mRNA_H-paniculata_contig2238.5958.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2238.5958.1
Unique NamemRNA_H-paniculata_contig2238.5958.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: D8LS82_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS82_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 6.890e-94
Identity = 143/224 (63.84%), Postives = 169/224 (75.45%), Query Frame = 3 
Query: 1959 VAHLKDRYRCVTTDLPGFSGDDVSTEKWGYPTDEVVRRLERTVEAAGNGQPVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVGGAMKPGPLGAMCMISYQMWLILAFLAGKPIGNWMAGGFARLIDAPNGRRIAKASSCYPYYQVWKHAIRHG--AGSMMPDCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFL 2624
            V HLKDR+RCVTTDLPGFSGDD   EKWGY T+EVV+R+ERT E  GNGQP++LVAHD+GC YSFKF  KRP+LV KMVAIDVGGAMKP   GAM M++YQ+WL  AFL G+PIG+ +A  FA L+ +P+G RIA+AS+CYPYY  WKH +  G     MMP CPLMF+HG AG+KKIMTFH+ RW EKV  KEGS    + +A HWV  D  + VN  LD FL
Sbjct:   45 VTHLKDRFRCVTTDLPGFSGDDARVEKWGYSTEEVVKRIERTAERVGNGQPIILVAHDFGCMYSFKFEAKRPDLVRKMVAIDVGGAMKPSICGAMLMVTYQLWLCAAFLLGRPIGDGIARSFAWLMGSPSGARIARASTCYPYYHTWKHILCSGEKVRPMMPQCPLMFLHGTAGVKKIMTFHAARWAEKVQEKEGSSSQGIPQASHWVTRDQPEEVNRRLDEFL 268
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: D8LS83_ECTSI (Putative hydrolase of the alpha/beta fold superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS83_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 4.280e-78
Identity = 130/231 (56.28%), Postives = 158/231 (68.40%), Query Frame = 3 
Query: 1953 K*VAHLKDRYRCVTTDLPGFSGD----DVSTEKWGYPTDEVVRRLERTVEAAGNGQPVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVGGAMKPGPLGAMCMISYQMWLILAFLAGKPIGNWMAGGFARLIDAPNGRRIAKASSCYPYYQVWKHAIRHGAGSM---MPDCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFL 2624
            K VAHLKDRYRCVTTDLPGF  D    D   EK GY  DE+VRRLERT+E AGNG+PV L+AHDWGC +SF   + RPELV +MVAIDVGGA++PG    + ++SY +WLI AF  G PIG+ MA  FARL+ AP G R+A A SCYPYY  WK  +    G M   MP  PL+F +G AG K++M FH+D W +KV  KEGS+ V +  + HWV  D  D +N +LD FL
Sbjct:   76 KQVAHLKDRYRCVTTDLPGFGADSDEYDADVEKNGYSIDEIVRRLERTIEKAGNGEPVTLIAHDWGCTFSFLVEKNRPELVKRMVAIDVGGAVEPGLGSLIIIMSYHLWLIAAFRVGGPIGDVMARSFARLVGAPAGARVATARSCYPYYHYWKRKLDKSQGPMGNLMPGAPLLFAYGTAGYKRVMPFHADWWAKKVNDKEGSLSVAMTRSKHWVTVDQPDDLNRKLDAFL 306
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: D8LK39_ECTSI (Short chain dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK39_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 3.130e-74
Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 3 
Query: 1959 VAHLKDRYRCVTTDLPGFSGDD------VSTEKWGYPTDEVVRRLERTVEAAGNGQPVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVGGAMKPGP-LGAMCMISYQMWLILAFLAGKPIGNWMAGGFARLIDAPNGRRIAKASSCYPYYQVWKHAIRH--GAGSMMPDCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWV-HWDAADRVNSELDTFL 2624
