mRNA_H-paniculata_contig22322.5938.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 316 bits (809), Expect = 2.740e-96 Identity = 170/456 (37.28%), Postives = 264/456 (57.89%), Query Frame = 1
Query: 1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
A KE+++ +H V +L+P SS+P I+GT++VFK K DG+FKARLVV G Q+ G D G ++AP V+ + APG + TG+P V L++S+YGL QSP +WN T+ L G+ T SDPCVY S + ++L+++ DDIL+TG +L + +L ++F +TD+GEV LGI+V R+ + GTL +SQ YV ++L+RF M ANP TPG + +T +D Q+L K YQ+M GS+++L QCTRFD+ ++ +Q ++ S P Q ++ A K + RY++ +P +PI Y R + RL + D+S P STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ +Y+ EL + S + SD+ GAL +A N+ +S R+KH+ +R+ +++
Sbjct: 360 ACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRE 814
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 305 bits (781), Expect = 5.730e-96 Identity = 166/451 (36.81%), Postives = 260/451 (57.65%), Query Frame = 1
Query: 16 LNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
+++ +H V +L+P SS+P I+GT++VFK K DG+FKARLVV G Q+ G D G ++AP V+ + APG + TG+P V L++S+YGL QSP +WN T+ L G+ T SDPCVY S + ++L+++ DDIL+TG +L + +L ++F +TD+GEV LGI+V R+ + GTL +SQ YV + L+RF M ANP T G + +T +D Q+L K YQ+M GS+++L QCT+FD+ ++ +Q ++ S P Q ++ A K + RY++ +P +PI Y R + RL + D+S P STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ +Y+ EL + S + SD+ GAL +A N+ +S R+KH+A+R+ +++
Sbjct: 1 MDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRE 450
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 310 bits (793), Expect = 2.150e-95 Identity = 169/456 (37.06%), Postives = 262/456 (57.46%), Query Frame = 1
Query: 1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
A KE+ + +H V L+P SS+P I+GT++VFK DG+FKARLVV G Q+ G D G ++AP V+ + APG + TG+P V L++S+YGL QS +WN T+ L +G+ T SDPCVY S + ++L+++ DDIL+TG +L + +L ++F +TD+GEV LGI+V R+ + GTL +SQ YV ++L+RF M ANP TPG + +T +D Q+L K YQ+M GS+++L QCTRFD+ ++ +Q ++ S P Q ++ A K + RY++ +P +PI Y R + RL + D+S P STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ +Y+ EL + S + SD+ GAL +A N+ +S R+KH+A+R+ +++
Sbjct: 204 ACSKEMYNLRKHNVYILVPLSSVPEGEKILGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRE 658
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 305 bits (782), Expect = 1.930e-93 Identity = 171/456 (37.50%), Postives = 256/456 (56.14%), Query Frame = 1
Query: 1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
A+ E+ + +H+V + S +P D I TR+VFK+KAD +FKARLV G Q+ G G +AP V+ + APG E+ PTTG+ V L+KS+YGL QSP++WN I + L G+ T SDPCVY S D +L+++ DDIL+TG + + +LM+ F +TD+GEV +GIEV R+ + GTL +SQ Y +L R+ M ANP TPG + +T +D QLL + +QA+ GSL++L QCTR+D+ ++V Q R + P Q H+ A K + RY++ PD+PI Y + + RL + D+S P STTG +FF GL+ + ++ Q + A +T EAEL AL+ A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHIA+RF L++
Sbjct: 237 AIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 691
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 283 bits (724), Expect = 9.100e-87 Identity = 160/434 (36.87%), Postives = 244/434 (56.22%), Query Frame = 1
Query: 10 KELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASHCTP-----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQLTS-CEVRSDNRGALHLAAN 1185
KE+++ +H V +L+P SS+P I+GT++VFK K DG+FKA LVV G Q+ G D GS++AP V+ + APG + TG+P V L++S+YGL QSP +WN T+ L+ G+ T DPCVY S + ++L+++ DDIL+TG +L +D + +L ++F +TD+GEV LGI+V R+ + GTL +SQ YV ++L+RF M ANP T G + +T +D Q+L K YQ+M S+++L QCTRFD+ ++ +Q ++ S P Q +L A K + RY++ +P +PI Y R + L D+S STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ IY+ E + + SD+ GAL +A N
Sbjct: 100 KEMDNLRKHNVYNLVPLSSVPKGEEILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGGDQQL-VDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGALTVAGN 531
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 293 bits (750), Expect = 3.300e-86 Identity = 167/462 (36.15%), Postives = 260/462 (56.28%), Query Frame = 1
Query: 1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVD---------------CG-------------------STFAPESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLG-------YFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQG-IYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
A KE+++ +H V +L+P SS+P I+GT++VFK K DG+FKARL V G Q+ G D C + V+ + APG + T +P V L++S+YGL QSP +WN T+ L G+ T SDPCVY S ++ ++ S++ DDIL+TG +L + +L ++F +TD+GEV LGI+V R+ + GTL +SQ YV ++L+RF M ANP TPG + +T +D Q+L K YQ+M GS+++L QCTRFD+ ++ +Q ++ S P Q ++ A K + RY++ +P +PI Y R + RL + D+S P STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ +Y+ EL + S + SD+ GAL +A N+ +S R+KH+A+R+ +++
Sbjct: 585 ACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLAVGGHRQEPGQDYRNAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRE 1045
