mRNA_H-paniculata_contig22319.5937.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22319.5937.1
Unique NamemRNA_H-paniculata_contig22319.5937.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: A0A4S4K685_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K685_9APHY)

HSP 1 Score: 230 bits (587), Expect = 1.650e-67
Identity = 143/440 (32.50%), Postives = 216/440 (49.09%), Query Frame = 1
Query:    1 VAQGFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAFSP----------------------------------------------------------------FLSRHT--VYEFKQDIIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECRGSLWAVLSDIGAGVQESSRGRSGKSTE-YGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGFGCKG---STTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKFQR 1110
            VA+GF+Q+EG D  ET AP ++  ++C++ +L A HD ++  MDV +A+LN  + +E++++ PP F                                                                   +S HT  + + K D+   F M DLG    +L +E+ RDRP  T+T++Q  Y   +L       C     +        +++ S+   G   + Y  M+GSLMYA+TG RPD+AY V   ++    P   + +  KR++RYL    D  I+++   +   + G VDA+WA DV  R+S TGY+F L GGAISW S+KQ     S+TE EY+AA +  KE ++LR LL    FGC     S  L  +N+S I L K +  H RTKHI +R+H IR+    G + + Y    DQ+A I+T+ L+R K +R
Sbjct:   62 VARGFTQIEGIDYNETFAPVSKFTSICSLLALTAHHDLEIHQMDVKSAFLNGDLNKEIYMQCPPGFEAKDSKVWKLNKSLYGLKQASRKWYKRVCAKFKAMGFTRSDYDHAIFFKLEDGHLLIAAVYVNDMLLVSDHTPVIQKLKSDLSTRFEMTDLGEAHWILNMEIVRDRPRNTLTLTQRQYTETILN------CFSLALSTPMVPNKKLEKLSKPEDGIDVKLYQSMLGSLMYAMTGTRPDLAYTVGVLSQHSATPGNAHINAMKRVYRYLRGTLDYRIVYSSERHSDLI-GYVDADWAADVSSRQSITGYVFLLAGGAISWSSKKQSSTALSTTEAEYMAASDASKEAIWLRGLLHE--FGCLNPSYSVLLMIDNQSAIALVKNAEFHSRTKHIAIRYHFIRKIHDRGDILVEYCPTGDQVADIMTKALAREKHER 492          
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: X1WUQ9_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WUQ9_ACYPI)

HSP 1 Score: 236 bits (601), Expect = 3.030e-66
Identity = 131/399 (32.83%), Postives = 222/399 (55.64%), Query Frame = 1
Query:    1 VAQGFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPA----------------------------FSPFLSRHTVYEFKQDIIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECRGSLWAVLSDIGAGVQESSRGRSGKSTEYGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGFGCKGSTTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKFQRL 1113
            VAQGFSQ EG D ++T +P A++ TL  + ++A + ++ L+ +DV  A+L   + E+++++ P                              F  ++++    E K  +   F M+D G L+  LG+++  D+  G + I+Q  Y+ +VLK +  D C      + S +   +QE ++    +   Y  +VGSLMYA+ G+RPD++YA++   R    P + +++  KR+ RY+    + G+ F  +SN   L G VDA+WA    DRKSTTGY+FK+    +SW +++Q  V  SSTE EY+A      E +++R+LL+ +     G   LFE+N+  I+LS     H R+KHI  + H +RE+++E L+++ Y+  S+QLA +L++GL   +F+RL
Sbjct:  586 VAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMILKLNKSLYGLKQASKCWHERFDNYIAK---LEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLN--IQEDNKQECNQP--YRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNKCHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAVSNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREKVKEELIELKYIPTSNQLADLLSKGLGNEQFKRL 977          
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: A0A438FT54_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FT54_VITVI)