            VAHLKDRYRCVTTDLPGFSGD+       S+ KWGY  +EV +RLERT+E  G G+PV +VAHDWGCFY+F   + RP+LV K+VA+DVGG +   P L  + +  YQ +L++AFL G  IG+ MA GFARL  AP    +A+AS CYPY   WK  I+   G G  MP CP++F++G AGMKK+M FH+D W++K++ ++GS VV V EA HW+      D VN+ LDTF 
Sbjct:   36 VAHLKDRYRCVTTDLPGFSGDEDGDGGTASSSKWGYSFEEVAKRLERTIEDVGKGKPVFVVAHDWGCFYAFMLEKNRPDLVKKLVALDVGGGLSFWPSLSLLSIALYQTYLMVAFLIGGRIGDAMARGFARLAGAPAASTVARASVCYPYIHFWKSQIQTCLGMGPFMPRCPVLFMYGSAGMKKLMRFHADWWVDKISKRKGSSVVEVTEASHWLMRGRGGDVVNARLDTFF 267
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: B5JVQ5_9GAMM (Putative hydrolase of the alpha/beta fold superfamily n=1 Tax=gamma proteobacterium HTCC5015 TaxID=391615 RepID=B5JVQ5_9GAMM)

HSP 1 Score: 152 bits (384), Expect = 2.870e-37
Identity = 85/241 (35.27%), Postives = 130/241 (53.94%), Query Frame = 3 
Query: 1959 VAHLKDRYRCVTTDLPGFSGDDVSTEKWGYPTDEVVRRLERTVEAAGNGQ--PVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVGGAMK--PGPLGAMCMISYQMWLILAFLA------GKPIGNWMAGG-------FARLIDAPNGRRIAKASSCYPYYQVWKHAI--RHGAGSMMPDCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFL 2624
            VA+ + R+RC+  +LP F GD V  +  GY  + V+R+L   + A       P+ LV HDWG  Y + FAE+ PE V ++VA+DVG A+K  P P+G + + +YQ+ L  AFL       G  +GN +  G       F      P  R     +  YPYY  WK  +  +      +PD P  F +G  G+KK+M FH + WL+KV+ K  + VV  +++ HW+  D  +++N E+++FL
Sbjct:   47 VAYFEKRFRCLRPELPNF-GDRVE-DPAGYDFESVIRQLGDALGAHSPKLKGPLTLVVHDWGAVYGYLFAERYPERVKRLVALDVGAAIKKQPNPIGYLMVPAYQLTLASAFLISRVPAIGPFVGNLLTKGILAGLGLFGSQYSGPTRRTPLSPALNYPYYYFWKGVLTGQLPLSMKLPDIPFFFAYGTRGLKKVMMFHDEAWLKKVSQKATNKVVAFEQSSHWLMRDEPEKLNREIESFL 285
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: A8FVT6_SHESH (AB hydrolase-1 domain-containing protein n=3 Tax=Shewanella TaxID=22 RepID=A8FVT6_SHESH)

HSP 1 Score: 150 bits (378), Expect = 1.000e-36
Identity = 87/241 (36.10%), Postives = 128/241 (53.11%), Query Frame = 3 
Query: 1926 PDVKFRTMMK*VAHLKDRYRCVTTDLPGFSGDDVSTEKWGYPTDEVVRRLERTVEAAGNGQPVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVGGA-MKPGPLGAMC---MISYQMWLILAFLAGKPIGNWMAGGFARLIDAPNGRRIAKASSCYPYYQVWKHAIRHGAGSMMP---DCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFLG 2627
            PD  +R   K V  LKDRYRCV   LPG+   D S  +  Y   E+V+ +   V+  GNG+PV L+ HDWGCF+ ++F     E V++++ +D+G A  K   L A     M  YQMWL  A+  G  +G+ M    A+L+ AP       +S  Y YY  W H +   +   +P    CPL+F++G     K   FHS  W+EK+A+ + + V P  +  HWV  +A +R N+ +  +LG
Sbjct:   29 PDT-YRVWDKQVEVLKDRYRCVRFTLPGY---DKSKPRRAYDLKEIVQLINTIVDTVGNGKPVTLMLHDWGCFFGYQFYMNYREKVTRIIGVDIGDAGSKEHVLSAKVKAFMFGYQMWLAAAWKIGGKLGDAMTRKMAKLLHAPGEPGSITSSMTYSYYWKWSHVLTGRSLDHLPLEITCPLLFMYGE---NKPGMFHSTPWVEKIASDKRNRVEPF-QTRHWVMIEAPERFNNIMLDWLG 261
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: A0A0Q7EQZ2_9BURK (Alpha/beta hydrolase n=1 Tax=Massilia sp. Root418 TaxID=1736532 RepID=A0A0Q7EQZ2_9BURK)

HSP 1 Score: 146 bits (368), Expect = 2.600e-35
Identity = 85/233 (36.48%), Postives = 124/233 (53.22%), Query Frame = 3 
Query: 1959 VAHLKDRYRCVTTDLPGFSGDDVSTEKWGYPTDEVVRRLERTVEAAGNGQPVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVGGAMKPG-----PLGA-MCMISYQMWLILAFLAGKPIGNWMAGGFARLIDAPNGRRIAKASSCYPYYQVWKHAI---RHGAGSMMPDCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFLGG 2630
            VA L  +YRC    LPGF   D+   +   P DE+   +ER    A   +PV+L+ HDWG  +  +FA++ P+LVS++VA+DVG A+ P       LGA + + SYQ+WL LA+  G  +G+ M+   A+ +  P       +   YPYY  W  A    RH A SM P CP +FI+G+   +K   FHS  W +K+ A  GS  + + E  HW   + A   N+ +  +L G
Sbjct:   46 VAALSGQYRCARFTLPGF---DLGKPRRPCPLDEMTSLIERIARLASPDRPVILMQHDWGSIFGTEFAQRHPQLVSRIVAVDVGDALTPEYRATLGLGAKLAIASYQLWLALAWRIGGKLGDGMSRRMAKAMRVPVEAADIGSQMNYPYYIAWTGAYGSYRHAATSM-PGCPTLFIYGK---RKPFMFHSGAWADKLNATPGSRAIGM-ETGHWPMREQAAEFNAAVQNWLAG 270
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: A0A4P7BMD0_9BURK (Alpha/beta hydrolase n=2 Tax=Massilia plicata TaxID=321984 RepID=A0A4P7BMD0_9BURK)

HSP 1 Score: 140 bits (353), Expect = 1.520e-33
Identity = 78/231 (33.77%), Postives = 118/231 (51.08%), Query Frame = 3 
Query: 1959 VAHLKDRYRCVTTDLPGFSGDDVSTEKWGYPTDEVVRRLERTVEAAGNGQPVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVGGAMK---------PGPLGAMCMISYQMWLILAFLAGKPIGNWMAGGFARLIDAPNGRRIAKASSCYPYYQVWKHAIRHGAGSMMPDCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFL 2624
            VA  K  YRCV    PGF   +    K  +P D ++   E  V     G+PV+L+ HDWGC + ++FA + PELVS++V +D+G A           P  LG   ++SYQ+WL  A+  G  +G  M+   ARL+  P        +  YPY+ +W    +  A +  P CP++FI+G+   +K   FHS +W   + A+ GS  + +D ADHW      D  N+ +  +L
Sbjct:   16 VAAFKANYRCVRFTWPGF---EPGAPKQEHPLDALIALCEAVVREVSPGKPVILMVHDWGCLFGYQFATRHPELVSRVVGVDIGDASSRDFRKATTVPALLG---IVSYQLWLAGAWRVGGGVGENMSRWLARLMGVPTPVDSITVAKNYPYFSMWTGKYK-AAKTFRPTCPMLFIYGK---RKPFMFHSPQWEAMLNARPGSQAIGMD-ADHWPMLRRPDEFNAIVLRWL 235
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: A0A7W2ENV0_9BURK (Alpha/beta fold hydrolase n=2 Tax=unclassified Duganella TaxID=2636909 RepID=A0A7W2ENV0_9BURK)

HSP 1 Score: 141 bits (355), Expect = 1.560e-33
Identity = 80/230 (34.78%), Postives = 119/230 (51.74%), Query Frame = 3 
Query: 1959 VAHLKDRYRCVTTDLPGFSGDDVSTEKWGYPTDEVVRRLERTVEAAGNGQPVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVGGA-----MKPGPLGAMCMIS-YQMWLILAFLAGKPIGNWMAGGFARLIDAPNGRRIAKASSCYPYYQVWK--HAIRHGAGSMMPDCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFL 2624
            VA L  RYRCV   LPGF   D +  +  Y  +E++   ER V     G+ V L+ HDWGC + ++F  + PELVS++V +D+G       +K   LGA  M+  YQ+WL +A+  G  +G+WM     RL+  P   R   ++  +PYY  W   H         +P CP++FI+G    +K   FHS  W E +A + G  V+   +ADHW      +  N+ + T+L
Sbjct:   39 VAALAPRYRCVRFTLPGF---DCAKPRRAYGLNEMLAIFERIVTQVSPGRKVTLMLHDWGCVFGYQFYMRHPELVSRIVGVDIGDVESKAYVKSLSLGAKLMVLWYQLWLAVAWKVGGGLGDWMTHFMVRLMKVPADPRYITSAMNFPYYITWTGAHGSYRDRQRFVPACPMLFIYGS---RKPFMFHSRPWAEALATQPGCRVLGF-KADHWPMAREPEAFNAAVATWL 261
