            G++    ++S+  EI  ANR++ GH  NG S+GV E SW D REC  W   +WK R    S+  Q+P +LVLDD+KCH++     +L ++ANT  +  P GL  +   L+L+ ++
Sbjct:   33 GKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDLNKQM 147          
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.310e-18
Identity = 95/302 (31.46%), Postives = 130/302 (43.05%), Query Frame = 2
Query:  131 REVLNRRLPSSDDAAKMDPFNSK----------LDK*YARFRKTNRFLIQRRTSVGQKLLQGHEGSHERGC*KFAPPSVQQPRRAHRIGARVYRRCSAS*GTWIKSQSSTR*RWT----------------PCWRRLG*RT---RVFLPEATI---------RSALHLARRYGQWAKGDSVHH---FQRHVVQPLPRRHYGEAACTAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECKLWLRENWKGRLGT-SMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSPVGL 910
            REV+N+ L    DA    P N+K           +  Y RFRK N F I+RRTSVGQKL +G+EG       K     V+   RA  I AR  R   A   + IK +     +                  P    +   T   +    +A I         R  L LA      A G  V     F+     P      G++    ++ +  E+  ANR++ GH  NG S+GV E SW D REC  W+  +WK R    S+  Q+P +LVLDD+KCH +     +L ++ANT  +  P GL
Sbjct:  192 REVMNKLLELKPDALGGMPANAKPEEAIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVK---RAGEIYAR--RHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVT----ADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGL 484          
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.630e-18
Identity = 93/305 (30.49%), Postives = 133/305 (43.61%), Query Frame = 2
Query:  131 REVLNRRLPSSDDAAKMDPFNSK----------LDK*YARFRKTNRFLIQRRTSVGQKLLQGHEGSHERGC*KFAPPSVQQPRRAHRIGARVYRRCSAS*GTWIKSQSSTR*R----------------WTPCWRRLG*RTRVFLP---EATIRSALHLARRY----GQWAKGDSVHH---FQRHVVQPLPRRHYGEAACTAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECKLWLRENWK-----GRLGT----SMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSPVGL 910
            REV+N+ L    DA    P N+K           +  Y RFRK N F I+RR SVGQKL +G+EG       K     V+   RA  I AR  R   A   + IK +  T  +                 TP    +   T +      +A I +      R+       A G  V     F+     P      G++    ++S+  E+  ANR++ GH  NG S+GV E SW   +EC  W+  +WK     G +      S+  Q+P +LVLDD+KCH++     +LN++ANT  +  P GL
Sbjct:  152 REVMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVK---RAGEIYAR--RHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGL 451          
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.390e-18
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  608 GEAACTAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECKLWLRENWKGRLGT-SMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSPVGL 910
            G++    ++S+  EI  ANR++ GH  NG S+GV E SW D REC  W+  +WK R    S+  Q+P +LVLDD+KCH++     +L ++ANT  + +P GL
Sbjct:  253 GKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFTPGGL 354          
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Match: A0A6H5KQD4_9PHAE (Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.090e-17
Identity = 84/274 (30.66%), Postives = 112/274 (40.88%), Query Frame = 2
Query:  182 DPFNSKLDK*YARFRKTNRFLIQRRTSVGQKLLQGHEGSHERGC*KFAPPSVQQPRRAHRIGARVYRRCSAS*GTWIKSQSSTR*RWTPCWRRLG*RTRVFLPEATIRSALHLARRYGQWAKGDSVHHFQRHVVQ--------PLPRRHYGEAAC-------------TAESSIK*EISLANRSRCGHLPNGTSYGVDENSWYDHRECKLWLRENWKGRLGTSMFSQQPSVLVLDDYKCHRNHKVQGSLNKEANTDTVLSPVGL----RLIDMG 928
            D FNS     Y RFR    +  +RRTSVGQKL  GHEG       K+   ++Q+ R A R  A          G     ++       PC                   A H     G+    + +      V Q        P+ R    EA                AE +I  E++  NR++ GH   G S+GV ENSW D  E  LW+ E+W+         Q+PS+LVLDD+KCHR+      L K  NT  +L P GL    +L+D G
Sbjct: 1086 DKFNSW----YKRFRARRGYSTRRRTSVGQKLPNGHEGM------KWG--TLQKLRTALRGRA----------GQIFAERN-------PC-------------------ASHELPLDGEELSSEQLESVMEEVFQELGNMDQTPVQREMPVEATLEIRGAKDARISTGAAEGAISAEVAPGNRTKFGHPVGGMSFGVQENSWCDAPEGSLWISESWRLCPNHESIKQRPSILVLDDFKCHRDKAFIDDLGKRCNTSVILIPGGLTPVLQLLDRG 1311          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2247.5979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN68_9PHAE1.630e-2429.45DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEE8_9PHAE2.130e-2133.46DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE5.640e-2132.84DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE2.820e-2031.41DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE8.210e-2031.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8R4_9PHAE1.300e-1839.13DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE3.310e-1831.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE5.630e-1830.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKC9_9PHAE8.390e-1842.16DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQD4_9PHAE1.090e-1730.66Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 131... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2247contigH-paniculata_contig2247:4832..6169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size972
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2247.5979.1prot_H-paniculata_contig2247.5979.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2247 4938..6002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.031987-UTR-H-paniculata_contig2247:4831..49371622929624.031987-UTR-H-paniculata_contig2247:4831..4937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2247 4832..4937 -
1691480940.2806025-UTR-H-paniculata_contig2247:4831..49371691480940.2806025-UTR-H-paniculata_contig2247:4831..4937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2247 4832..4937 -
1622929624.0853202-UTR-H-paniculata_contig2247:6002..61691622929624.0853202-UTR-H-paniculata_contig2247:6002..6169Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2247 6003..6169 -
1691480940.3058636-UTR-H-paniculata_contig2247:6002..61691691480940.3058636-UTR-H-paniculata_contig2247:6002..6169Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2247 6003..6169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.0482547-CDS-H-paniculata_contig2247:4937..53101622929624.0482547-CDS-H-paniculata_contig2247:4937..5310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2247 4938..5310 -
1691480940.288673-CDS-H-paniculata_contig2247:4937..53101691480940.288673-CDS-H-paniculata_contig2247:4937..5310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2247 4938..5310 -
1622929624.066035-CDS-H-paniculata_contig2247:5676..60021622929624.066035-CDS-H-paniculata_contig2247:5676..6002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2247 5677..6002 -
1691480940.2958534-CDS-H-paniculata_contig2247:5676..60021691480940.2958534-CDS-H-paniculata_contig2247:5676..6002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2247 5677..6002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2247.5979.1

>prot_H-paniculata_contig2247.5979.1 ID=prot_H-paniculata_contig2247.5979.1|Name=mRNA_H-paniculata_contig2247.5979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MLPRWTRSTASSTNDTLGFARRTGFLSNAAPASAKSSCRAMRVVMSVGAE
SSRRQAFSSRAERTGSERVCTGDVPRARVRGSNPNPARDDGGHHAGDDWD
EERAYFYRRQRLGALYTWLAVMGNGRKVIPCITFKGTSFNPSHVDITGRP
PAPRRVPLSRRSVWPTAAGVGTFRTARRTEWTKTAGMTIGNASCGCGKTG
RVAWGQACLASNRACWCSTTTSATAITRSRGA*
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mRNA from alignment at H-paniculata_contig2247:4832..6169-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2247.5979.1 ID=mRNA_H-paniculata_contig2247.5979.1|Name=mRNA_H-paniculata_contig2247.5979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig2247:4832..6169- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAACTGCAGCTACACAACTCCACAACAAGCTACAGAGTGCACGCGAC CTCATGTGTGACAACACCGCAGACGGCACCAGCAGCACGGCGGCCCGTCC AACGATGCGAATGGGAACAGAGCGCGTAGGCGGGAGGTCTTGAATCGCAG GCTGCCGAGCAGTGACGATGCTGCCAAGATGGACCCGTTCAACAGCAAGC TCGACAAATGATACGCTCGGTTTCGCAAGACGAACAGGTTTCTTATCCAA CGCCGCACCAGCGTCGGCCAAAAGCTCCTGCAGGGCCATGAGGGTAGTCA TGAGCGTGGGTGCTGAAAGTTCGCGCCGCCAAGCGTTCAGCAGCCGCGCC GAGCGCACAGGATCGGAGCGCGTGTGTACAGGAGATGTTCCGCGAGCTAG GGTACGTGGATCAAATCCCAATCCAGCACGAGATGACGGTGGACACCATG CTGGAGACGACTGGGATGAAGAACGCGCGTATTTCTACCGGAGGTAGGGC CGCTGAATATTGGTACAGTACAGTACCTGTGGTAGAATTGTCAGTTCAGT TGAGGAAAACGTTCGTGTCTGTAGTTTGCAACCTGCGTTTTGTTTTCTTG CCTTTGATATACGGTGCTGTGCTCTACCGTACTGTACTAACCGTAATAAC TGGTTACGATAGGAGGGTATGTACAACTGTCCAATGTACTGCACTCTGCT GTACTGATTGTACACTCCTGACTGTACTGTTTGCTTATGATTTTCTGCTG CACAGACTGTACCTGTGCCGTATTCGAGATTCAAGACTATCGACCATGCT CGATCACAATGAAATTAGTTGACTATGTTCCGTTCATGATGCTTTCTCAA CACTCGCAGGCAACGATTAGGAGCGCTTTACACTTGGCTCGCCGTTATGG GCAATGGGCGAAAGGTGATTCCGTGCATCACTTTCAAAGGCACGTCGTTC AACCCCTCCCACGTAGACATTACGGGGAGGCCGCCTGCACCGCGGAGAGT TCCATTAAGTAGGAGATCAGTCTGGCCAACCGCAGCCGGTGTGGGCACCT TCCGAACGGCACGTCGTACGGAGTGGACGAAAACAGCTGGTATGACCATC GGGAATGCAAGCTGTGGCTGCGGGAAAACTGGAAGGGTCGCCTGGGGACA AGCATGTTTAGCCAGCAACCGAGCGTGTTGGTGCTCGACGACTACAAGTG CCACCGCAATCACAAGGTCCAGGGGAGCTTGAACAAGGAGGCCAACACGG ACACTGTTCTCAGTCCTGTCGGCCTAAGGTTAATTGATATGGGATTAGAA CTTTCGAACAGAATTGGAATTTCTTGCTAACTCTGACA
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Coding sequence (CDS) from alignment at H-paniculata_contig2247:4832..6169-

>mRNA_H-paniculata_contig2247.5979.1 ID=mRNA_H-paniculata_contig2247.5979.1|Name=mRNA_H-paniculata_contig2247.5979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig2247:4832..6169- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCCAAGATGGACCCGTTCAACAGCAAGCTCGACAAATGATACGCT
CGGTTTCGCAAGACGAACAGGTTTCTTATCCAACGCCGCACCAGCGTCGG
CCAAAAGCTCCTGCAGGGCCATGAGGGTAGTCATGAGCGTGGGTGCTGAA
AGTTCGCGCCGCCAAGCGTTCAGCAGCCGCGCCGAGCGCACAGGATCGGA
GCGCGTGTGTACAGGAGATGTTCCGCGAGCTAGGGTACGTGGATCAAATC
CCAATCCAGCACGAGATGACGGTGGACACCATGCTGGAGACGACTGGGAT
GAAGAACGCGCGTATTTCTACCGGAGATGCTGCCAAGATGGACCCGTTCA
ACAGCAAGCTCGACAAATGATACGCTCGGTTTCGCAAGACGAACAGGTTT
CTTATCCAACGCCGCACCAGCGTCGGCCAAAAGCTCCTGCAGGGCCATGA
GGGTAGTCATGAGCGTGGGTGCTGAAAGTTCGCGCCGCCAAGCGTTCAGC
AGCCGCGCCGAGCGCACAGGATCGGAGCGCGTGTGTACAGGAGATGTTCC
GCGAGCTAGGGTACGTGGATCAAATCCCAATCCAGCACGAGATGACGGTG
GACACCATGCTGGAGACGACTGGGATGAAGAACGCGCGTATTTCTACCGG
AGGCAACGATTAGGAGCGCTTTACACTTGGCTCGCCGTTATGGGCAATGG
GCGAAAGGTGATTCCGTGCATCACTTTCAAAGGCACGTCGTTCAACCCCT
CCCACGTAGACATTACGGGGAGGCCGCCTGCACCGCGGAGAGTTCCATTA
AGTAGGAGATCAGTCTGGCCAACCGCAGCCGGTGTGGGCACCTTCCGAAC
GGCACGTCGTACGGAGTGGACGAAAACAGCTGGTATGACCATCGGGAATG
CAAGCTGTGGCTGCGGGAAAACTGGAAGGGTCGCCTGGGGACAAGCATGT
TTAGCCAGCAACCGAGCGTGTTGGTGCTCGACGACTACAAGTGCCACCGC
AATCACAAGGTCCAGGGGAGCTTGAGCAACGATTAGGAGCGCTTTACACT
TGGCTCGCCGTTATGGGCAATGGGCGAAAGGTGATTCCGTGCATCACTTT
CAAAGGCACGTCGTTCAACCCCTCCCACGTAGACATTACGGGGAGGCCGC
CTGCACCGCGGAGAGTTCCATTAAGTAGGAGATCAGTCTGGCCAACCGCA
GCCGGTGTGGGCACCTTCCGAACGGCACGTCGTACGGAGTGGACGAAAAC
AGCTGGTATGACCATCGGGAATGCAAGCTGTGGCTGCGGGAAAACTGGAA
GGGTCGCCTGGGGACAAGCATGTTTAGCCAGCAACCGAGCGTGTTGGTGC
TCGACGACTACAAGTGCCACCGCAATCACAAGGTCCAGGGGAGCTTGA
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