mRNA_H-paniculata_contig22322.5938.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22322.5938.1
Unique NamemRNA_H-paniculata_contig22322.5938.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 2.740e-96
Identity = 170/456 (37.28%), Postives = 264/456 (57.89%), Query Frame = 1
Query:    1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
            A  KE+++  +H V +L+P SS+P    I+GT++VFK K DG+FKARLVV G  Q+ G D G ++AP                                      V+ + APG    +  TG+P V  L++S+YGL QSP +WN T+   L   G+  T SDPCVY   S +  ++L+++ DDIL+TG   +L    + +L ++F +TD+GEV   LGI+V R+ + GTL +SQ  YV ++L+RF M  ANP  TPG   + +T   +D Q+L     K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++ A K + RY++ +P +PI Y R + RL  + D+S    P    STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+ GAL +A N+ +S R+KH+ +R+  +++
Sbjct:  360 ACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRE 814          
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 5.730e-96
Identity = 166/451 (36.81%), Postives = 260/451 (57.65%), Query Frame = 1
Query:   16 LNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
            +++  +H V +L+P SS+P    I+GT++VFK K DG+FKARLVV G  Q+ G D G ++AP                                      V+ + APG    +  TG+P V  L++S+YGL QSP +WN T+   L   G+  T SDPCVY   S +  ++L+++ DDIL+TG   +L    + +L ++F +TD+GEV   LGI+V R+ + GTL +SQ  YV + L+RF M  ANP  T G   + +T   +D Q+L     K YQ+M GS+++L QCT+FD+ ++ +Q ++  S P Q ++ A K + RY++ +P +PI Y R + RL  + D+S    P    STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+ GAL +A N+ +S R+KH+A+R+  +++
Sbjct:    1 MDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRE 450          
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 2.150e-95
Identity = 169/456 (37.06%), Postives = 262/456 (57.46%), Query Frame = 1
Query:    1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
            A  KE+ +  +H V  L+P SS+P    I+GT++VFK   DG+FKARLVV G  Q+ G D G ++AP                                      V+ + APG    +  TG+P V  L++S+YGL QS  +WN T+   L  +G+  T SDPCVY   S +  ++L+++ DDIL+TG   +L    + +L ++F +TD+GEV   LGI+V R+ + GTL +SQ  YV ++L+RF M  ANP  TPG   + +T   +D Q+L     K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++ A K + RY++ +P +PI Y R + RL  + D+S    P    STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+ GAL +A N+ +S R+KH+A+R+  +++
Sbjct:  204 ACSKEMYNLRKHNVYILVPLSSVPEGEKILGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRE 658          
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 1.930e-93
Identity = 171/456 (37.50%), Postives = 256/456 (56.14%), Query Frame = 1
Query:    1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
            A+  E+ +  +H+V   +  S +P D  I  TR+VFK+KAD +FKARLV  G  Q+ G   G  +AP                                      V+ + APG E+  PTTG+  V  L+KS+YGL QSP++WN  I + L   G+  T SDPCVY   S D   +L+++ DDIL+TG    +    + +LM+ F +TD+GEV   +GIEV R+ + GTL +SQ  Y   +L R+ M  ANP  TPG   + +T   +D QLL     + +QA+ GSL++L QCTR+D+ ++V Q  R  + P Q H+ A K + RY++  PD+PI Y + + RL  + D+S    P    STTG +FF   GL+ + ++ Q + A +T EAEL AL+  A++ +Y+     E+G +   S  + SD+ GAL +A+N+ +SSR+KHIA+RF  L++
Sbjct:  237 AIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 691          
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 9.100e-87
Identity = 160/434 (36.87%), Postives = 244/434 (56.22%), Query Frame = 1
Query:   10 KELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASHCTP-----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQLTS-CEVRSDNRGALHLAAN 1185