HSP 1 Score: 227 bits (578), Expect = 1.000e-65
Identity = 146/444 (32.88%), Postives = 232/444 (52.25%), Query Frame = 1
Query:    1 VAQGFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAF-----------------------SPFLSR----------------HTVY------------------------------EFKQDIIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECRGSLWAVLSDIGAGVQESSRGRSGKSTEYGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGFGCKGSTTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKFQRLRNLL 1125
            VA+G+ Q  G D  E  AP A++ T+  V S+AA++ + +  +DV +A+L+  +EEE+++  PP +                         + SR                HT+Y                              +FK+ +++ F M D+G +   LGIEV +   +  + ISQ  Y  E+L  +   +C   +    S++G  + +S  G+   ST Y  +VGSLMY LT  RPDI +AV+  +R ME+P   +    KRIFRYL    D GI++  R     L G  D+++A D+ DRKST+G +F L+ GAI+W S+KQQ+VT S+TE E+VAA     + ++LR LLE +    +G T ++ +N S I LSK    H R+KHI +R+H +R+  ++G++ + + +  DQ+A ILT+ L  + F +LR++L
Sbjct:   93 VAKGYKQEFGVDYKEVFAPVAKLDTIRLVLSMAAQNSWSIHQLDVKSAFLHGELEEEVYIDQPPGYVKQGYENQVYKLKKALYGLKQAPRAWYSRIDAYFIEEGFIKCPYEHTLYTKYGVDKKILIVCLYVDDLIYTSNNKTMLADFKKSMMKGFDMTDMGLMHYFLGIEVVQS--SAGVFISQKKYALEILDKFMLKDCNSVI--TPSEVGLKLSKSGAGKRVDSTLYKQIVGSLMY-LTSTRPDIMHAVNLISRYMENPTEVHLLAAKRIFRYLKGTVDFGILYK-RGERSSLIGFSDSDYAGDLDDRKSTSGAVFMLNSGAITWSSKKQQIVTLSTTEAEFVAAASSSCQAIWLRRLLEVLYNQQQGPTVIYCDNLSAIKLSKNLVLHGRSKHIDVRYHFLRDLCKDGVIDLVFCKSEDQIADILTKPLKPVVFMKLRSML 530          
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: A0A3S3PWW7_9ACAR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PWW7_9ACAR)

HSP 1 Score: 226 bits (576), Expect = 3.650e-65
Identity = 146/440 (33.18%), Postives = 222/440 (50.45%), Query Frame = 1
Query:    1 VAQGFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAF---------------------SPFLSRHTVYEF----------------------------------------------KQDIIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECRGSLWAVLSDIGAGVQESSRGRS-GKSTEYGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGFGCKGSTTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKFQRLR 1116
            VA+G++Q  G D  ET AP A+  T+  + ++AA  D +++ M V  A+L   ++EE +++ P  F                     +P +   T+++F                                              K D+ + F M DLG L+  LGIE+ R R   +I +SQ  YI  +LK +   E + ++  +  + G   QE S  +S  +   Y  +VGSLMYA+   R DIA +V   +R M +    +F   KR+ RYL+   D  +M   +     L G  DA+W  +  DRKST+GY+F+L G ++SW S+KQQ V  SSTE EY+A     +E V+LR LL+ IGF  +  TT+FE+N++ I L+K +  H RTKHI +R H IRE++  GL++I Y+   + +A ILT+ L   +FQ LR
Sbjct:  141 VAKGYTQKYGIDFEETFAPVAKFTTIRTLLTIAAMMDLEIKQMGVKTAFLYGEMQEEAYMEQPEGFVIPGKEHLVCKLRKSIYGLKQAPRMWNSTIHKFFIKNGFKQCQSDWCLYVQTVEKVLFVLIYVDDLIIASSNTQAIEKLKNDMSKIFSMTDLGELNYFLGIEIIRIREKKSILLSQKRYIMRLLKRFHMQESKPAITPI--EFGYKFQEKSEEKSQNEKIPYREIVGSLMYAMVCTRRDIAASVGILSRYMNNFTHSHFKAAKRVLRYLNGTRDFALML--KPENEALIGYSDADWGGNTDDRKSTSGYLFQLGGSSLSWNSKKQQTVALSSTEAEYMALSTATQECVWLRNLLQEIGFKQEMPTTIFEDNQACIKLTKSTKNHARTKHIDIRHHFIREKVDSGLVEIEYMSSEEMIADILTKPLPGPRFQILR 576          
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 233 bits (595), Expect = 5.040e-65
Identity = 148/438 (33.79%), Postives = 213/438 (48.63%), Query Frame = 1
