mRNA_H-paniculata_contig22333.5942.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22333.5942.1
Unique NamemRNA_H-paniculata_contig22333.5942.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 3.010e-70
Identity = 196/307 (63.84%), Postives = 205/307 (66.78%), Query Frame = 1
Query:    1 VKVIHKWPRPAL---------------------PTVAEPLPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGIARSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQWSQRVDSLVAAGEWLEALAVALDHYEQKILPAEKAAA 858
            VKVIHKWPRP L                           LPPPCLSWGP QP+ A         APPMALLARGWGN+IQILAATRV D GG     XXXX           A WP LAVVKEL+ASA VVAVEWLREQVLAYLD +MELCVLDTRAG ELEHASLSTL ++ SPILPXXXXXXXXXXXXXXXXXXXXXX                XXXXXXX                  GTYHNAFRACEGRL+LLG QELRAVRVQ WSQRV+SLV AGEWLEALAVALDH+EQKILPAE AAA
Sbjct:  642 VKVIHKWPRPPLFSGXXXXXXXXXXXXXXXXXXXXXXGHLPPPCLSWGPSQPSAARAQ------APPMALLARGWGNSIQILAATRV-DAGGRGGAGXXXXRGG--------ARWPGLAVVKELSASAPVVAVEWLREQVLAYLDTDMELCVLDTRAGTELEHASLSTLSVSISPILPXXXXXXXXXXXXXXXXXXXXXXGTQAAGTRSGPAESTLXXXXXXXP-----------------GTYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQKILPAENAAA 916          
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.730e-22
Identity = 77/126 (61.11%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 VKVIHKWPRPALPTVAEP--------LPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQ 354
            VKVIHKWPRP L T             PPPCLSWGPPQP+ A         APPMALLARGWGN+IQILAATRV D GG     XXXX           A WP LAVVKEL+ASA VVAVEWLREQ
Sbjct:  665 VKVIHKWPRPPLFTGXXXXXXXXXGHFPPPCLSWGPPQPSAARAQ------APPMALLARGWGNSIQILAATRV-DAGGRGGAGXXXXRGG--------ARWPGLAVVKELSASAPVVAVEWLREQ 775          
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: K3X190_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X190_GLOUD)

HSP 1 Score: 91.3 bits (225), Expect = 1.110e-16
Identity = 83/287 (28.92%), Postives = 124/287 (43.21%), Query Frame = 1
Query:    1 VKVIHKWPRPALPTVAEP-LPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGIARSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQWSQRVDSLVAAGEWLEALAVALDHYEQ-KILPAEKAA 855
            VKV+++W RP   +  +P LP    +W      +  G+ R+  P     +L+RGWGN +Q L    VV  GG                   R  WP      ++  S  ++A++WL +QV+ YL++  E+CV D  +  ELE   +S+L +  +                                                                    ++ N+FR C+  L+LLG +EL+  RVQ W+QR+D+LV  GEWLEALA+ALDHYE  KI  A++AA
Sbjct:  406 VKVLYRWARPDDISPEDPVLPSLAFAW-----ISFPGSSRALAP-----VLSRGWGNHVQFL---EVVFPGGQNHSH-------------SRHGWPTFEEHDQIECSNDLMAIQWLGDQVVVYLNSNDEICVYDVMSRQELEIVDVSSLELVFASYRGKNAR------------------------------------------------------------SFSNSFRGCDNILYLLGLKELQTARVQPWTQRIDTLVDEGEWLEALALALDHYEGLKIAAADRAA 606          
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: F0VYQ3_9STRA (Vacuolar protein sortingassociated protein 8 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYQ3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.950e-16
Identity = 79/276 (28.62%), Postives = 118/276 (42.75%), Query Frame = 1