            KE+++  +H V +L+P SS+P    I+GT++VFK K DG+FKA LVV G  Q+ G D GS++AP                                      V+ + APG    +  TG+P V  L++S+YGL QSP +WN T+   L+  G+  T  DPCVY   S +  ++L+++ DDIL+TG   +L +D + +L ++F +TD+GEV   LGI+V R+ + GTL +SQ  YV ++L+RF M  ANP  T G   + +T   +D Q+L     K YQ+M  S+++L QCTRFD+ ++ +Q ++  S P Q +L A K + RY++ +P +PI Y R +  L    D+S         STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++ IY+     E   +      + SD+ GAL +A N
Sbjct:  100 KEMDNLRKHNVYNLVPLSSVPKGEEILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGGDQQL-VDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGALTVAGN 531          
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 3.300e-86
Identity = 167/462 (36.15%), Postives = 260/462 (56.28%), Query Frame = 1
Query:    1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVD---------------CG-------------------STFAPESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLG-------YFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQG-IYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
            A  KE+++  +H V +L+P SS+P    I+GT++VFK K DG+FKARL V G  Q+ G D               C                    +      V+ + APG    +  T +P V  L++S+YGL QSP +WN T+   L   G+  T SDPCVY   S ++ ++ S++ DDIL+TG   +L    + +L ++F +TD+GEV   LGI+V R+ + GTL +SQ  YV ++L+RF M  ANP  TPG   + +T   +D Q+L     K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++ A K + RY++ +P +PI Y R + RL         + D+S    P    STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++  +Y+     EL  +   S  + SD+ GAL +A N+ +S R+KH+A+R+  +++
Sbjct:  585 ACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLAVGGHRQEPGQDYRNAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRE 1045          
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 9.760e-86
Identity = 175/458 (38.21%), Postives = 249/458 (54.37%), Query Frame = 1
Query:    1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTG-PTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASHCT-----PSTTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGL--QLTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
            A  +E+ S  + +V  L+P S++P +   I ++WVFK KADG FK R+V QGW+Q  G+DCGST+AP                                    E VF +Q PGFE      G   VM L KS+YGL QSP  W +TI   L  +GF    SDPCVY    N   I L+L+ DD+L+ G  +D + M V+ KL  +F +TDLGE SL LG+E+ R+ +  TL +SQ  Y  S+L+RF +S + PT TPG  ++ +    ED+ LLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+VA K   RY+    D  ITY +   +L  + D++         ST+  +   AN  + F S LQ +TA ST EAELVA A    + ++   +  ELG   +     V  DN   LH   N  +SSR+KHIA+RF  +++
Sbjct: 1169 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISM-VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRE 1623          
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 1.040e-85
Identity = 172/469 (36.67%), Postives = 247/469 (52.67%), Query Frame = 1
Query:    4 MRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTG-PTDRLPMDVRN------------KLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASHCT-----PSTTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGL--QLTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
            +++E+ S    +V  L+P S++P     I ++WVFK KADG FK R+V QGW+Q  G+DCGST+AP                                    E VF +Q PGFE      G   VM L KS+YGL QSP  W +TI   L  +GF    SDPCVY    N   I L+L+ DD+L+ G  +D +   + +            KL  +F +TDLGE S  LG+++ R+ +  TL +SQ  Y  S+L+RF MS + PT TPG  ++ +    ED+ LLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+VA K   RY+    D  ITY +   +L  + D++         ST+  +   AN  + F S LQ +TA ST EAELVA A   K+ ++   +  ELG   +     V  DN   LH   N  +SSR+KHIA+RF  +++
