mRNA_H-paniculata_contig22405.5965.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22405.5965.1
Unique NamemRNA_H-paniculata_contig22405.5965.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.220e-46
Identity = 76/140 (54.29%), Postives = 102/140 (72.86%), Query Frame = 1
Query:    4 LQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
            LQ RLMVCAHM+EAGHRG  AT+ RL+ YC W  ME +V +FV+QCLHC+DS++G +VPRPLGE +H T   EV+HFD+L++GAS PL +  +    G  Y+LV++DD+S +VWLEP+  CT  + A  +L WC + G P
Sbjct: 1292 LQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVP 1431          
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.040e-45
Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 1
Query:    4 LQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
            +Q RLM+CAHM+EAGHRGV AT++RL  YC W+ M+ +V EFV+QCLHC+DS+SG  VPRP GE +H     EVLHFD+LH+G S PL    +    G  YLLV++DD+S + W+EP+  CT ++ A  +L WC   G P
Sbjct:  414 MQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 553          
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.710e-45
Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 1
Query:    4 LQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
            +Q RLM+CAHM+EAGHRGV AT++RL  YC W+ M+ +V EFV+QCLHC+DS+SG  VPRP GE +H     EVLHFD+LH+G S PL    +    G  YLLV++DD+S + W+EP+  CT ++ A  +L WC   G P
Sbjct: 1190 MQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 1329          
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.700e-29
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  106 MEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
            M+ +V EFV+QCLHC+DS+SG  VPRP GE +H     EVLHFD+LH+G S PL    +    G  YLLV++DD+S + W+EP+  CT ++ A  +L WC   G P
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 106          
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.650e-28
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  106 MEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPL-KEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
            ME +V +FV+ CL+C+DS++G +VP+PLGE  H T   EV+ FD+L++GAS  L K+      G  Y+LV++DD+S +VWLEP+  CT ++ +  +L WC   G P
Sbjct:    1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVP 106          
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 111 bits (277), Expect = 1.150e-25
Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = 1
Query:    4 LQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFG 414
            LQ  +MVC+H    GHRG+DAT + +     W+ ++ +V   VR C HC+ +R+G  VPRPLG  +H     EV+H DFL++G     K+         YLL+L DD+S Y+WL P+ + T   AA  +  W  VFG
Sbjct:  285 LQLSIMVCSHCGSIGHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKK---------YLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFG 412          
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A0G4J8M9_PLABS (Integrase catalytic domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J8M9_PLABS)

HSP 1 Score: 103 bits (258), Expect = 4.210e-23
Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 1
Query:    1 TLQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGG---CPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAP 420
            +L+ R++V  H   AGHR  + T   +     W  +  ++    +QCLHC+ +R G +VPRPLGE LH  + ++VL  D+L++         E +RG      Y+L+L DD SGYV L PS E T +VAA  + +W   F  P
Sbjct:  604 SLRLRILVIGHCASAGHRASEVTKQMITERFFWTKINQDIEAMCQQCLHCITTRGGKKVPRPLGEALHGHQPFDVLTMDYLYV---------EPVRGADHKYKYILLLKDDFSGYVRLIPSAEATSRVAAEALNQWIADFATP 737          
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A2P4WY00_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WY00_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.120e-23
Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 TLQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFG 414
            +LQ R+ +  H   AGHRG+D T+  ++    W  +  +V  FVR+CLHC+    G  +PRPLGE +H+    E++H+D+L++GAS              Y+LV+ DD S YVW     + T     T ++ W   FG
Sbjct: 1287 SLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLYMGAS---------TSDDMYILVIKDDASKYVWFFAVPDATADTTYTCLVEWFAAFG 1415          
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6A3N928_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N928_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.480e-22
Identity = 49/138 (35.51%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    1 TLQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFG 414
            +LQ R+ +  H   AGHRG+D T+  ++    W  +  +V  FVR+CLHC+    G  +PRPLGE +H+    E++H+D+L +GAS    +         Y+LV+ DD S YVW     + T   + T ++ W   FG
Sbjct:  618 SLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGASTSDDK---------YILVIKDDASKYVWFFVVPDATADTSYTCLMYWFAAFG 746          
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Match: A0A6A4FJL8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FJL8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.890e-22
Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 TLQARLMVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSGSRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPSLECTVKVAATTVLRWCTVFG 414
            +LQ R+ +  H   AGHRG+D T+  ++    W  +  +V  FVR+CLHC+    G  +PRPLGE +H+    E++H+D+L +GAS    +         Y+LV+ DD S YVW     + T     T ++ W   FG
Sbjct:  340 SLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGASTSDDK---------YILVIKDDASKYVWFFVVPDATADTTYTCLMYWFAAFG 468          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22405.5965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE1.220e-4654.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE1.040e-4552.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE2.710e-4552.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE6.700e-2949.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9M0_9PHAE4.650e-2845.28Integrase catalytic domain-containing protein n=1 ... [more]
R7Q542_CHOCR1.150e-2540.15Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A0G4J8M9_PLABS4.210e-2337.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P4WY00_9STRA6.120e-2335.51Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6A3N928_9STRA1.480e-2235.51Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A4FJL8_9STRA1.890e-2235.51Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22405contigH-paniculata_contig22405:2491..2916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue4.5e-17
Seed eggNOG ortholog4792.ETI57041
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929622.3044994-UTR-H-paniculata_contig22405:2490..25081622929622.3044994-UTR-H-paniculata_contig22405:2490..2508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22405 2491..2508 +
1691480939.3001773-UTR-H-paniculata_contig22405:2490..25081691480939.3001773-UTR-H-paniculata_contig22405:2490..2508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22405 2491..2508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929622.3186483-CDS-H-paniculata_contig22405:2508..29161622929622.3186483-CDS-H-paniculata_contig22405:2508..2916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22405 2509..2916 +
1691480939.3094885-CDS-H-paniculata_contig22405:2508..29161691480939.3094885-CDS-H-paniculata_contig22405:2508..2916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22405 2509..2916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22405.5965.1prot_H-paniculata_contig22405.5965.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22405 2509..2916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22405.5965.1

>prot_H-paniculata_contig22405.5965.1 ID=prot_H-paniculata_contig22405.5965.1|Name=mRNA_H-paniculata_contig22405.5965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MVCAHMQEAGHRGVDATVNRLAAYCVWAGMEANVAEFVRQCLHCLDSRSG
SRVPRPLGELLHSTEVWEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLL
DDVSGYVWLEPSLECTVKVAATTVLRWCTVFGAPGL
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mRNA from alignment at H-paniculata_contig22405:2491..2916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22405.5965.1 ID=mRNA_H-paniculata_contig22405.5965.1|Name=mRNA_H-paniculata_contig22405.5965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig22405:2491..2916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACTGCAGGCGCGGCTCATGGTATGCGCCCACATGCAGGAGGCGGGTCA CCGGGGCGTGGACGCTACGGTCAACCGCCTTGCGGCGTACTGCGTGTGGG CTGGGATGGAGGCGAACGTGGCGGAGTTTGTCCGGCAGTGTTTGCACTGT TTGGATTCCAGGTCAGGGTCGCGGGTGCCCCGCCCGTTAGGCGAGCTGTT GCACAGCACGGAGGTGTGGGAGGTACTTCACTTCGATTTCCTGCATCTGG GCGCGAGCGACCCGCTCAAGGAGCACGAGGTGATCCGCGGGGGCTGCCCA TACCTTCTCGTGTTACTGGATGACGTCAGCGGTTACGTGTGGCTAGAGCC GTCGCTGGAATGCACGGTGAAAGTGGCTGCCACCACCGTGTTGAGGTGGT GCACGGTGTTTGGAGCGCCTGGGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig22405:2491..2916+

>mRNA_H-paniculata_contig22405.5965.1 ID=mRNA_H-paniculata_contig22405.5965.1|Name=mRNA_H-paniculata_contig22405.5965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig22405:2491..2916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTATGCGCCCACATGCAGGAGGCGGGTCACCGGGGCGTGGACGCTAC
GGTCAACCGCCTTGCGGCGTACTGCGTGTGGGCTGGGATGGAGGCGAACG
TGGCGGAGTTTGTCCGGCAGTGTTTGCACTGTTTGGATTCCAGGTCAGGG
TCGCGGGTGCCCCGCCCGTTAGGCGAGCTGTTGCACAGCACGGAGGTGTG
GGAGGTACTTCACTTCGATTTCCTGCATCTGGGCGCGAGCGACCCGCTCA
AGGAGCACGAGGTGATCCGCGGGGGCTGCCCATACCTTCTCGTGTTACTG
GATGACGTCAGCGGTTACGTGTGGCTAGAGCCGTCGCTGGAATGCACGGT
GAAAGTGGCTGCCACCACCGTGTTGAGGTGGTGCACGGTGTTTGGAGCGC
CTGGGTTGATGGTATGCGCCCACATGCAGGAGGCGGGTCACCGGGGCGTG
GACGCTACGGTCAACCGCCTTGCGGCGTACTGCGTGTGGGCTGGGATGGA
GGCGAACGTGGCGGAGTTTGTCCGGCAGTGTTTGCACTGTTTGGATTCCA
GGTCAGGGTCGCGGGTGCCCCGCCCGTTAGGCGAGCTGTTGCACAGCACG
GAGGTGTGGGAGGTACTTCACTTCGATTTCCTGCATCTGGGCGCGAGCGA
CCCGCTCAAGGAGCACGAGGTGATCCGCGGGGGCTGCCCATACCTTCTCG
TGTTACTGGATGACGTCAGCGGTTACGTGTGGCTAGAGCCGTCGCTGGAA
TGCACGGTGAAAGTGGCTGCCACCACCGTGTTGAGGTGGTGCACGGTGTT
TGGAGCGCCTGGGTTG
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