Query:    1 VKVIHKWPRPALPTVAEP-LPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGIARSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQWSQRVDSLVAAGEWLEALAVALDHYE 825
            VKVI++W RPA  T  +P LP    SW         G+ R   P     +LAR WG  +Q L    +V  GG                   R  WP       + ++  V+A++WL EQ++AYL+A+ E+CV D  +  ELE   +++L +  +                                                                    ++ N+FRAC+  L+LLG QEL++ RVQ W+QR+D+L+  GEW+EALA+ALD++E
Sbjct:  456 VKVIYRWARPADVTDEDPVLPSLAFSW-----VAFPGSARWVAP-----ILARAWGKHVQFL---ELVFTGGPNHSH-------------SRHGWPAFEEHTPVESTQDVMAIQWLGEQIVAYLNAKDEICVYDVLSRQELEIVDVTSLDLVFASYRGKNAR------------------------------------------------------------SFSNSFRACDNGLYLLGLQELKSARVQPWTQRIDTLIDQGEWMEALALALDNFE 645          
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: A0A024G3A1_9STRA (Vps8 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G3A1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.420e-16
Identity = 78/276 (28.26%), Postives = 117/276 (42.39%), Query Frame = 1
Query:    1 VKVIHKWPRPALPTVAEP-LPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGIARSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQWSQRVDSLVAAGEWLEALAVALDHYE 825
            VKVI +WPRPA  +  +P LP    SW         G+ R   P     +LAR WG  +Q L    ++  GG                   R  WP       +  +  V+A++WL EQ++AYL+A+ E+CV D  +  ELE   +++L +  +                                                                    ++ N+FRAC+  L+LLG QEL++ RVQ W+QR+D+L+  GEW+EALA+ALD++E
Sbjct:  447 VKVIFRWPRPADVSDEDPVLPSLAFSW-----VAFPGSTRWVAP-----ILARAWGKHVQFL---ELILTGGPNHSH-------------SRHGWPTFEEHAPVENAQDVMAIQWLGEQIVAYLNAKDEICVYDVLSRQELEIVDVASLDLVFASYRGKNAR------------------------------------------------------------SFSNSFRACDNGLYLLGLQELKSARVQPWTQRIDTLIDQGEWMEALALALDNFE 636          
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: A0A8K1FDH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL)

HSP 1 Score: 89.4 bits (220), Expect = 6.430e-16
Identity = 79/286 (27.62%), Postives = 122/286 (42.66%), Query Frame = 1
Query:    1 VKVIHKWPRPALPTVAEP-LPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGIARSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQWSQRVDSLVAAGEWLEALAVALDHYEQ-KILPAEKA 852
            VK++H+W RP      +P LP    +W      +  G+ R+  P     +LARGWG  +Q L    VV  GG                   +  WP      ++ +S+  +A++WL +QV+ YL++  E+CV D  +  ELE   +S+L +  +                                                                    ++ N+FR C+  L+LLG +EL+  RVQ W+QR+D+LV  G+WLEALA+ALDHYE  K+  A++A
Sbjct:  397 VKILHRWMRPEEIGADDPVLPSLAFAW-----ISFPGSSRALAP-----VLARGWGKHVQFL---EVVFPGGQNHSH-------------SKHGWPTFEEHDQIESSSDTMAIQWLGDQVVVYLNSHDEICVYDVMSRQELEIVDVSSLELVFASYRGKNAR------------------------------------------------------------SFSNSFRGCDNILYLLGLKELQTARVQPWTQRIDTLVEEGQWLEALALALDHYEGLKVAAADRA 596          
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: A0A5D6XX63_9STRA (Vps8 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX63_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.660e-16