Sbjct:  149 LKREMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRE 615          
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 3.260e-85
Identity = 170/430 (39.53%), Postives = 241/430 (56.05%), Query Frame = 1
Query:    1 AMRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP-------ESVFCKQAP-GFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTG-PTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASHCT-----PSTTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGL--QLTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
            A  +E+ S  + +V  L+P S +P +   I ++WVFK KADG FK R+V QGW+Q  G+DCGST+AP         V C              G   VM L KS+YGL QSP  W +TI   L  +GF    SDPCVY    N   I L+L+ DD+L+ G  +D + M V+ KL  +F +TDLGE SL L +E+ R+ +  TL +SQ  Y  S+L+RF MS + PT TPG  ++ +    ED+ LLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+VA K   RY+    D  ITY +   +L  + D++         ST+  +   AN  + F S LQ +TA ST EAELVA A   K+ ++   +  ELG   +     V  DN   LH   N  +SSR+KHIA+RF  +++
Sbjct:  527 AAEREMKSLSDRKVYKLVPRSGVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVDFNLIFDQMDDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISM-VKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRE 954          
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 1.320e-79
Identity = 155/451 (34.37%), Postives = 242/451 (53.66%), Query Frame = 1
Query:   16 LNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQGWSQKHGVDCGSTFAP------------------------------------ESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVTGPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPITYSRCEPRLLGYFDASH-CTP----STTGIMFFFANGLVHFSSRLQKITASSTTEAELVALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSKYSSRSKHIAIRFAALKD 1242
            +++  +H V +L+P SS+P    I+GT++VFK   DG+FKARLVV G+ Q+ G D G ++AP                                      V+ + APG    +  TG+P V  L++S+YGL Q    W  T              SDPCVY   S +  ++L+++ DDIL+TG   +L    + +L ++F +TD+GEV   LGI+V R+ + GTL +SQ  YV ++L+RF M  ANP                  Q+L     K YQ+M GS++ L QCTRFD+ ++ +Q ++  S P Q ++ A K   RY++ +P +PI Y R + RL  + D+S    P    STTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+ GAL +A N+ +S R+K +A+R+  +++
Sbjct:    1 MDNLWKHNVYNLVPFSSVPKGEKILGTKFVFKKDLDGRFKARLVVGGYRQEPGQDYGRSYAPVCRIGGIRMTCAIGCHHNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQ----WKRT-------------QSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP-----------------DQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNATHSQRTKLVALRYFFIRE 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22322.5938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE92_9PHAE2.740e-9637.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE5.730e-9636.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE2.150e-9537.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE1.930e-9337.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDU8_9PHAE9.100e-8736.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE3.300e-8636.15Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KJH6_9PHAE9.760e-8638.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE1.040e-8536.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE3.260e-8539.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KDK0_9PHAE1.320e-7934.37Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22322contigH-paniculata_contig22322:3..1355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score228.0