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: A0A4P6L6Q4_9BURK (Alpha/beta hydrolase n=2 Tax=Massilia lutea TaxID=321985 RepID=A0A4P6L6Q4_9BURK)

HSP 1 Score: 139 bits (350), Expect = 3.830e-33
Identity = 77/231 (33.33%), Postives = 114/231 (49.35%), Query Frame = 3 
Query: 1959 VAHLKDRYRCVTTDLPGFSGDDVSTEKWGYPTDEVVRRLERTVEAAGNGQPVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVG-GAMKP-----GPLGAMCMISYQMWLILAFLAGKPIGNWMAGGFARLIDAPNGRRIAKASSCYPYYQVWKHAIRHGAGSMMPDCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFLGGS 2633
            VA L   +RCV    PGF   +    +  +  DE++   E+ V      +PV L+ HDWGC + ++FA++ PELV++++ +D+G G  K      G  G + +++YQ+WL  A+  G  IG  M   FA+    P           YPYY  W    + GA    P CP++FI+G    +K   FHS  W  ++  K GS VV +D  DHW      D  N  +  +LG S
Sbjct:   16 VAALSPYFRCVRFTWPGF---ETGAPRKEHSLDELIALCEQVVRETSPDRPVTLLVHDWGCLFGYQFAQRHPELVARIIGVDIGDGGSKAHLDEIGLKGKLGIVAYQLWLAAAWKIGGGIGESMTRSFAKKARVPVAPEALTPEKNYPYYSTWTGKYK-GAKPFRPTCPVLFIYGT---RKPFMFHSSAWTAELQGKPGSKVVAMD-TDHWPMLRQPDAFNRIVLDWLGAS 238
[Close]
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Match: A0A1I4UAX0_9BURK (Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax=Rugamonas rubra TaxID=758825 RepID=A0A1I4UAX0_9BURK)

HSP 1 Score: 139 bits (350), Expect = 7.040e-33
Identity = 75/233 (32.19%), Postives = 123/233 (52.79%), Query Frame = 3 
Query: 1959 VAHLKDRYRCVTTDLPGFSGDDVSTEKWGYPTDEVVRRLERTVEAAGNGQPVLLVAHDWGCFYSFKFAEKRPELVSKMVAIDVGGAMKPG-----PLGAMCMIS-YQMWLILAFLAGKPIGNWMAGGFARLIDAPNGRRIAKASSCYPYYQVWK--HAIRHGAGSMMPDCPLMFIHGRAGMKKIMTFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFLGGS 2633
            VA LK RYRCV   LPGF   D++  +  Y  DE +  +E+ V     G+ V L+ HDWGC + ++F  + P+LVS++V +++G A  P       LGA  M++ YQ+ L  A+  G PIG+ +     +++ AP+ ++   ++  +PYY VW   +  +      +P CP+++I+G    +K   FHS +W E +A +  S V    +  HWV  +     N  +  +L  S
Sbjct:   39 VAALKGRYRCVRFTLPGF---DIARPRRAYSLDETLAIIEKIVNQVSPGRKVTLMLHDWGCVFGYQFYMRHPQLVSRIVGVEIGDAQSPAHVKSLTLGAKLMVAWYQLTLAAAWKIGGPIGDGLTNFMLKVLRAPSPKQYISSAMNFPYYLVWTGGYGGKGNRTEFVPSCPMLYIYGT---RKPFHFHSKQWTEWLAGQPSSQVEAF-KTSHWVMLEQPQEFNHTVLAWLDAS 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2238.5958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS82_ECTSI6.890e-9463.84AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
D8LS83_ECTSI4.280e-7856.28Putative hydrolase of the alpha/beta fold superfam... [more]
D8LK39_ECTSI3.130e-7453.45Short chain dehydrogenase n=1 Tax=Ectocarpus silic... [more]
B5JVQ5_9GAMM2.870e-3735.27Putative hydrolase of the alpha/beta fold superfam... [more]
A8FVT6_SHESH1.000e-3636.10AB hydrolase-1 domain-containing protein n=3 Tax=S... [more]
A0A0Q7EQZ2_9BURK2.600e-3536.48Alpha/beta hydrolase n=1 Tax=Massilia sp. Root418 ... [more]
A0A4P7BMD0_9BURK1.520e-3333.77Alpha/beta hydrolase n=2 Tax=Massilia plicata TaxI... [more]
A0A7W2ENV0_9BURK1.560e-3334.78Alpha/beta fold hydrolase n=2 Tax=unclassified Dug... [more]