Identity = 83/287 (28.92%), Postives = 123/287 (42.86%), Query Frame = 1
Query:    1 VKVIHKWPRPALPTVAEP-LPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGIARSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQWSQRVDSLVAAGEWLEALAVALDHYEQ-KILPAEKAA 855
            VKV+++W RP    V +P LP    +W      +  G+ R+  P     +LARGWG+ +Q L    VV  GG                   R  WP      +L  +  ++A++WL +QV+ YL+A  E+CV D  +  ELE   +S+L +  +                                                                    ++ N+FR  +  L+LLG +EL+  RVQ W+QR+D+LV  GEWLEALA+ALDHYE  K+  A++AA
Sbjct:  416 VKVLYRWARPDDIAVDDPVLPSLAFAW-----ISFPGSSRALAP-----VLARGWGSYVQFL---EVVFPGGPPHMHA-------------RHGWPTFEEHDQLECATDIMAIQWLGDQVVVYLNASDEICVYDVMSRQELEVVDVSSLELVFASYRGKNAR------------------------------------------------------------SFSNSFRGGDNILYLLGLKELQTARVQPWTQRIDTLVDEGEWLEALALALDHYEGLKVAAADRAA 616          
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: A0A662WX84_9STRA (Chromo domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX84_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.190e-15
Identity = 84/286 (29.37%), Postives = 122/286 (42.66%), Query Frame = 1
Query:    1 VKVIHKWPRPALPTVAEP-LPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGIARSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQWSQRVDSLVAAGEWLEALAVALDHYEQ-KILPAEKA 852
            V+V+++W RP      +P LP    +W      +  G+ R+  P     +LARGWGN +Q L    VV  GG                   R  +P      ++  S+ V+AV+WL +QV+ YL++  E+CV D  +  ELE   +S+L +  +                                                                    ++ N+FR C   L+LLG +EL+  RVQ W+QR+DSLV  GEWLEALA+ALDHYE  KI  A++A
Sbjct:  685 VRVLYRWTRPDDIAADDPVLPSLAFAW-----ISFPGSSRALAP-----VLARGWGNRVQFL---EVVFPGGKGHTHA-------------RHGFPTFDEHDQIECSSDVMAVQWLGDQVVVYLNSHDEICVYDVMSRQELEMVDVSSLELVFASYRGKNAR------------------------------------------------------------SFSNSFRGCYNILYLLGLKELQTARVQPWTQRIDSLVDEGEWLEALALALDHYEGLKIAAADRA 884          
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: A0A2P4Y7R6_9STRA (Glucosidase 2 subunit beta (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y7R6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.020e-15
Identity = 86/294 (29.25%), Postives = 124/294 (42.18%), Query Frame = 1
Query:    1 VKVIHKWPRP--------ALPTVAEPLPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGIARSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQWSQRVDSLVAAGEWLEALAVALDHYEQ-KILPAEKAA 855
            V+VI++W RP         LPT+A        +W      +  G+ R+  P     +LARGWGN +Q L    VV  GG                   R  +P      ++ +S+AV+AV+WL +QV+ YL++  E+CV D  +  ELE   +S+L +  +                                                                    ++ N+FR C   L+LLG +EL+  RV  W+QR+D LV  GEWLEALA+ALDHYE  KI  A++AA
Sbjct:  976 VRVIYRWARPDDIAPDDPVLPTLA-------FAW-----ISFPGSSRALAP-----VLARGWGNRVQFL---EVVFPGGKNHSHA-------------RHGFPTFDEHDQIESSSAVMAVQWLGDQVVVYLNSHDEICVYDVMSRQELEIVDVSSLELVFASYRGKNAR------------------------------------------------------------SFSNSFRGCYNILYLLGLKELQTARVLPWTQRIDLLVDDGEWLEALALALDHYEGLKIAAADRAA 1176          