Seed ortholog evalue7.9e-57
Seed eggNOG ortholog4081.Solyc11g062200.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons2
Model size1245
Cds size1242
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22322.5938.1prot_H-paniculata_contig22322.5938.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22322 6..1355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.8899765-UTR-H-paniculata_contig22322:2..51622929618.8899765-UTR-H-paniculata_contig22322:2..5Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22322 3..5 +
1691480937.9793603-UTR-H-paniculata_contig22322:2..51691480937.9793603-UTR-H-paniculata_contig22322:2..5Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22322 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.9358635-CDS-H-paniculata_contig22322:5..2031622929618.9358635-CDS-H-paniculata_contig22322:5..203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22322 6..203 +
1691480937.991423-CDS-H-paniculata_contig22322:5..2031691480937.991423-CDS-H-paniculata_contig22322:5..203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22322 6..203 +
1622929618.9587145-CDS-H-paniculata_contig22322:311..13551622929618.9587145-CDS-H-paniculata_contig22322:311..1355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22322 312..1355 +
1691480938.0045345-CDS-H-paniculata_contig22322:311..13551691480938.0045345-CDS-H-paniculata_contig22322:311..1355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22322 312..1355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22322.5938.1

>prot_H-paniculata_contig22322.5938.1 ID=prot_H-paniculata_contig22322.5938.1|Name=mRNA_H-paniculata_contig22322.5938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=414bp
MRKELNSFDEHQVADLIPASSIPSDHTIIGTRWVFKVKADGKFKARLVVQ
GWSQKHGVDCGSTFAPESVFCKQAPGFEKTHPTTGQPYVMSLKKSIYGLR
QSPNVWNHTIFNELRSMGFTPTVSDPCVYSKGSNDTYIMLSLFADDILVT
GPTDRLPMDVRNKLMNKFTITDLGEVSLTLGIEVLRNEQTGTLQLSQHKY
VLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGS
LIFLTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYVQSHPDVPIT
YSRCEPRLLGYFDASHCTPSTTGIMFFFANGLVHFSSRLQKITASSTTEA
ELVALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSKYSSR
SKHIAIRFAALKD*
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mRNA from alignment at H-paniculata_contig22322:3..1355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22322.5938.1 ID=mRNA_H-paniculata_contig22322.5938.1|Name=mRNA_H-paniculata_contig22322.5938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1353bp|location=Sequence derived from alignment at H-paniculata_contig22322:3..1355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATGCGGAAGGAACTCAACAGCTTCGACGAACATCAAGTCGCCGATTT AATCCCAGCTAGCTCCATCCCATCCGACCACACAATTATTGGCACGCGCT GGGTATTTAAAGTAAAAGCAGACGGAAAATTCAAGGCTCGGCTCGTGGTA CAAGGCTGGTCGCAAAAACATGGGGTTGACTGCGGGAGTACCTTTGCACC TGTATGCAGACTGGAGAGCCAGCGACTACTGCTAGCACTAGCGACGGCAA AGGATTGGACCGTATTTGCACTAGATGTTCAAGTTGCTTTTCTAAACGGC AAGCTAAAGGAGAGCGTCTTCTGCAAACAAGCACCTGGTTTTGAGAAGAC TCACCCTACTACTGGACAACCCTACGTGATGAGTTTGAAGAAATCGATAT ATGGGTTGCGCCAAAGCCCAAATGTGTGGAATCATACAATTTTCAACGAG CTGAGGAGCATGGGTTTTACACCAACTGTCTCGGACCCCTGTGTCTACAG TAAAGGAAGCAACGACACCTACATTATGCTTAGTCTTTTCGCCGACGATA TACTAGTGACAGGACCAACGGACAGGCTGCCAATGGACGTGCGCAACAAG CTGATGAATAAATTTACTATCACGGACCTTGGAGAAGTATCGCTTACACT TGGGATAGAGGTACTACGCAACGAACAGACCGGCACTCTACAGCTATCAC AGCACAAGTATGTACTATCTGTTTTAGACAGGTTCAACATGTCATCAGCG AATCCCACGAAAACACCTGGAGTTAAAACGGACTCCACTACTACTACTAG