A0A4P6L6Q4_9BURK3.830e-3333.33Alpha/beta hydrolase n=2 Tax=Massilia lutea TaxID=... [more]
A0A1I4UAX0_9BURK7.040e-3332.19Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2238contigH-paniculata_contig2238:15866..22069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue4e-43
Seed eggNOG ortholog2880.D8LS82
Preferred nameEPHX4
KEGG rclassRC01447,RC01728,RC01764,RC02528
KEGG koko:K01253,ko:K22368,ko:K22369
KEGG ReactionR07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443
KEGG Pathwayko00980,ko04976,ko05204,map00980,map04976,map05204
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004301,GO:0005575,GO:0005622,GO:0005623,GO:0006629,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016801,GO:0016803,GO:0018904,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0097176,GO:1901360
EggNOG free text desc.10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity
EggNOG OGsCOG0596@1,KOG4178@2759
EC3.3.2.10,3.3.2.9
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons3
Model size3704
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2238.5958.1prot_H-paniculata_contig2238.5958.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2238 16934..18175 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.1902401-UTR-H-paniculata_contig2238:15865..169331622929621.1902401-UTR-H-paniculata_contig2238:15865..16933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 15866..16933 -
1691480938.6475444-UTR-H-paniculata_contig2238:15865..169331691480938.6475444-UTR-H-paniculata_contig2238:15865..16933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 15866..16933 -
1622929621.240845-UTR-H-paniculata_contig2238:18175..182241622929621.240845-UTR-H-paniculata_contig2238:18175..18224Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 18176..18224 -
1691480938.6900034-UTR-H-paniculata_contig2238:18175..182241691480938.6900034-UTR-H-paniculata_contig2238:18175..18224Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 18176..18224 -
1622929621.2552497-UTR-H-paniculata_contig2238:19929..220691622929621.2552497-UTR-H-paniculata_contig2238:19929..22069Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 19930..22069 -
1691480938.7023585-UTR-H-paniculata_contig2238:19929..220691691480938.7023585-UTR-H-paniculata_contig2238:19929..22069Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 19930..22069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.2066941-CDS-H-paniculata_contig2238:16933..170801622929621.2066941-CDS-H-paniculata_contig2238:16933..17080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2238 16934..17080 -
1691480938.660709-CDS-H-paniculata_contig2238:16933..170801691480938.660709-CDS-H-paniculata_contig2238:16933..17080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2238 16934..17080 -
1622929621.2245893-CDS-H-paniculata_contig2238:17875..181751622929621.2245893-CDS-H-paniculata_contig2238:17875..18175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2238 17876..18175 -
1691480938.6779876-CDS-H-paniculata_contig2238:17875..181751691480938.6779876-CDS-H-paniculata_contig2238:17875..18175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2238 17876..18175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2238.5958.1

>prot_H-paniculata_contig2238.5958.1 ID=prot_H-paniculata_contig2238.5958.1|Name=mRNA_H-paniculata_contig2238.5958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MVAIDVGGAMKPGPLGAMCMISYQMWLILAFLAGKPIGNWMAGGFARLID
APNGRRIAKASSCYPYYQVWKHAIRHGAGSMMPDCPLMFIHGRAGMKKIM
TFHSDRWLEKVAAKEGSVVVPVDEADHWVHWDAADRVNSELDTFLGGS*
back to top

mRNA from alignment at H-paniculata_contig2238:15866..22069-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2238.5958.1 ID=mRNA_H-paniculata_contig2238.5958.1|Name=mRNA_H-paniculata_contig2238.5958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6204bp|location=Sequence derived from alignment at H-paniculata_contig2238:15866..22069- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTTGCACCCACTAAAAGACCTCTGACTAGACTTCCAGTTATGCTCAG
TTCATGAGCTACCCTACCCGTTCGGGCGTAGGTCCGTGACATCATCACCT
GCTCGCCGTAACAGCCAACAACCAACAGTAAAATCGTTAGTTCCGCCATA
CGCCGTCCGAGTGAAAACATGAAGACTTTCGGGTTGAAGTTGACATATCC
ACTAGTATCTTGAGGTTGGCAAAACGCCATTATGCGGCAAATAGGCGCTT
CGTTGTTTACAAGAGAAGAGAGCAAGTAAAACGGTTGTGCTGTAACTAAT
GACTGCGAAGTAAATTCACCACCGCACCAGTCAGTTAGGAAAAGAAAATG
CAGCGAAAAATGGATAAACATGCGTATGTTATTTGACCGATGCAGCAGTA
GATACGTTGAGGACCACAGCCGTCTCAGAAGAAGCTTTTTTTGAATTTAC
GACTGACGTACTGACATGGCTCAAATACCCAGTGCTGTAGTCTTGGGGAA
GATTCATTTTCCATCCCCTATGTGCGCCACTTGGTTACTTCAAATTCAAG
GTTTTTGGTGAAGCGGCCCACACAACCTTGGTTATCCTCCGCAATTTTTC
TGCGTTGATGTAAACGCAATTCTGCAGTGCAGTATGCGGTCAGTTACTTC
AATAACTGACCCCGCCAAAATGTCACGCCAGGAATAACAAAGTTAGCCAT
ACCTGTAGCGATCAAGAACTATCTGAGAGAATGGAACGAAGTGGCTTGTA
AGGTTACCGGCGGTGCCGAAATTGAATTGCATTCTACTTTCATTATCAGC
TTCTCCATAAACGGGATTGGAAAGAAAGATTGTATCTTCTAATGAGTGGT
GGAATTTCGCGCACGTCTTGCACCAGTGATGGTCACCCACATCTCTCGCT
GCACTCCGACCTCTTTTGTTGTAAAACAATCGAAAGTATTCGCAACTTTC
GGAGCCCCTTAGTCCACTGTTCAAAACTGCTGCTTCTATGGACAAGGCTG
GCTCCTTCCTGGTGCCATCCCAGCGTGCCAGACGCTGAACTTGCAGAACA
CCATCTCTTTGCGCTCTACCAGCTCTTCAAGATCTGAAACGTCGTTATAT
CCGTGCGTGCTCTCCGCGTTTATTTTGCGATACTACAATTATACAAAATT
TGTCCATACCTTCGCTCTAGAGAACTTGTGGCCGAGCGAAGTTAACCCAT
TGCTCTACTAAATAGTCAACAATAGAGAACGTTGTTCCAGAAAGATCAAG
CCTAATTACCGACTACGATAGGTACTAGTCATGTTATGTCATAACCGCCA
CAACTGACTGTGACAAACCACCTCCTGCTGTGTCTGTGGGCACATTTAGC
GGCTATTGTTCGCTGCGGAAATCTCGGGATAATATGCGGGTGCCTATCGG
CTCTTGTATGCCACAAATGTGGTGGTGGATGCAGAAGTATACGAACTGTT
TGTACTCCATGCAGCAGTGCTTTCTGTATCTTGTCGCCGTGCTTAAGTCT
CGACATCATGCTGTTTGCGCTATGCAGCTGACTGCCACCGCTCAAGGGAT
CCAATGTGTGTACAACTGTACCACTTTTACATCAAGTGCACGGCGCTCCA
GCTGCTGTGCCAGCCCTTGACGTACATGATTTTTGTCAAAATTCCCGATA
CCAGCTTATAACCAAGGCAATCCCGCTGTACTATTTTTCATATGTTTGTC
GACATACGGGTCTGATCTTAACCCAGTCAAAGCAATTATGAACGTCGACA
TTCGGTACCACTCTCTCTGCCAACCCCCCCCCCCCCCCTCCGTATGCTTG
TTCGACGCGGGACTGTCAAAAATCGCACGTAAAATTGTTTCGAAATGCAG
ACTTGCTGATCTGCAAGGGTTAAATGGGCGAAATTGCACGGCACGCATGT
CATACTTCGACCGTCTTGATACTGTCCTGACGTCAAATTCCGCACGATGA
TGAAGTAGGTTGCCCACCTGAAGGACCGCTATCGGTGCGTCACGACAGAT
CTTCCGGGATTTTCGGGGGACGATGTGAGCACAGAGAAATGGGGGTACCC
TACCGATGAAGTAGTGCGGAGACTGGAGAGGACAGTCGAAGCTGCCGGAA
ACGGTCAGCCGGTGCTGCTCGTAGCGCATGACTGGGGATGGTGAGATGCG
GAAAAATATCAGAAGCGTTCGTTCAAAGAGGCTCAAAAAGAGACTGTGGT
ACTTCCAAAGTAGGCCTTCGATTATTGTCTACGAGTAAATTTTATAGAAA
TATTTTGCATGGACGACTGTCCGAAATTCCATGGAATCGTCGTTCTCCAA
ATTTGTGCAAAATGTCGGTCTTCCTCCCTACCCATGCGCACGCGGTAAGC
TGTGAGCAAGTGAGCGCTCATCTCTGATTTTTTCTGCCTCTAGGTGCCAG
CGAGCAGTTGTCTCACCCCTCTTCCGCTCCTCGCGCGTGACCGACTAGAT
ATTCCATGCGGGTGGTTGTCCGCGTAAAATTTGTGGTGCCACTGTTAGGA
AAAGCGATATGGGTGATCTCCGTCGGAGATTGTGTTCCTTGAAAACACAA
AACTTTGTGCGGCTCAACCCCGATTGACCAATCAAATGCAGCCATGAACA
TATTTGAATTCAAACGCTTATCTCATTTTTTTGCCATCCTTACACAGAAT
AGCCAATAGTCATCACGCGACTGCGGCACGAACATGAAAGTAGGCGCTCC
TGCGCTGCGCGGCTGTGATACCCACGAACACATATAGGCAGACCGACAGA
CAGTACAGACAACAGTCAGTAGTACAACCGTGTCACGATAAGATGAAACA
TTCTTCTCCGTCACGATCTGAACCCTTCCTAGTCACTCCTGCTGAGCTGG
CAAGGGTTTCGTACGGCACTGACTGTTGTTGTCCTGGCTCGGTCCTGGGT
CTTTAATCGACCGTGTGAACTCACTCTTTTGGAGCCTTTCTTGCCCAGCT
TGGAAATATTCCAGCGTTTGAACTACTGGGACGCGTCGAGCGCCGATTGG
TAGGTACGTCATGTGCGCGAAAACTCCGGCTAGGAAAGCCATAGATCAGA
TTTTCGAGCGCGTTGAGAAAATTCGGAGCGCAGGGGCATTCCTCTAAAAA
AATAGTGTAAAATCGACTTTTCTTAATTTTTTCCTGACGCACCCAAGATT
CTGATAAGGCTTTCTTAGCTTTTTCGTGTAGAAATGTAGTGGTACTGGTA
TGAACGCTGGAATCGTTGTAAGTCAAAAGATGAACTGTTTATAAAAATGC
GTACAAATATCAAAACAACTCATTCTAAGTAGGCGTCGGCATGACGCCAG
GAAAACACGTTTTTTTTTTTTTTCGGAACGCGGAATAACAACAATCAGCC
CAGATTGCTTCTTCTAACTGTGCAGTCATCGTGCGATGGGAGTGGTGCTG
TAAACAGCAAACTGCGCTCGGAATGAAAACATCAAAGAAGATGTACAGGC
GTGCAAGTGGCGGTCAGTTCTTACACCCCCCCCGTCCCCTCGCCCCAACA
AATATGAATACATCAATGAACACCCATTTCTGCAAACGCTGAATTCGTTC
ATGAAGGTCGCTCGAAAAACTGGAGATGTTTGTTTACCTTTTTTCGACAA
TATTTTTTTATTATTGAAGTTAAAGTTATTTGATGACGGCAGGACATCCT
GCTACCGGCGAGGGGCGTTGTTTGGGTGTAGTCGGGCCGAAAGTGCTGCA
AAACGTGTCGAGTGTGGGGAATGTGGAGACTTGATGCTGTATCCAAACAC
ATATCCCCTACTTCGTATGTGCATACTGGATAATCTACCGCCCTCACTCG
CTCGGTGACCCATTTTTTCCTTCCCTCCGTTTTTTCTTCACTCAGCTTTT
ATTCATTTAAGTTCGCGGAGAAGCGACCTGAACTCGTAAGCAAGATGGTG
GCGATAGACGTCGGTGGTGCCATGAAGCCGGGGCCGCTCGGTGCGATGTG
CATGATCTCGTACCAGATGTGGCTGATTTTGGCATTCCTGGCCGGGAAGC
CCATCGGCAATTGGATGGCGGGAGGCTTTGCAAGGCTCATAGATGCGCCC
AACGGCAGGCGTATCGCGAAGGCATCTTCTTGCTACCCGTACTACCAGGT
GTGGAAACACGCAATCAGGCACGGAGCCGGAAGTATGATGCCAGACTGTC
CCCTCATGTTTATTCACGGCCGCGCGGGTATGAAGAAAATCATGGTGAGT
GTTCGAGAGAGAGGGGGCAGGGGGAGAAAGAGGGGACGAGGGAACGTGAA
CATGAAATAGTTTGCACATGAATGATTGACACCCCGAAAATAACCCCTCT
GAGATTCTAATTCCGAAGTCAACTCCCTTGCCCCAGTTTGTAGAACTATG
TCTCCAACGCTCATACGATGGCTCCATTGTACCCATGTTGATGTTACGCA
GCTGACTTCAAGCTTCGGCTGTGTACACCTATCAGCAAAATTAGTTGAAT
AAGGGGGGGCAGCCAATGGGAATCAATCTTTATCATGCTGACCTTATGTG
ATTGGAGATGAGCAAAAAAAGTATAATAGGGTGAACCTTGGGATGTGTTC
GAGTATATTTAATTCAACGAGCAGAAATGCGCAGCTCAAAGCGATCAGAA