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Match: G4Z679_PHYSP (Vps8 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z679_PHYSP)

HSP 1 Score: 86.7 bits (213), Expect = 5.130e-15
Identity = 86/294 (29.25%), Postives = 124/294 (42.18%), Query Frame = 1
Query:    1 VKVIHKWPRP--------ALPTVAEPLPPPCLSWGPPQPATAAGTPRSGPPAPPMALLARGWGNTIQILAATRVVDVGGXXXXXXXXXXXXXXXXGTKRAVWPRLAVVKELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGIARSPILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQWSQRVDSLVAAGEWLEALAVALDHYEQ-KILPAEKAA 855
            V+VI++W RP         LPT+A        +W      +  G+ R+  P     +LARGWGN +Q L    VV  GG                   R  +P      ++ +S+AV+AV+WL +QV+ YL++  E+CV D  +  ELE   +S+L +  +                                                                    ++ N+FR C   L+LLG +EL+  RV  W+QR+D LV  GEWLEALA+ALDHYE  KI  A++AA
Sbjct:  357 VRVIYRWARPDDIAPDDPVLPTLA-------FAW-----ISFPGSSRALAP-----VLARGWGNRVQFL---EVVFPGGKNHSHA-------------RHGFPTFDEHDQIESSSAVMAVQWLGDQVVVYLNSHDEICVYDVMSRQELEIVDVSSLELVFASYRGKNAR------------------------------------------------------------SFSNSFRGCYNILYLLGLKELQTARVLPWTQRIDLLVDDGEWLEALALALDHYEGLKIAAADRAA 557          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22333.5942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE3.010e-7063.84Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI2.730e-2261.11Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
K3X190_GLOUD1.110e-1628.92Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0VYQ3_9STRA1.950e-1628.62Vacuolar protein sortingassociated protein 8 putat... [more]
A0A024G3A1_9STRA6.420e-1628.26Vps8 domain-containing protein n=1 Tax=Albugo cand... [more]
A0A8K1FDH6_PYTOL6.430e-1627.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XX63_9STRA8.660e-1628.92Vps8 domain-containing protein n=1 Tax=Pythium bra... [more]
A0A662WX84_9STRA1.190e-1529.37Chromo domain-containing protein n=2 Tax=Nothophyt... [more]
A0A2P4Y7R6_9STRA5.020e-1529.25Glucosidase 2 subunit beta (Fragment) n=1 Tax=Phyt... [more]
G4Z679_PHYSP5.130e-1529.25Vps8 domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22333contigH-paniculata_contig22333:344..2445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog2880.D8LRX0
KEGG koko:K20178
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size957
Cds size957
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.5026126-CDS-H-paniculata_contig22333:343..6971622929619.5026126-CDS-H-paniculata_contig22333:343..697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22333 344..697 +
1691480938.1315408-CDS-H-paniculata_contig22333:343..6971691480938.1315408-CDS-H-paniculata_contig22333:343..697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22333 344..697 +
1622929619.5230193-CDS-H-paniculata_contig22333:1842..24451622929619.5230193-CDS-H-paniculata_contig22333:1842..2445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22333 1843..2445 +
1691480938.143458-CDS-H-paniculata_contig22333:1842..24451691480938.143458-CDS-H-paniculata_contig22333:1842..2445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22333 1843..2445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22333.5942.1prot_H-paniculata_contig22333.5942.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22333 344..2445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22333.5942.1

>prot_H-paniculata_contig22333.5942.1 ID=prot_H-paniculata_contig22333.5942.1|Name=mRNA_H-paniculata_contig22333.5942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=319bp
VKVIHKWPRPALPTVAEPLPPPCLSWGPPQPATAAGTPRSGPPAPPMALL
ARGWGNTIQILAATRVVDVGGGGGGNGGGGAGVRGGGGTKRAVWPRLAVV
KELTASAAVVAVEWLREQVLAYLDAEMELCVLDTRAGAELEHASLSTLGI
ARSPILPPPPSSQPSSATSATTAIMAAGTGDHREETKDDEITTTVSSLVV
PPPPPPPLPPSSEKTPQLPLGTYHNAFRACEGRLFLLGSQELRAVRVQQW
SQRVDSLVAAGEWLEALAVALDHYEQKILPAEKAAAALAAMTDSGGSSAT
GGISGGGDLAGQGSAAAAA
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mRNA from alignment at H-paniculata_contig22333:344..2445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22333.5942.1 ID=mRNA_H-paniculata_contig22333.5942.1|Name=mRNA_H-paniculata_contig22333.5942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2102bp|location=Sequence derived from alignment at H-paniculata_contig22333:344..2445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGTCATTCACAAGTGGCCACGCCCGGCACTACCAACCGTCGCCGA GCCCCTACCTCCCCCGTGCCTCTCGTGGGGACCACCGCAGCCCGCTACCG CTGCCGGCACCCCCCGCTCTGGTCCTCCAGCTCCGCCCATGGCCCTCCTC GCGCGGGGTTGGGGCAATACGATCCAGATCCTTGCTGCAACGCGCGTTGT GGACGTCGGTGGCGGCGGCGGCGGCAACGGTGGCGGGGGTGCCGGGGTGC GTGGTGGGGGAGGCACGAAGCGCGCCGTTTGGCCTCGGCTAGCGGTGGTA AAGGAGCTCACCGCGAGCGCGGCTGTCGTGGCTGTGGAGTGGCTTCGGGA ACAGGCAAGTGATTGTTTCGGTTGGCTTTATTGACTGTTTTTTCACGTTG TGTCTATTGTTATCATCTAATGGTGGTGGTGGTGGTAGTGATGCTGTATA TATTTCTTTTTCTGCTATTTTTTTACCGGGGGGGAGATTAGCTTTGTTTC TTGATAGGGCTTGTTGTTTTTGTGCTGTGCATATCTTCGGAGCAACCTCC TAATTTGAGCTTTGATTGACTTATACACGTGTGTTTCGGGCTTTTTGGTT TAGCCAATCTCTTTGTGCTTGCTTGATGGGGGTAGTTTCGTGCGTGGGGA TGTTCGCGTTTTCAGATTTGGCGAAGTTGCACGTTCGTTGTAGGTGGGTT GTTTTTCGCTCACACGGGATGCGAACACGGTGGATACGAACGTTTGAGAG CTCCATTTGGCCGACAGAAGGACTGAGGCGCGTTTTGCTCGGTCCTCCTT AGCCCTGCGTCTTTTGAGCTTTTTGCGCACATCGTTTTGTTTTTTTGGAC CTTTTGCCCGACGGCGTTTGCGGTAGTGCTAGCCACCACCGTTTGGCGTA GTCTTTAGTGACCCGACTGTACATGCATCGTTGCGGGGAAACATTTGTGC TACCACGTTGCTTACTTTTCGTGAATTATCTTGCTGACTGTGCTTGAGAT TCAGTTGTACAGCACCGACAACCAAGTATTGGTCCTCTAGGGAGAAAAAT TGTCGAAATTTGTTAGCGCTGATCAACAATCCACTACTGTAGTAGAGCCA CGACTACACCCGTGACGTCATACTCCAGTGTTTTGTCTTCGACCCTTGCA GTCATACTTCACTCCTCCCTGCGCTCGCATTAACTGCGAGACCATGACCA CTACACCTCAAAGTGTCGATAACGAAGAGGATAGTGACTCGACCCTTGGC GTACCAGAGACCAATCGGGGTAGTCGCCGTTTCTTTGATGCGGGGCGTCC AAACCTGAAAACGGACACTTTTGCTCCATGTATGCGGTGCTCGCCGCCAC TTGCAGATATCCGAACGCGATCCAAAAATCCTCCCTCTCTCTGTGACCCT TCCGTTCTTGCGTCTCTTTCTCCACCTCCCTTCTCCTGCCGCCCGTCGCC TGCCGCCCCGACATGGGTCCGGTATTGATGTTAATAATCATAATAATAGG