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 295 bits (756), Expect = 9.760e-86 Identity = 175/458 (38.21%), Postives = 249/458 (54.37%), Query Frame = 1
Query: 1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTG-PTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASHCT-----PSTTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGL--QLTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
A +E+ S + +V L+P S++P + I ++WVFK KADG FK R+V QGW+Q G+DCGST+AP E VF +Q PGFE G VM L KS+YGL QSP W +TI L +GF SDPCVY N I L+L+ DD+L+ G +D + M V+ KL +F +TDLGE SL LG+E+ R+ + TL +SQ Y S+L+RF +S + PT TPG ++ + ED+ LLD T++YQ +VGSL+++ Q R+DI ++ Q AR M+ P++ H+VA K RY+ D ITY + +L + D++ ST+ + AN + F S LQ +TA ST EAELVA A + ++ + ELG + V DN LH N +SSR+KHIA+RF +++
Sbjct: 1169 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISM-VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRE 1623
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 283 bits (725), Expect = 1.040e-85 Identity = 172/469 (36.67%), Postives = 247/469 (52.67%), Query Frame = 1
Query: 4 MRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTG-PTDRLPMDVRN------------KLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASHCT-----PSTTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGL--QLTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
+++E+ S +V L+P S++P I ++WVFK KADG FK R+V QGW+Q G+DCGST+AP E VF +Q PGFE G VM L KS+YGL QSP W +TI L +GF SDPCVY N I L+L+ DD+L+ G +D + + + KL +F +TDLGE S LG+++ R+ + TL +SQ Y S+L+RF MS + PT TPG ++ + ED+ LLD T++YQ +VGSL+++ Q R+DI ++ Q AR M+ P++ H+VA K RY+ D ITY + +L + D++ ST+ + AN + F S LQ +TA ST EAELVA A K+ ++ + ELG + V DN LH N +SSR+KHIA+RF +++
Sbjct: 149 LKREMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRE 615
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 289 bits (740), Expect = 3.260e-85 Identity = 170/430 (39.53%), Postives = 241/430 (56.05%), Query Frame = 1
Query: 1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP-------ESVFCKQAP-GFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTG-PTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASHCT-----PSTTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGL--QLTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
A +E+ S + +V L+P S +P + I ++WVFK KADG FK R+V QGW+Q G+DCGST+AP V C G VM L KS+YGL QSP W +TI L +GF SDPCVY N I L+L+ DD+L+ G +D + M V+ KL +F +TDLGE SL L +E+ R+ + TL +SQ Y S+L+RF MS + PT TPG ++ + ED+ LLD T++YQ +VGSL+++ Q R+DI ++ Q AR M+ P++ H+VA K RY+ D ITY + +L + D++ ST+ + AN + F S LQ +TA ST EAELVA A K+ ++ + ELG + V DN LH N +SSR+KHIA+RF +++
Sbjct: 527 AAEREMKSLSDRKVYKLVPRSGVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVDFNLIFDQMDDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISM-VKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRE 954
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE) HSP 1 Score: 264 bits (674), Expect = 1.320e-79 Identity = 155/451 (34.37%), Postives = 242/451 (53.66%), Query Frame = 1
Query: 16 LNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
+++ +H V +L+P SS+P I+GT++VFK DG+FKARLVV G+ Q+ G D G ++AP V+ + APG + TG+P V L++S+YGL Q W T SDPCVY S + ++L+++ DDIL+TG +L + +L ++F +TD+GEV LGI+V R+ + GTL +SQ YV ++L+RF M ANP Q+L K YQ+M GS++ L QCTRFD+ ++ +Q ++ S P Q ++ A K RY++ +P +PI Y R + RL + D+S P STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ +Y+ EL + S + SD+ GAL +A N+ +S R+K +A+R+ +++
Sbjct: 1 MDNLWKHNVYNLVPFSSVPKGEKILGTKFVFKKDLDGRFKARLVVGGYRQEPGQDYGRSYAPVCRIGGIRMTCAIGCHHNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQ----WKRT-------------QSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP-----------------DQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNATHSQRTKLVALRYFFIRE 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22322.5938.1 >prot_H-paniculata_contig22322.5938.1 ID=prot_H-paniculata_contig22322.5938.1|Name=mRNA_H-paniculata_contig22322.5938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=414bp MRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQback to top mRNA from alignment at H-paniculata_contig22322:3..1355+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22322.5938.1 ID=mRNA_H-paniculata_contig22322.5938.1|Name=mRNA_H-paniculata_contig22322.5938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1353bp|location=Sequence derived from alignment at H-paniculata_contig22322:3..1355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22322:3..1355+ >mRNA_H-paniculata_contig22322.5938.1 ID=mRNA_H-paniculata_contig22322.5938.1|Name=mRNA_H-paniculata_contig22322.5938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2484bp|location=Sequence derived from alignment at H-paniculata_contig22322:3..1355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |