prot_H-paniculata_contig2237.5956.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2237.5956.1
Unique Nameprot_H-paniculata_contig2237.5956.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length52
Homology
BLAST of mRNA_H-paniculata_contig2237.5956.1 vs. uniprot
Match: D7G2Y7_ECTSI (Similar to TNF receptor associated factor 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.740e-9
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    5 GDALRTERWIPRQILTRAPKTAEEIALDDNEEVWRQELSVSRARRRKE 52
            G+ LRT RW+ RQ+LTRAPKTAEEIALDD EE     L V++ RR+KE
Sbjct:   60 GEGLRTARWVKRQLLTRAPKTAEEIALDDKEE-----LVVAKMRRKKE 102          
BLAST of mRNA_H-paniculata_contig2237.5956.1 vs. uniprot
Match: A0A836CFD8_9STRA (TRAF-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD8_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.940e-5
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 0
Query:    6 DALRTERWIPRQILTRAPKTAEEIALDDNEEVWRQELSVSRARR 49
            + +RT +W+PR  L RAPK+AEEI L+     W+++L +++ARR
Sbjct:  801 EVVRTAKWVPRWQLRRAPKSAEEIELEQKAAEWKRDLILAKARR 844          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2237.5956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2Y7_ECTSI1.740e-964.58Similar to TNF receptor associated factor 4 n=1 Ta... [more]
A0A836CFD8_9STRA3.940e-545.45TRAF-type domain-containing protein (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2237contigH-paniculata_contig2237:4401..5197 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2237.5956.1mRNA_H-paniculata_contig2237.5956.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2237 4400..5197 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2237.5956.1 ID=prot_H-paniculata_contig2237.5956.1|Name=mRNA_H-paniculata_contig2237.5956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
ASGGGDALRTERWIPRQILTRAPKTAEEIALDDNEEVWRQELSVSRARRR
KE
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