TGTTGGCATACCTGGATGCCGAAATGGAGCTGTGCGTGCTCGACACGCGC GCGGGGGCGGAGTTGGAGCACGCAAGCTTGTCAACCCTGGGCATCGCCCG GTCGCCCATCCTTCCGCCGCCCCCGTCGTCTCAACCGTCGTCAGCGACCA GCGCAACCACAGCAATAATGGCGGCAGGGACAGGAGATCATCGAGAAGAG ACGAAGGACGACGAGATTACGACAACGGTGTCCTCCCTAGTCGTTCCTCC TCCTCCTCCTCCTCCTCTTCCCCCCTCTAGTGAAAAAACTCCTCAATTGC CGTTGGGAACTTATCACAACGCGTTTCGCGCGTGCGAGGGGCGGCTGTTC CTCCTCGGCAGCCAAGAGCTTCGCGCGGTGCGCGTGCAGCAGTGGTCGCA GCGGGTGGACTCTCTCGTGGCCGCGGGGGAGTGGCTAGAGGCCCTCGCCG TAGCCCTCGACCACTACGAGCAGAAGATCCTTCCCGCGGAAAAAGCGGCG GCGGCGCTGGCCGCCATGACCGATAGCGGTGGTTCCTCCGCAACGGGAGG AATTAGCGGGGGCGGGGATTTAGCCGGCCAGGGGTCGGCGGCGGCGGCGG CA
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Coding sequence (CDS) from alignment at H-paniculata_contig22333:344..2445+

>mRNA_H-paniculata_contig22333.5942.1 ID=mRNA_H-paniculata_contig22333.5942.1|Name=mRNA_H-paniculata_contig22333.5942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at H-paniculata_contig22333:344..2445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGTCATTCACAAGTGGCCACGCCCGGCACTACCAACCGTCGCCGA
GCCCCTACCTCCCCCGTGCCTCTCGTGGGGACCACCGCAGCCCGCTACCG
CTGCCGGCACCCCCCGCTCTGGTCCTCCAGCTCCGCCCATGGCCCTCCTC
GCGCGGGGTTGGGGCAATACGATCCAGATCCTTGCTGCAACGCGCGTTGT
GGACGTCGGTGGCGGCGGCGGCGGCAACGGTGGCGGGGGTGCCGGGGTGC
GTGGTGGGGGAGGCACGAAGCGCGCCGTTTGGCCTCGGCTAGCGGTGGTA
AAGGAGCTCACCGCGAGCGCGGCTGTCGTGGCTGTGGAGTGGCTTCGGGA
ACAGGTGAAAGTCATTCACAAGTGGCCACGCCCGGCACTACCAACCGTCG
CCGAGCCCCTACCTCCCCCGTGCCTCTCGTGGGGACCACCGCAGCCCGCT
ACCGCTGCCGGCACCCCCCGCTCTGGTCCTCCAGCTCCGCCCATGGCCCT
CCTCGCGCGGGGTTGGGGCAATACGATCCAGATCCTTGCTGCAACGCGCG
TTGTGGACGTCGGTGGCGGCGGCGGCGGCAACGGTGGCGGGGGTGCCGGG
GTGCGTGGTGGGGGAGGCACGAAGCGCGCCGTTTGGCCTCGGCTAGCGGT
GGTAAAGGAGCTCACCGCGAGCGCGGCTGTCGTGGCTGTGGAGTGGCTTC
GGGAACAGGTGTTGGCATACCTGGATGCCGAAATGGAGCTGTGCGTGCTC
GACACGCGCGCGGGGGCGGAGTTGGAGCACGCAAGCTTGTCAACCCTGGG
CATCGCCCGGTCGCCCATCCTTCCGCCGCCCCCGTCGTCTCAACCGTCGT
CAGCGACCAGCGCAACCACAGCAATAATGGCGGCAGGGACAGGAGATCAT
CGAGAAGAGACGAAGGACGACGAGATTACGACAACGGTGTCCTCCCTAGT
CGTTCCTCCTCCTCCTCCTCCTCCTCTTCCCCCCTCTAGTGAAAAAACTC
CTCAATTGCCGTTGGGAACTTATCACAACGCGTTTCGCGCGTGCGAGGGG
CGGCTGTTCCTCCTCGGCAGCCAAGAGCTTCGCGCGGTGCGCGTGCAGCA
GTGGTCGCAGCGGGTGGACTCTCTCGTGGCCGCGGGGGAGTGGCTAGAGG
CCCTCGCCGTAGCCCTCGACCACTACGAGCAGAAGATCCTTCCCGCGGAA
AAAGCGGCGGCGGCGCTGGCCGCCATGACCGATAGCGGTGGTTCCTCCGC
AACGGGAGGAATTAGCGGGGGCGGGGATTTAGCCGGCCAGGGGTCGGCGG
CGGCGGCGGCAGTGTTGGCATACCTGGATGCCGAAATGGAGCTGTGCGTG
CTCGACACGCGCGCGGGGGCGGAGTTGGAGCACGCAAGCTTGTCAACCCT
GGGCATCGCCCGGTCGCCCATCCTTCCGCCGCCCCCGTCGTCTCAACCGT
CGTCAGCGACCAGCGCAACCACAGCAATAATGGCGGCAGGGACAGGAGAT
CATCGAGAAGAGACGAAGGACGACGAGATTACGACAACGGTGTCCTCCCT
AGTCGTTCCTCCTCCTCCTCCTCCTCCTCTTCCCCCCTCTAGTGAAAAAA
CTCCTCAATTGCCGTTGGGAACTTATCACAACGCGTTTCGCGCGTGCGAG
GGGCGGCTGTTCCTCCTCGGCAGCCAAGAGCTTCGCGCGGTGCGCGTGCA
GCAGTGGTCGCAGCGGGTGGACTCTCTCGTGGCCGCGGGGGAGTGGCTAG
AGGCCCTCGCCGTAGCCCTCGACCACTACGAGCAGAAGATCCTTCCCGCG
GAAAAAGCGGCGGCGGCGCTGGCCGCCATGACCGATAGCGGTGGTTCCTC
CGCAACGGGAGGAATTAGCGGGGGCGGGGATTTAGCCGGCCAGGGGTCGG
CGGCGGCGGCGGCA
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