Query:    1 VAQGFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAFSPFLSR-----HTVYEFKQ----------------------------------------------DII-----------------RCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECRGSLWAVLSDIGAGVQESSRGRSGKSTEYGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGFGCKGSTTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKFQR 1110
            VA+GF+QVEG D  ET AP  +  +L  + +LAA+ D ++  MDV  AYL+  +EEE++++ P  F     +      +VY  KQ                                              DII                 R F M DLG +  VLG+EV RDR   TI +SQ  Y+ E+L+  G+ + R      L++      ++          Y   +GSLMYA+ G RPD+AY V   ++    P   +     R F+YL    D  ++F G+     L G VDA+WA DV DR+S +GY F L GGA+SW S+KQ     SSTE EY+AA    KE  +LR  L  IG  CK +T L  +N+S + +++    H RTKHI +R+H +RE++  G + + YV   DQ+A +LT+GL + K  +
Sbjct:  694 VAKGFTQVEGIDFDETFAPVVKFTSLRTLLALAAKEDLEVHQMDVKTAYLHGELEEEIYLQPPAGFGVPEGKVWKLIKSVYGLKQAGRVWYLRIKSEFEKLGYTRIDSDHSFFTKWAREDGTILYAAIYVDDIILVSNSMDALLEAKEALKRLFNMSDLGEVHWVLGLEVIRDRNARTIALSQRRYVEEILERAGYSDARPIATPALANEHMAKVDAPEV---DVLTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQRALVRAFKYLRGTADYQLVFDGKKPWE-LTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 233 bits (595), Expect = 8.290e-65
Identity = 151/448 (33.71%), Postives = 221/448 (49.33%), Query Frame = 1
Query:    1 VAQGFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAF--------------------------------------------SPFLS----------------------RHTVYEFKQDIIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECRGSLWAVLSDIGAGVQESSRGRSGKSTEYGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMF---AGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGF---------GCKGSTTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKFQR 1110
            VA+GF+QVEG D  +T AP ++  ++  V +LAA +D  ++ MDV +A+LN  ++EE+++  PP F                                            S F+                       R T+  FK  +   F M DLGS   +LG+E+ RDR   T++ISQ  YI ++L+ +G   CR     +  ++     E     +     Y   +GSLMYA+ G+RPD+A+AV   ++    P  +++    R+FRYL    DL + +   +  SNG    G  DA+WA DV DR+ST+G  F L GGA+SW S+KQQ +  SSTE EYVA     KE ++LR LL+ +           G K +  L  +N+S + L+K S  H RTKHI +R H IR+ I  G L+  YV   DQ+A +LT+ L+R K  R
Sbjct: 1057 VAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENGVILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNL---KLEKLSEATIDPKPYQSALGSLMYAMLGSRPDLAFAVGALSKHSATPGPQHWKALMRVFRYLRGSSDLCLSYKPDSEHSNGATPLGYCDADWAGDVNDRRSTSGQAFFLHGGAVSWQSKKQQSIAQSSTEAEYVALASAAKEALWLRALLDDLAIPASISRSSPGSKVTPLLLVDNQSAMALAKNSTFHDRTKHIAVRHHFIRDEIERGTLEAEYVPTDDQVADVLTKALAREKHVR 1501          
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: A0A2N9GEP0_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GEP0_FAGSY)

HSP 1 Score: 227 bits (578), Expect = 3.350e-64
Identity = 131/376 (34.84%), Postives = 214/376 (56.91%), Query Frame = 1
Query:    1 VAQGFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAFSPFLSRHTVYEFKQD---IIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECRGSLWAVLSDIGAGVQESSRGRSG----KSTEYGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGFGCKGSTTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKFQ 1107
            VA+G+SQ  G D  E  +P  R  ++ AV +L A+ D +LE +DV  A+L+  +EEE+F+  P  F    + + V   K+    + + F MKDLG+  ++LG+E+ RDR    + +SQ +YI++VL+ +   + +    ++ +       +  +            Y   VG LMYA+   RPD+A+AV   +R M +P R++++  K IFRYL    + GI+F+ +   + + G VDA++A +V DR+STTGY+F L  G I W S  Q +V  S+TE EY+A  E  KE ++L+ L++ +G   +G   +  +++S I L+K    H RTKHI +R+H IRE I  G + +  V  S+  A +LT+ ++  KF+
Sbjct:  355 VAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMVQPEGFKQPGTENLVCRLKKLKSLLYKEFEMKDLGAAKKILGMEIHRDRDARKLWLSQKNYIKKVLEKFSMLDAKPVSTSLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSEGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPVTIAKFK 729          
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: A0A6A3CDW5_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CDW5_HIBSY)

HSP 1 Score: 230 bits (587), Expect = 8.710e-64
Identity = 126/372 (33.87%), Postives = 221/372 (59.41%), Query Frame = 1
Query:   10 GFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAFSPFLS---RHTVYEFKQDIIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECR--GSLWAVLSDIGAGVQESSRGRSGKSTE--YGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGFGCKGSTTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKF 1104
            G++Q EG D  E  +P  R+ T+  V ++ A  D  LE +DV  A+L+  ++EE+++ L P     ++   +  + E K  + R F MKDLGS +++L +++ RDR N  I +SQ +Y++++L  +   +C+   +   +   + + +  SS     K +   Y   VGSLM+A+   RPDIA AV   +R M +P +++++T KRI RY+    ++ + + G  +   + G VD+++A D+   KSTTGY+FK+ GGA+SW S+ Q +V  S+TE EYVAA +  KE ++L+ LLE +G   +   ++F +++S ++L++    H RTKHI +++H IRE++ EG + +  +   D +A  +T+ ++  KF
Sbjct:  717 GYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATLDLHLEQLDVKTAFLHGNLKEEIYM-LQPEDDMLVAGPNKDHIEELKAQLAREFEMKDLGSANKILEMQIHRDRSNRKIWLSQKNYLKKILSRFNMQDCKLISTPLPINFKLSSSMSPSSEEERMKMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMTNPGKEHWNTVKRILRYIKGTSNVALCYGG--SNLLINGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQSVVATSTTEAEYVAATQASKEAIWLKMLLEELGHNQE-YVSVFCDSQSALHLARNPSFHSRTKHIRVQYHFIREKVEEGTVDMQKIHTKDNIADFMTKAINADKF 1084          
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 226 bits (575), Expect = 1.820e-63
Identity = 138/436 (31.65%), Postives = 213/436 (48.85%), Query Frame = 1
Query:    1 VAQGFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAFSPFLS-----RHTVYEFKQ-------------------------------------------------------------DIIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECRGSLWAVLSDIGAGVQESSRGRSGKSTEYGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGFGCKGSTTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKFQR 1110
            VA+GF+QVEG D  +T AP  +  ++ A+ +LAA+ D ++  MDV +A+LN  ++EE+F+  PP F    +     R  +Y  KQ                                                             D+   + M DLG   R+L I++ RDR   TI ++Q  Y+  +L   G  +CR     +  ++       +      +T Y   +GSLMYA+ G RPD+A+AV   ++    P  ++++    +++YL    DL +++ G + G      VDANWA DV DR+S TGY++ + G AISW S+KQ     SSTE EY+A     KE ++LR  L+ I      +T L  +N+S + L+K +  H RTKHI +R H IR+ + EG ++  YV   DQ+A +LT+ L+R K  R
Sbjct:  350 VAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKNEDGVLLIVAVYIDDMLIFCNSLPAVEALKADLGSHYDMTDLGEARRILNIKIIRDRARRTIELTQRQYVESILTHQGMADCRPVSTPMAQNLKLLKLSDAEI---DATPYQSALGSLMYAMLGTRPDLAFAVGALSKHAAHPGEEHWTALMHVYKYLRATTDLRLVYDGNAKGEFPLCYVDANWASDVNDRRSVTGYVYIMSGAAISWSSKKQPSTALSSTEAEYMAMAGATKEALWLRTFLDEIQQLPAAATLLLVDNQSAMALAKNAAFHDRTKHIAVRHHFIRDELEEGHIRAEYVPTGDQVADVLTKALAREKHVR 782          
