mRNA_H-paniculata_contig22405.5965.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.220e-46 Identity = 76/140 (54.29%), Postives = 102/140 (72.86%), Query Frame = 1
Query: 4 LQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
LQ RLMVCAHM+EAGHRG AT+ RL+ YC W ME +V +FV+QCLHC+DS++G +VPRPLGE +H T EV+HFD+L++GAS PL + + G Y+LV++DD+S +VWLEP+ CT + A +L WC + G P
Sbjct: 1292 LQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVP 1431
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 167 bits (423), Expect = 1.040e-45 Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 1
Query: 4 LQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
+Q RLM+CAHM+EAGHRGV AT++RL YC W+ M+ +V EFV+QCLHC+DS+SG VPRP GE +H EVLHFD+LH+G S PL + G YLLV++DD+S + W+EP+ CT ++ A +L WC G P
Sbjct: 414 MQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 553
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.710e-45 Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 1
Query: 4 LQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
+Q RLM+CAHM+EAGHRGV AT++RL YC W+ M+ +V EFV+QCLHC+DS+SG VPRP GE +H EVLHFD+LH+G S PL + G YLLV++DD+S + W+EP+ CT ++ A +L WC G P
Sbjct: 1190 MQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 1329
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 118 bits (296), Expect = 6.700e-29 Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 106 MEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
M+ +V EFV+QCLHC+DS+SG VPRP GE +H EVLHFD+LH+G S PL + G YLLV++DD+S + W+EP+ CT ++ A +L WC G P
Sbjct: 1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 106
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE) HSP 1 Score: 108 bits (271), Expect = 4.650e-28 Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 106 MEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPL-KEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
ME +V +FV+ CL+C+DS++G +VP+PLGE H T EV+ FD+L++GAS L K+ G Y+LV++DD+S +VWLEP+ CT ++ + +L WC G P
Sbjct: 1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVP 106
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR) HSP 1 Score: 111 bits (277), Expect = 1.150e-25 Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = 1
Query: 4 LQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFG 414
LQ +MVC+H GHRG+DAT + + W+ ++ +V VR C HC+ +R+G VPRPLG +H EV+H DFL++G K+ YLL+L DD+S Y+WL P+ + T AA + W VFG
Sbjct: 285 LQLSIMVCSHCGSIGHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKK---------YLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFG 412
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A0G4J8M9_PLABS (Integrase catalytic domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J8M9_PLABS) HSP 1 Score: 103 bits (258), Expect = 4.210e-23 Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 1 TLQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGG---CPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
+L+ R++V H AGHR + T + W + ++ +QCLHC+ +R G +VPRPLGE LH + ++VL D+L++ E +RG Y+L+L DD SGYV L PS E T +VAA + +W F P
Sbjct: 604 SLRLRILVIGHCASAGHRASEVTKQMITERFFWTKINQDIEAMCQQCLHCITTRGGKKVPRPLGEALHGHQPFDVLTMDYLYV---------EPVRGADHKYKYILLLKDDFSGYVRLIPSAEATSRVAAEALNQWIADFATP 737
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A2P4WY00_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WY00_9STRA) HSP 1 Score: 103 bits (257), Expect = 6.120e-23 Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 1 TLQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFG 414
+LQ R+ + H AGHRG+D T+ ++ W + +V FVR+CLHC+ G +PRPLGE +H+ E++H+D+L++GAS Y+LV+ DD S YVW + T T ++ W FG
Sbjct: 1287 SLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLYMGAS---------TSDDMYILVIKDDASKYVWFFAVPDATADTTYTCLVEWFAAFG 1415
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6A3N928_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N928_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.480e-22 Identity = 49/138 (35.51%), Postives = 75/138 (54.35%), Query Frame = 1
Query: 1 TLQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFG 414
+LQ R+ + H AGHRG+D T+ ++ W + +V FVR+CLHC+ G +PRPLGE +H+ E++H+D+L +GAS + Y+LV+ DD S YVW + T + T ++ W FG
Sbjct: 618 SLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGASTSDDK---------YILVIKDDASKYVWFFVVPDATADTSYTCLMYWFAAFG 746
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6A4FJL8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FJL8_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.890e-22 Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 1 TLQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFG 414
+LQ R+ + H AGHRG+D T+ ++ W + +V FVR+CLHC+ G +PRPLGE +H+ E++H+D+L +GAS + Y+LV+ DD S YVW + T T ++ W FG
Sbjct: 340 SLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGASTSDDK---------YILVIKDDASKYVWFFVVPDATADTTYTCLMYWFAAFG 468 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22405.5965.1 >prot_H-paniculata_contig22405.5965.1 ID=prot_H-paniculata_contig22405.5965.1|Name=mRNA_H-paniculata_contig22405.5965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp MVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGback to top mRNA from alignment at H-paniculata_contig22405:2491..2916+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22405.5965.1 ID=mRNA_H-paniculata_contig22405.5965.1|Name=mRNA_H-paniculata_contig22405.5965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig22405:2491..2916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22405:2491..2916+ >mRNA_H-paniculata_contig22405.5965.1 ID=mRNA_H-paniculata_contig22405.5965.1|Name=mRNA_H-paniculata_contig22405.5965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig22405:2491..2916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |