prot_H-paniculata_contig22469.5978.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22469.5978.1
Unique Nameprot_H-paniculata_contig22469.5978.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length133
Homology
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: A0A2H9ZYF2_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZYF2_9ASPA)

HSP 1 Score: 96.3 bits (238), Expect = 1.550e-20
Identity = 56/142 (39.44%), Postives = 86/142 (60.56%), Query Frame = 0
Query:    3 VFLGYDEDSPSYRIYNPENKSVQLSRNVGFDEE---DFETSHRGQPEH--DGTRHMEGLFSAPAEEVI--------GRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAAELDF 131
            +F+GY +++  YR+YNP  K + +SR+V FDE    D++ +   +  H  +  + ME   SA  +           G+AAI +KW+ + K   DGSV +YKARLV +G++Q    D+FET +PVARM T+RT+ SLAA  ++
Sbjct:  505 IFIGYSQETKGYRVYNPITKQLYVSRDVIFDENACWDWKPTCFEEAIHREEWKQSMEEEISAINKNKTWALTDLPEGKAAIGLKWVFRVKYNVDGSVHKYKARLVVKGYAQQAGIDYFETFSPVARMETIRTVLSLAAHYNW 646          
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: A0A6L2NKU3_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NKU3_TANCI)

HSP 1 Score: 89.7 bits (221), Expect = 2.770e-18
Identity = 56/134 (41.79%), Postives = 73/134 (54.48%), Query Frame = 0
Query:    3 VFLGYDEDSPSYRIYNPENKSVQL------SRNVGFDEEDFETSHRGQPEHDGTRHMEGLFSAPAEEVIGRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAAELD 130
            +F+GY E S  YR Y  E     L      SR+  FDEE F +  R +          G+    + ++        KWILKRK+K DGS+ +YKARLV QGF Q    DFF+T APVAR+ST+R + +LAA  D
Sbjct:  219 IFIGYAEHSKCYRFYVIEPNDYVLVNSIIESRDAIFDEERFTSIPRPR----------GMIQPSSSKITEDEVEGCKWILKRKMKVDGSIDKYKARLVIQGFRQKNGIDFFDTYAPVARISTIRLLLALAAIHD 342          
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: A0A5A7SLT1_CUCME (Putative copia-type polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SLT1_CUCME)

HSP 1 Score: 85.1 bits (209), Expect = 1.250e-16
Identity = 54/153 (35.29%), Postives = 79/153 (51.63%), Query Frame = 0
Query:    3 VFLGYDEDSPSYRIYNPENKSVQLSRNVGFDEE-------DFETSHRGQPEHDGTRHMEGLFSAPAEEVI----------------GRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAAELDFE 132
            VF+GYD  S  Y++YNP  K   +SR+V FDEE         E     +P +         +    +E I                G+ A+ +KW+ K K  E G V RYKARLVA+G+SQ +  D+ E  APVAR+ T+R + +LAA+ +++
Sbjct:  599 VFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEEASWNWNDKLEDYKFFEPLNFEEASQNDKWKIAMDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLIALAAQNNWK 751          
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: UPI000E1C253E (uncharacterized protein LOC112939069 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI000E1C253E)

HSP 1 Score: 84.0 bits (206), Expect = 3.160e-16
Identity = 54/155 (34.84%), Postives = 79/155 (50.97%), Query Frame = 0
Query:    3 VFLGYDEDSPSYRIYNPENKSVQLSRNVGFDEEDFETSH-RGQPEHDGTRHM-------------EGLFSAPAEEVI---------------GRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAAE 128
            +F+GY +    YR+YN E K + ++R+V F+E    TS  RG  +H+   +              +    A  +E+                 R  I +KW+ K KL  DGSV +YKARLVA+GF Q    D++ET A VAR+ T+ TI +LAA+
Sbjct:  474 IFVGYADGIKGYRLYNLEKKKIIINRDVIFNENAKSTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAHVARLETIHTIIALAAQ 628          
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: A0A5D3BEI7_CUCME (Putative copia-type polyprotein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BEI7_CUCME)

HSP 1 Score: 82.8 bits (203), Expect = 7.980e-16
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 0
Query:    3 VFLGYDEDSPSYRIYNPENKSVQLSRNVGFDEEDFETSHRGQPEHDGTRHMEGLFSAPA-----------EEVI---------------GRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAAELDFE 132
            VF+GYD  S  Y++YN   K   +SR+V FDEE    S     E +  +  E L    A           EE+                G+ A+ +KW+ K K  E G V RYKARLVA+G+SQ +  D+ E  APVAR+ T+R + +LAA+ +++
Sbjct:  416 VFVGYDASSKGYKLYNLVTKKTIVSRDVVFDEE---ASWNWNDEPEDYKFFEPLNFEEASQNDKWKIAMDEEIKAIKKNDTWKLSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLIALAAQNNWK 568          
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: A0A5S9XFM1_ARATH (Uncharacterized protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9XFM1_ARATH)