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 229 bits (584), Expect = 2.270e-63
Identity = 147/440 (33.41%), Postives = 224/440 (50.91%), Query Frame = 1
Query:    1 VAQGFSQVEGEDSFETSAPTARMPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAF------------------------------------------------------SPFL--------------SRHTVYEFKQDIIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKGYGFDECRGSLWAVLSDIGAGVQESSRGRSGKSTEYGGMVGSLMYALTGNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSNGHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTETEYVAAGEGGKEMVYLRELLESIGFGCKGSTTLFENNKSVINLSKGSGAHCRTKHIGLRWHGIRERIREGLLKI*YVQISDQLAGILTEGLSRIKFQRLR 1116
            VA+G+ Q  G D +E  AP A+  T+  +  LAAE  + +  +DV +A+L+  ++E++FV+ P  F                                                      S FL              S   +  FK  ++  F M DLG +   LG+EV +D     I I+Q  Y  E++K YG + C      ++   G  + ++  G +   TE+  ++GSL Y LT  RPD+ ++V+  +R ME P  ++    KRI RY+    DLGI +  R     L G VD+++A DV DRKST+GY+F L GGAI+W S+KQ +VT S+TE E+V+A  G  + V+LR +LE IG   +G T +F +N S I LSK    H R+KHI +R+H +RE ++EG +++ Y   +DQ+A I+T+ + R  F+ LR
Sbjct:  891 VAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERG--IFINQRKYAAEIIKKYGMEGCNSVKNPIVP--GQKLTKAGAGDAVDPTEFKQLIGSLRY-LTTTRPDLIFSVNLVSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYE-RGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVFEELR 1324          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22319.5937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S4K685_9APHY1.650e-6732.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
X1WUQ9_ACYPI3.030e-6632.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A438FT54_VITVI1.000e-6532.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A3S3PWW7_9ACAR3.650e-6533.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZY34_9AGAM5.040e-6533.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A1M2VV58_TRAPU8.290e-6533.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GEP0_FAGSY3.350e-6434.84Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A3CDW5_HIBSY8.710e-6433.87Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A1C7MSU6_GRIFR1.820e-6331.65Retrovirus-related Pol polyprotein from transposon... [more]
Q9C7Y1_ARATH2.270e-6333.41Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22319contigH-paniculata_contig22319:2373..3777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score188.0
Seed ortholog evalue7.1e-45
Seed eggNOG ortholog7029.ACYPI067527-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38VJ1@33154,3CB3U@33208,3DT1J@33213,3EE1Z@33342,3SW1M@50557,4294G@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Exons3
Model size1125
Cds size975
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22319.5937.1prot_H-paniculata_contig22319.5937.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22319 2439..3693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.7414265-UTR-H-paniculata_contig22319:2372..24381622929618.7414265-UTR-H-paniculata_contig22319:2372..2438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22319 2373..2438 +
1691480937.931619-UTR-H-paniculata_contig22319:2372..24381691480937.931619-UTR-H-paniculata_contig22319:2372..2438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22319 2373..2438 +
1622929618.828699-UTR-H-paniculata_contig22319:3693..37771622929618.828699-UTR-H-paniculata_contig22319:3693..3777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22319 3694..3777 +
1691480937.9707081-UTR-H-paniculata_contig22319:3693..37771691480937.9707081-UTR-H-paniculata_contig22319:3693..3777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22319 3694..3777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.7707486-CDS-H-paniculata_contig22319:2438..25981622929618.7707486-CDS-H-paniculata_contig22319:2438..2598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22319 2439..2598 +
1691480937.9420052-CDS-H-paniculata_contig22319:2438..25981691480937.9420052-CDS-H-paniculata_contig22319:2438..2598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22319 2439..2598 +
1622929618.7865987-CDS-H-paniculata_contig22319:2807..29801622929618.7865987-CDS-H-paniculata_contig22319:2807..2980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22319 2808..2980 +
1691480937.9507418-CDS-H-paniculata_contig22319:2807..29801691480937.9507418-CDS-H-paniculata_contig22319:2807..2980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22319 2808..2980 +
1622929618.8029578-CDS-H-paniculata_contig22319:3051..36931622929618.8029578-CDS-H-paniculata_contig22319:3051..3693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22319 3052..3693 +
1691480937.960963-CDS-H-paniculata_contig22319:3051..36931691480937.960963-CDS-H-paniculata_contig22319:3051..3693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22319 3052..3693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22319.5937.1

>prot_H-paniculata_contig22319.5937.1 ID=prot_H-paniculata_contig22319.5937.1|Name=mRNA_H-paniculata_contig22319.5937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp
MPTLCAVFSLAAEHDFQLESMDVDAAYLNAPVEEELFVKLPPAFSPFLSR
HTVYEFKQDIIRCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREV
LKGYGFDECRGSLWAVLSDIGAGVQESSRGRSGKSTEYGGMVGSLMYALT
GNRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLSTVPDLGIMFAGRSN
GHCLEGIVDANWAEDVYDRKSTTGYIFKLDGGAISWCSRKQQLVTWSSTE
TEYVAAGEGGKEMVYLRELLESIGFGCKGSTTLFENNKSVINLSKGSGAH
CRTKHIGLRWHGIRERIREGLLKI*
back to top

mRNA from alignment at H-paniculata_contig22319:2373..3777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22319.5937.1 ID=mRNA_H-paniculata_contig22319.5937.1|Name=mRNA_H-paniculata_contig22319.5937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1405bp|location=Sequence derived from alignment at H-paniculata_contig22319:2373..3777+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCTCAAGGCTTTTCACAGGTGGAGGGTGAAGATTCCTTTGAAACCAG TGCCCCCACAGCTCGCATGCCGACGTTATGTGCTGTTTTTAGCCTGGCTG CCGAGCATGATTTCCAACTAGAAAGCATGGACGTAGATGCGGCGTATTTG AACGCCCCTGTAGAAGAAGAGTTGTTTGTTAAGCTACCCCCCGCGTTTTC CCCCTTTCTCTCGAGACATACCGTTTGTGCGCCGCCTACGTAAAGGCCTA TACGGCCTCAAGCAGAGCGGCCGAAATTGGAATAACAGTCTCGACGATTT TCTTATTAGGATAGGCTCCAACGTTCCACTACCGACCCATGCTTGTACTT TCCTCGCGACGATGGGGGAGAAACAGACATTCTCGGGCCGTCTATGTTGA CGACCTGGCCATCGCTGGACGCCGTGAGAAAGTAGACGAGTTCAAGCAGG ACATAATTCGGTGTTTTAGGATGAAAGACTTGGGCTCTCTCTCTCGCGTG TTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACCATAACCATCTC GCAGGGTAGCTACATCCGCGAGGTACTAAAAGGATACGGTTTTGACGAGT GTCGAGGGGTACCCACCCTGTAGAGGGAAAAGTGAAGATTTTGGTACTCA AGTCAGCCGACAAGCCCTCCGAACCGGAGTCACTTTGGGCTGTACTGTCG GACATAGGCGCAGGAGTACAAGAAAGCAGCAGAGGGAGAAGTGGCAAGTC AACTGAATATGGAGGCATGGTAGGATCACTCATGTACGCCTTGACAGGAA ATAGACCTGATATAGCATACGCGGTACACCAGGCAGCACGTCGTATGGAA GACCCATGTCGGAAATACTTCAGTACATGCAAGCGCATTTTTCGTTATCT CAGTACGGTGCCTGACCTCGGCATTATGTTCGCCGGTAGGAGTAATGGTC ACTGTCTGGAAGGAATCGTTGATGCCAACTGGGCGGAAGATGTCTACGAC CGAAAGTCCACAACAGGGTACATATTCAAACTAGACGGCGGTGCGATAAG TTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGACAG AGTACGTTGCTGCAGGAGAAGGGGGAAAGGAGATGGTATATCTTAGGGAG TTGCTAGAATCGATAGGTTTCGGATGCAAGGGGAGCACGACATTGTTTGA GAACAATAAATCAGTTATTAATCTCAGTAAGGGATCTGGCGCACACTGCC GGACAAAGCACATCGGATTGCGCTGGCACGGAATTCGAGAGAGGATCCGG GAAGGACTATTGAAAATATAATATGTACAGATCAGCGACCAACTCGCTGG CATTTTAACGGAAGGACTAAGCAGAATAAAGTTTCAGAGACTTAGAAATT TACTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22319:2373..3777+

>mRNA_H-paniculata_contig22319.5937.1 ID=mRNA_H-paniculata_contig22319.5937.1|Name=mRNA_H-paniculata_contig22319.5937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig22319:2373..3777+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGACGTTATGTGCTGTTTTTAGCCTGGCTGCCGAGCATGATTTCCA
ACTAGAAAGCATGGACGTAGATGCGGCGTATTTGAACGCCCCTGTAGAAG
AAGAGTTGTTTGTTAAGCTACCCCCCGCGTTTTCCCCCTTTCTCTCGAGA
CATACCGTTTATGCCGACGTTATGTGCTGTTTTTAGCCTGGCTGCCGAGC
ATGATTTCCAACTAGAAAGCATGGACGTAGATGCGGCGTATTTGAACGCC
CCTGTAGAAGAAGAGTTGTTTGTTAAGCTACCCCCCGCGTTTTCCCCCTT
TCTCTCGAGACATACCGTTTACGAGTTCAAGCAGGACATAATTCGGTGTT
TTAGGATGAAAGACTTGGGCTCTCTCTCTCGCGTGTTGGGAATAGAAGTA
CGACGTGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACAT
CCGCGAGGTACTAAAAGGATACGGTTTTGACGAGTGTCGAGGGACGAGTT
CAAGCAGGACATAATTCGGTGTTTTAGGATGAAAGACTTGGGCTCTCTCT
CTCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACCATA
ACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAGGATACGGTTT
TGACGAGTGTCGAGGGTCACTTTGGGCTGTACTGTCGGACATAGGCGCAG
GAGTACAAGAAAGCAGCAGAGGGAGAAGTGGCAAGTCAACTGAATATGGA
GGCATGGTAGGATCACTCATGTACGCCTTGACAGGAAATAGACCTGATAT
AGCATACGCGGTACACCAGGCAGCACGTCGTATGGAAGACCCATGTCGGA
AATACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTACGGTGCCT
GACCTCGGCATTATGTTCGCCGGTAGGAGTAATGGTCACTGTCTGGAAGG
AATCGTTGATGCCAACTGGGCGGAAGATGTCTACGACCGAAAGTCCACAA
CAGGGTACATATTCAAACTAGACGGCGGTGCGATAAGTTGGTGCTCTAGG
AAGCAACAGTTAGTCACGTGGTCCAGTACAGAGACAGAGTACGTTGCTGC
AGGAGAAGGGGGAAAGGAGATGGTATATCTTAGGGAGTTGCTAGAATCGA
TAGGTTTCGGATGCAAGGGGAGCACGACATTGTTTGAGAACAATAAATCA
GTTATTAATCTCAGTAAGGGATCTGGCGCACACTGCCGGACAAAGCACAT
CGGATTGCGCTGGCACGGAATTCGAGAGAGGATCCGGGAAGGACTATTGA
AAATATAATCACTTTGGGCTGTACTGTCGGACATAGGCGCAGGAGTACAA
GAAAGCAGCAGAGGGAGAAGTGGCAAGTCAACTGAATATGGAGGCATGGT
AGGATCACTCATGTACGCCTTGACAGGAAATAGACCTGATATAGCATACG
CGGTACACCAGGCAGCACGTCGTATGGAAGACCCATGTCGGAAATACTTC
AGTACATGCAAGCGCATTTTTCGTTATCTCAGTACGGTGCCTGACCTCGG
CATTATGTTCGCCGGTAGGAGTAATGGTCACTGTCTGGAAGGAATCGTTG
ATGCCAACTGGGCGGAAGATGTCTACGACCGAAAGTCCACAACAGGGTAC
ATATTCAAACTAGACGGCGGTGCGATAAGTTGGTGCTCTAGGAAGCAACA
GTTAGTCACGTGGTCCAGTACAGAGACAGAGTACGTTGCTGCAGGAGAAG
GGGGAAAGGAGATGGTATATCTTAGGGAGTTGCTAGAATCGATAGGTTTC
GGATGCAAGGGGAGCACGACATTGTTTGAGAACAATAAATCAGTTATTAA
TCTCAGTAAGGGATCTGGCGCACACTGCCGGACAAAGCACATCGGATTGC
GCTGGCACGGAATTCGAGAGAGGATCCGGGAAGGACTATTGAAAATATAA
back to top