CGAAGACAGTCAACTACTGGATGCAGCAGCTACAAAGGAGTACCAAGCCA TGGTAGGGAGCCTCATCTTCTTGACCCAGTGTACAAGATTCGACATCTGC TTCAGCGTCATCCAAGCGGCACGCTACATGAGCGCACCAACTCAACAGCA TCTCGTTGCAGTAAAGCGGATTTTTCGGTATGTACAGAGTCACCCAGATG TTCCCATCACGTACAGCAGATGTGAGCCAAGACTACTCGGCTATTTTGAT GCATCACACTGCACACCGTCTACAACAGGCATTATGTTCTTCTTTGCCAA CGGATTGGTACACTTCTCATCTCGACTACAGAAGATAACGGCTTCAAGCA CAACTGAGGCAGAACTCGTCGCACTGGCTACATGCGCAAAACAAGGTATT TACCTTCTGGGTATCTGCAGGGAGCTGGGTCTTCAACTGACTAGCTGTGA GGTTCGAAGTGACAACCGGGGAGCTCTTCATCTCGCGGCCAACAGCAAGT ACTCAAGCCGCAGCAAACACATCGCCATCAGGTTCGCAGCACTGAAAGAC TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22322:3..1355+

>mRNA_H-paniculata_contig22322.5938.1 ID=mRNA_H-paniculata_contig22322.5938.1|Name=mRNA_H-paniculata_contig22322.5938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2484bp|location=Sequence derived from alignment at H-paniculata_contig22322:3..1355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGAAGGAACTCAACAGCTTCGACGAACATCAAGTCGCCGATTTAAT
CCCAGCTAGCTCCATCCCATCCGACCACACAATTATTGGCACGCGCTGGG
TATTTAAAGTAAAAGCAGACGGAAAATTCAAGGCTCGGCTCGTGGTACAA
GGCTGGTCGCAAAAACATGGGGTTGACTGCGGGAGTACCTTTGCACCTAT
GCGGAAGGAACTCAACAGCTTCGACGAACATCAAGTCGCCGATTTAATCC
CAGCTAGCTCCATCCCATCCGACCACACAATTATTGGCACGCGCTGGGTA
TTTAAAGTAAAAGCAGACGGAAAATTCAAGGCTCGGCTCGTGGTACAAGG
CTGGTCGCAAAAACATGGGGTTGACTGCGGGAGTACCTTTGCACCTGAGA
GCGTCTTCTGCAAACAAGCACCTGGTTTTGAGAAGACTCACCCTACTACT
GGACAACCCTACGTGATGAGTTTGAAGAAATCGATATATGGGTTGCGCCA
AAGCCCAAATGTGTGGAATCATACAATTTTCAACGAGCTGAGGAGCATGG
GTTTTACACCAACTGTCTCGGACCCCTGTGTCTACAGTAAAGGAAGCAAC
GACACCTACATTATGCTTAGTCTTTTCGCCGACGATATACTAGTGACAGG
ACCAACGGACAGGCTGCCAATGGACGTGCGCAACAAGCTGATGAATAAAT
TTACTATCACGGACCTTGGAGAAGTATCGCTTACACTTGGGATAGAGGTA
CTACGCAACGAACAGACCGGCACTCTACAGCTATCACAGCACAAGTATGT
ACTATCTGTTTTAGACAGGTTCAACATGTCATCAGCGAATCCCACGAAAA
CACCTGGAGTTAAAACGGACTCCACTACTACTACTAGCGAAGACAGTCAA
CTACTGGATGCAGCAGCTACAAAGGAGTACCAAGCCATGGTAGGGAGCCT
CATCTTCTTGACCCAGTGTACAAGATTCGACATCTGCTTCAGCGTCATCC
AAGCGGCACGCTACATGAGCGCACCAACTCAACAGCATCTCGTTGCAGTA
AAGCGGATTTTTCGGTATGTACAGAGTCACCCAGATGTTCCCATCACGTA
CAGCAGATGTGAGCCAAGACTACTCGGCTATTTTGATGCATCACACTGCA
CACCGTCTACAACAGGCATTATGTTCTTCTTTGCCAACGGATTGGTACAC
TTCTCATCTCGACTACAGAAGATAACGGCTTCAAGCACAACTGAGGCAGA
ACTCGTCGCACTGGCTACATGCGCAAAACAAGGTATTTACCTTCTGGGTA
TCTGCAGGGAGCTGGGTCTTCAACTGACTAGCTGTGAGGTTCGAAGTGAC
AACCGGGGAGCTCTTCATCTCGCGGCCAACAGCAAGTACTCAAGCCGCAG
CAAACACATCGCCATCAGGTTCGCAGCACTGAAAGACTGAGAGAGCGTCT
TCTGCAAACAAGCACCTGGTTTTGAGAAGACTCACCCTACTACTGGACAA
CCCTACGTGATGAGTTTGAAGAAATCGATATATGGGTTGCGCCAAAGCCC
AAATGTGTGGAATCATACAATTTTCAACGAGCTGAGGAGCATGGGTTTTA
CACCAACTGTCTCGGACCCCTGTGTCTACAGTAAAGGAAGCAACGACACC
TACATTATGCTTAGTCTTTTCGCCGACGATATACTAGTGACAGGACCAAC
GGACAGGCTGCCAATGGACGTGCGCAACAAGCTGATGAATAAATTTACTA
TCACGGACCTTGGAGAAGTATCGCTTACACTTGGGATAGAGGTACTACGC
AACGAACAGACCGGCACTCTACAGCTATCACAGCACAAGTATGTACTATC
TGTTTTAGACAGGTTCAACATGTCATCAGCGAATCCCACGAAAACACCTG
GAGTTAAAACGGACTCCACTACTACTACTAGCGAAGACAGTCAACTACTG
GATGCAGCAGCTACAAAGGAGTACCAAGCCATGGTAGGGAGCCTCATCTT
CTTGACCCAGTGTACAAGATTCGACATCTGCTTCAGCGTCATCCAAGCGG
CACGCTACATGAGCGCACCAACTCAACAGCATCTCGTTGCAGTAAAGCGG
ATTTTTCGGTATGTACAGAGTCACCCAGATGTTCCCATCACGTACAGCAG
ATGTGAGCCAAGACTACTCGGCTATTTTGATGCATCACACTGCACACCGT
CTACAACAGGCATTATGTTCTTCTTTGCCAACGGATTGGTACACTTCTCA
TCTCGACTACAGAAGATAACGGCTTCAAGCACAACTGAGGCAGAACTCGT
CGCACTGGCTACATGCGCAAAACAAGGTATTTACCTTCTGGGTATCTGCA
GGGAGCTGGGTCTTCAACTGACTAGCTGTGAGGTTCGAAGTGACAACCGG
GGAGCTCTTCATCTCGCGGCCAACAGCAAGTACTCAAGCCGCAGCAAACA
CATCGCCATCAGGTTCGCAGCACTGAAAGACTGA
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