GATTGGAAAAAAAACTACTGGGAAACGTCAACCCAACGGAACTGTTTGGT
GACTGAGTAGCTTGTTTCGAACACGATACATCATCGTTGGGTCGAAGCTT
CAATTATATGACTTTTTCTAACCCCTTGACTAGCGTGAGTCATGTTTCGA
GCGTGAAGACAGCACTGCTGATGATTCCGTACTCTTTGTCAGCTTGAACA
AATATCTGCGCACCCACTGATGTTGTCTGCGGCACTGTCCAGGGTGTTGC
GTATCGTTTTGTCAGGTGCAGAATTTCGGAACGCGTTGCTATTTTTTTTC
TTGAACGATTTCGTTGTTGTTGTGGGGTTTGTGCGCAATCGACCACCTGT
TTCATGTCTTCGTTTTCTCCCGTGGTACATGTTTTGAAGACGTTCCACTC
CGACCGATGGCTAGAGAAAGTCGCGGCGAAGGAAGGCTCGGTCGTCGTCC
CGGTGGACGAAGCCGATCACTGGGTCCATTGGGACGCCGCAGACAGGGTG
AACAGCGAGCTGGACACCTTTCTGGGTGGCTCTTGAAGTTGAAGGAACGT
TGAGGGGAAGTGTATGCGAGTTATTTTGGTGTAGCTCGTTAATACCAGAG
ATTCTATGACGGCACCATGGGACCCTCGTGGGACGAGACAGGATCATTGT
CCTGTCCCGTAGCTATTTCTTCAGAAGACGAAGTCGAGTCCTATCCCGTC
GCGTCGGGTCACGAGACCCGCCGTGGTCACATGAGAACTTATGGAACCTA
TGCATTAATCCAGAATAATTTATGACGGGACCATCCCGCGGCCTGTCCCG
TACCATCGATCCGTAATAACCTCTGGTTACTACAGATGAGAGTACGTGGG
GTCGAGGGGGGCAACAATCGGACCGAGACGCCCACTCCCGAAAGAGGCCA
ACAATCGTTGTTTTCATCCTGTATGGTGGACCTCAAGAAAGGGAGCATTT
ATTCGCGGGTCCAAGATGTAGTCAGTGCTGCTGCTAGGGATGGGGTGACG
CCTCGCGGGTGGGAGTGGGAGAGTTCATGAGCCGATTTTTCCTGTTGATG
GGCGGGTTTTCCCTCTGCACAATTGTCAAAGATTGCTGTAGAAATTGAGG
TGAACACTCGATACCAAGGCGTACATTTCGTAGTTTTGGGATAGTGTTTA
TCGTTTACCGTCCTTGCGTGAGTGACTCGTAGCCCCTCTTCTACCGGTAG
AGGCATGAATGGGCCAGTGGGAACGGTGATTTGTTATGCCTGCTCTTTCG
TGTACGTTCCTGTGCACGTAGTTATGAGTGCGGGCACATCGTGTGGACTG
GATAGACAGGTGATGTGTATGTGGATTTAGTTTGATCACCAATGCATAAT
GATGTAACCTGATTATGTTGCATGGTTGTCTTTTGTACAGTGTTGAGAAG
AGTGCGTGTAAATTGATCCATTTTTTTAACCATATTACCGATACGTTCCC
ATTTTAGCGATGTTCCTCGCACCCATTGGTCTAAATTGAATGTTGAGGAC
CGTATGTTGCGTTTGATTTAGTGCAACAAGAACAATGACAGCAACAACAG
AAGAACTTTACAGAGAAGAAGAAAAATCTTAAATACTCCGAAGCGCAAGA
TGCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2238:15866..22069-

>mRNA_H-paniculata_contig2238.5958.1 ID=mRNA_H-paniculata_contig2238.5958.1|Name=mRNA_H-paniculata_contig2238.5958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig2238:15866..22069- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCGATAGACGTCGGTGGTGCCATGAAGCCGGGGCCGCTCGGTGC
GATGTGCATGATCTCGTACCAGATGTGGCTGATTTTGGCATTCCTGGCCG
GGAAGCCCATCGGCAATTGGATGGCGGGAGGCTTTGCAAGGCTCATAGAT
GCGCCCAACGGCAGGCGTATCGCGAAGGCATCTTCTTGCTACCCGTACTA
CCAGGTGTGGAAACACGCAATCAGGCACGGAGCCGGAAGTATGATGCCAG
ACTGTCCCCTCATGTTTATTCACGGCCGCGCGGGTATGAAGAAAATCATG
ATGGTGGCGATAGACGTCGGTGGTGCCATGAAGCCGGGGCCGCTCGGTGC
GATGTGCATGATCTCGTACCAGATGTGGCTGATTTTGGCATTCCTGGCCG
GGAAGCCCATCGGCAATTGGATGGCGGGAGGCTTTGCAAGGCTCATAGAT
GCGCCCAACGGCAGGCGTATCGCGAAGGCATCTTCTTGCTACCCGTACTA
CCAGGTGTGGAAACACGCAATCAGGCACGGAGCCGGAAGTATGATGCCAG
ACTGTCCCCTCATGTTTATTCACGGCCGCGCGGGTATGAAGAAAATCATG
ACGTTCCACTCCGACCGATGGCTAGAGAAAGTCGCGGCGAAGGAAGGCTC
GGTCGTCGTCCCGGTGGACGAAGCCGATCACTGGGTCCATTGGGACGCCG
CAGACAGGGTGAACAGCGAGCTGGACACCTTTCTGGGTGGCTCTTGAACG
TTCCACTCCGACCGATGGCTAGAGAAAGTCGCGGCGAAGGAAGGCTCGGT
CGTCGTCCCGGTGGACGAAGCCGATCACTGGGTCCATTGGGACGCCGCAG
ACAGGGTGAACAGCGAGCTGGACACCTTTCTGGGTGGCTCTTGA
back to top