mRNA_H-paniculata_contig2237.5956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2237.5956.1
Unique NamemRNA_H-paniculata_contig2237.5956.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2237.5956.1 vs. uniprot
Match: D7G2Y7_ECTSI (Similar to TNF receptor associated factor 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.740e-9
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   13 GDALRTERWIPRQILTRAPKTAEEIALDDNEEVWRQELSVSRARRRKE 156
            G+ LRT RW+ RQ+LTRAPKTAEEIALDD EE     L V++ RR+KE
Sbjct:   60 GEGLRTARWVKRQLLTRAPKTAEEIALDDKEE-----LVVAKMRRKKE 102
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BLAST of mRNA_H-paniculata_contig2237.5956.1 vs. uniprot
Match: A0A836CFD8_9STRA (TRAF-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD8_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.940e-5
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   16 DALRTERWIPRQILTRAPKTAEEIALDDNEEVWRQELSVSRARR 147
            + +RT +W+PR  L RAPK+AEEI L+     W+++L +++ARR
Sbjct:  801 EVVRTAKWVPRWQLRRAPKSAEEIELEQKAAEWKRDLILAKARR 844
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2237.5956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2Y7_ECTSI1.740e-964.58Similar to TNF receptor associated factor 4 n=1 Ta... [more]
A0A836CFD8_9STRA3.940e-545.45TRAF-type domain-containing protein (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2237contigH-paniculata_contig2237:4400..5197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size158
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.9676058-CDS-H-paniculata_contig2237:4400..44511622929620.9676058-CDS-H-paniculata_contig2237:4400..4451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2237 4401..4451 -
1691480938.5875404-CDS-H-paniculata_contig2237:4400..44511691480938.5875404-CDS-H-paniculata_contig2237:4400..4451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2237 4401..4451 -
1622929620.9805589-CDS-H-paniculata_contig2237:5092..51971622929620.9805589-CDS-H-paniculata_contig2237:5092..5197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2237 5093..5197 -
1691480938.598323-CDS-H-paniculata_contig2237:5092..51971691480938.598323-CDS-H-paniculata_contig2237:5092..5197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2237 5093..5197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2237.5956.1prot_H-paniculata_contig2237.5956.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2237 4401..5197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2237.5956.1

>prot_H-paniculata_contig2237.5956.1 ID=prot_H-paniculata_contig2237.5956.1|Name=mRNA_H-paniculata_contig2237.5956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
ASGGGDALRTERWIPRQILTRAPKTAEEIALDDNEEVWRQELSVSRARRR
KE
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mRNA from alignment at H-paniculata_contig2237:4400..5197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2237.5956.1 ID=mRNA_H-paniculata_contig2237.5956.1|Name=mRNA_H-paniculata_contig2237.5956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=798bp|location=Sequence derived from alignment at H-paniculata_contig2237:4400..5197- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGCGGCGGTGGTGATGCCCTGAGAACGGAGAGATGGATTCCTCGGCA
GATATTGACCAGGGCACCAAAGACCGCGGAAGAGATCGCCTTGGATGATA
ACGAGGTACAGTCGGTGGGCGGTGCTGTGGCCCCCTGCCGGTATAGGGAA
AATGCCTGTACTAGTCAAGGCGGTTTCTATAATGTCTTGTGTTTTCTGTT
GTCCCGCATATAGCGAGTGATGTTTGAGGCTGTCTGCCGTTTGCCATTTT
TCAACATTTAGAACCGCCACAAAATTTTAGGGATGTACAACGCTGTATCC
AACCTGGTGCATTGATGAGGCGAGCAGCTAATTGTGATGCATGCTGTGGG
TAGGCATGAATGAACATGCAGTAATGGTCATACGTTTCAGCTGAGATCCA
CGAAAAACTTGTTTCGTAACCTGTAAAACCTTATTTAGGTCATGACAGTA
CAACGACTGTTTTATGCTTGACTCAACCTGTACCTCGTAGCAGTTTGGGC
ATCTTCACGACACCTTCAACAGACAGTGTACGTGGGTGCTAGAATACAGC
TGTTTCCTTGAATACAACGCGCAAGAAAAAAAATGAGAAACATGGTGTAG
CAGTGGGTACTCCGATTGAAGAGGGGAGCATGTACGCAACAAGAAAACTT
CGCAGTTCGATCAAGTCAAATTCAGATTATGATAACAGTTGTATTTACAT
GTGGCAACAATCAGCCTACGATTTTTGTTCATTTTTTACTAAATAGGAAG
TCTGGCGGCAGGAGCTGTCCGTTTCGAGAGCTCGCCGGCGGAAAGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2237:4400..5197-

>mRNA_H-paniculata_contig2237.5956.1 ID=mRNA_H-paniculata_contig2237.5956.1|Name=mRNA_H-paniculata_contig2237.5956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig2237:4400..5197- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGCGGCGGTGGTGATGCCCTGAGAACGGAGAGATGGATTCCTCGGCA
GATATTGACCAGGGCACCAAAGACCGCGGAAGAGATCGCCTTGGATGATA
ACGAGGCCAGCGGCGGTGGTGATGCCCTGAGAACGGAGAGATGGATTCCT
CGGCAGATATTGACCAGGGCACCAAAGACCGCGGAAGAGATCGCCTTGGA
TGATAACGAGGAAGTCTGGCGGCAGGAGCTGTCCGTTTCGAGAGCTCGCC
GGCGGAAAGAGGAAGTCTGGCGGCAGGAGCTGTCCGTTTCGAGAGCTCGC
CGGCGGAAAGAG
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