HSP 1 Score: 82.8 bits (203), Expect = 8.100e-16
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 0
Query:    3 VFLGYDEDSPSYRIYNPENKSVQLSRNVGFDEEDFETSHRGQPEHDGTRHMEGLFSAPAEEVIGRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAA 127
            VFLGY      Y++ + +   V +SRNV F E  F       P HD T     +   P + V+G      KW+   K   DG+V RYKARLVA+GF+Q E  D+FET +PVA++++++ I  LAA
Sbjct:  618 VFLGYASGYKGYKVLHLDTNLVSVSRNVIFHEHVF-------PFHDIT-----IAHPPGKNVVG-----CKWVFTIKYNSDGTVERYKARLVAKGFTQQEGVDYFETFSPVAKLASVKLILGLAA 725          
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: UPI00155AC425 (uncharacterized protein LOC117909087 n=1 Tax=Vitis riparia TaxID=96939 RepID=UPI00155AC425)

HSP 1 Score: 82.4 bits (202), Expect = 1.080e-15
Identity = 50/132 (37.88%), Postives = 77/132 (58.33%), Query Frame = 0
Query:    1 MGVFLGYDEDSPSYRIYNPENKSVQLSRNVGFDEEDFETSHRGQPEHDGTRHMEGLFSAPAEEVI-GRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAAELDF 131
            +G FL YD+ SP++R +      +Q+ RN+   +E F+         +  R +E   +    ++  G+  +  KWI   K K DG+V RYKARLVA+GF+Q    D+ ET APVA+++T+R + SLAA LD+
Sbjct:  537 IGNFLSYDKLSPTFRAFTSSITEIQVPRNI---QEAFKYPKWKAAVDEEVRELEKNGTWEITDLPRGKKPVGCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLDW 665          
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: A0A2K3M5H6_TRIPR (Retrotransposon protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M5H6_TRIPR)

HSP 1 Score: 82.0 bits (201), Expect = 1.310e-15
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 0
Query:   66 GRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAAELDFE 132
            G+ AI +KW+ K K  EDGSV +YKARLVA+G+SQ    DF ET APVARM T+RT+ +LAA+L+ +
Sbjct:   22 GKEAIGLKWVYKTKYNEDGSVQKYKARLVAKGYSQQPGVDFNETFAPVARMETIRTVLALAAQLELQ 88          
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: A0A2N9EW08_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EW08_FAGSY)

HSP 1 Score: 82.0 bits (201), Expect = 1.480e-15
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 0
Query:   66 GRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAAELDFE 132
            GR  I +KWI K K KEDGS+ ++KARLVA+G++Q  R DF ET APV RM T+RT+ +LAA+++ +
Sbjct:  628 GREVIGLKWIYKTKFKEDGSIQKHKARLVAKGYAQQPRVDFHETFAPVVRMETIRTVLALAAQMELQ 694          
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Match: Q94EV3_MAIZE (Fourf gag/pol protein n=2 Tax=Zea mays TaxID=4577 RepID=Q94EV3_MAIZE)

HSP 1 Score: 82.0 bits (201), Expect = 1.510e-15
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0
Query:   53 MEGLFSAPAEEVIGRAAICM----KWILKRKLKEDGSVARYKARLVAQGFSQMEREDFFETSAPVARMSTLRTIFSLAA 127
            ME + S    EV+ R   C     KWI K+KL+ DG++ RYKARLVA+G++Q E EDFF+T +PVAR++T+RT+ ++AA
Sbjct:  790 MESIMSNGTWEVVDRPYGCQPIGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRTLIAVAA 868          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22469.5978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H9ZYF2_9ASPA1.550e-2039.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2NKU3_TANCI2.770e-1841.79Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetu... [more]
A0A5A7SLT1_CUCME1.250e-1635.29Putative copia-type polyprotein n=1 Tax=Cucumis me... [more]
UPI000E1C253E3.160e-1634.84uncharacterized protein LOC112939069 n=1 Tax=Oryza... [more]
A0A5D3BEI7_CUCME7.980e-1635.90Putative copia-type polyprotein n=2 Tax=Cucumis me... [more]
A0A5S9XFM1_ARATH8.100e-1640.00Uncharacterized protein n=1 Tax=Arabidopsis thalia... [more]
UPI00155AC4251.080e-1537.88uncharacterized protein LOC117909087 n=1 Tax=Vitis... [more]
A0A2K3M5H6_TRIPR1.310e-1558.21Retrotransposon protein n=1 Tax=Trifolium pratense... [more]
A0A2N9EW08_FAGSY1.480e-1555.22Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
Q94EV3_MAIZE1.510e-1550.63Fourf gag/pol protein n=2 Tax=Zea mays TaxID=4577 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 67..130
e-value: 1.8E-14
score: 54.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 73..129
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 73..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22469contigH-paniculata_contig22469:2862..3512 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22469.5978.1mRNA_H-paniculata_contig22469.5978.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22469 2784..3884 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22469.5978.1 ID=prot_H-paniculata_contig22469.5978.1|Name=mRNA_H-paniculata_contig22469.5978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MGVFLGYDEDSPSYRIYNPENKSVQLSRNVGFDEEDFETSHRGQPEHDGT
RHMEGLFSAPAEEVIGRAAICMKWILKRKLKEDGSVARYKARLVAQGFSQ
MEREDFFETSAPVARMSTLRTIFSLAAELDFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like