mRNA_H-paniculata_contig22307.5935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22307.5935.1
Unique NamemRNA_H-paniculata_contig22307.5935.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: A0A6H5KMW9_9PHAE (Vacuolar protein sorting-associated protein 35 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMW9_9PHAE)

HSP 1 Score: 426 bits (1094), Expect = 5.610e-141
Identity = 208/227 (91.63%), Postives = 220/227 (96.92%), Query Frame = 1
Query:    1 QDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGEGGTVDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDTLPRDMDAFRMLNDCVTRLVAERPKLELSEIILMQVCM 681
            +DILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPD GSPYEG+GG+VDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYK DILP +LEQVVGCKDTIAQSYLMDCLIQVFPDEFHLA+L  FL+GVCRLKEKVRVRP+LESLMERIGNYVEEHPD LP+D+DAFR+LNDCVTRLV+ERPKLELSEIILMQV +
Sbjct:  123 RDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGDGGSVDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKTDILPPVLEQVVGCKDTIAQSYLMDCLIQVFPDEFHLASLEAFLDGVCRLKEKVRVRPVLESLMERIGNYVEEHPDALPKDVDAFRLLNDCVTRLVSERPKLELSEIILMQVAL 349          
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: A0A7S2HPW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPW3_9STRA)

HSP 1 Score: 264 bits (674), Expect = 3.590e-86
Identity = 132/213 (61.97%), Postives = 166/213 (77.93%), Query Frame = 1
Query:   40 VQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGE-GGTVDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDT-LPRDMDAFRMLNDCVTRLVAERPKLELSEIILMQ 672
            VQHPMRGLFLRNY +H+ RDKLPDVGS Y  + GG V DS++F+++NF E N+LWVRM  Q GP KDKKRRE+ER+DLR+LVGTNLVRLSQLEGVD   YK   LP ILEQV  CKD+IAQSYLMDC+I VFPD+FHLA L  FL+   +LKEKV VR ILES+M+R+  Y + +    +P D++AF++ N CVT+L+ ER  L+L+EI+ ++
Sbjct:    1 VQHPMRGLFLRNYLAHIARDKLPDVGSEYSIDAGGDVQDSLDFIIQNFSETNRLWVRMQNQ-GPVKDKKRREKERQDLRILVGTNLVRLSQLEGVDVHLYKETALPRILEQVANCKDSIAQSYLMDCIIHVFPDDFHLATLDAFLQTCTQLKEKVNVRGILESMMDRLSGYADGNKGVVIPDDIEAFQIFNQCVTKLLNERTNLDLAEILRLE 212          
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: W7TDU3_9STRA (Vacuolar protein sorting-associated protein 35 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDU3_9STRA)

HSP 1 Score: 282 bits (721), Expect = 4.340e-86
Identity = 139/227 (61.23%), Postives = 177/227 (77.97%), Query Frame = 1
Query:    1 QDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGE-GGTVDDSVEFVLENFVEANKLWVRMHGQ--KGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDTLPRDMDAFRMLNDCVTRLVAERPKLELSEIILMQ 672
            +DILKDL+EM+KGVQHPMRGLFLRNY S V+RDKLPDVG+PYEGE GG+V D+ EF+L+NF EAN+LW RM  Q     +KDKKRRE+ER++LR+LVGTNLVRLSQL+GV+ A YK  ILP +LEQVV CKDT+AQSYLM+C++QVF DEFH+A L  FL    +LKEKV VR ILE +M+R+  + E +P  +P  +  F M N CV++L+ ERP   + E++ +Q
Sbjct:  122 RDILKDLVEMSKGVQHPMRGLFLRNYLSQVSRDKLPDVGTPYEGEEGGSVQDAYEFILQNFSEANRLWCRMQQQPTNAHNKDKKRREKERQELRILVGTNLVRLSQLQGVEAATYKEHILPRLLEQVVQCKDTLAQSYLMECIVQVFGDEFHIATLDLFLAACTQLKEKVNVRAILEGVMDRLATFAEANPAAIPPHLRTFDMFNTCVSKLLEERPGYSVVEVLRLQ 348          
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: A0A7S2XXV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXV8_9STRA)

HSP 1 Score: 266 bits (681), Expect = 5.740e-84
Identity = 139/228 (60.96%), Postives = 170/228 (74.56%), Query Frame = 1
Query:    7 ILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGE------GGTVDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDTLPRDMDAFRMLNDCVTRLVAERPKLELSEIILMQ 672
            +L DLLEMTKGVQHPM GLFLR+Y +H TRDKLPDVGS Y         G  V D+ EFVL+NF EAN+LWVR+  Q G SKD+KRRERER+ LR+LVGTNLVRLSQLEG+D   Y + ILP ILEQV GC+D++AQ+YLMDC+IQVFPDEFHL  L PFL+ + +LKEKV VR ILESLMER+ N+ E  P+  P   + + +    VT L+  RP++ +SE IL+Q
Sbjct:  129 VLADLLEMTKGVQHPMWGLFLRHYLAHQTRDKLPDVGSEYADPEDPACGGSGVADAYEFVLQNFQEANRLWVRLQHQ-GASKDRKRRERERQALRILVGTNLVRLSQLEGIDQDTYAQVILPRILEQVSGCRDSLAQTYLMDCIIQVFPDEFHLTTLRPFLDTLTQLKEKVNVRTILESLMERLINFAENSPEDKPPGTEVYELFVVSVTSLLTNRPQMTMSEKILLQ 355          
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: A0A7S3H9X6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9X6_9STRA)

HSP 1 Score: 270 bits (690), Expect = 7.100e-83
Identity = 131/226 (57.96%), Postives = 177/226 (78.32%), Query Frame = 1
Query:    1 QDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGEGGTVDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDT--LPRDMDAFRMLNDCVTRLVAERPKLELSEIILMQ 672
            +DILKDL+E+ KGVQHPMRGLFLRNY + V++ KLPDVGSPYEG GG++ D+  F+L+NF+E N+LWVR+    G +KDKK+RE+ER DLR+LVGTNLVRLSQLEG+D + YK ++LP ILE+V+ CKDTIAQSYLMDC+IQVFPD+FHL  L   L+ V  LKEKV VR ILE+LM+R+  +   +  T  +  ++++F++ NDC+T L+ +R  + L+E + +Q
Sbjct:  124 KDILKDLIEVIKGVQHPMRGLFLRNYLTLVSKGKLPDVGSPYEGVGGSIQDAYSFLLQNFIETNRLWVRLQTA-GVNKDKKKREKERMDLRILVGTNLVRLSQLEGLDVSDYKSNVLPKILEEVLSCKDTIAQSYLMDCIIQVFPDDFHLNTLELLLQTVSSLKEKVNVRAILEALMDRLAAHAANNAATGAVGAEINSFKLFNDCITTLIEDRASMSLTETLRLQ 348          
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: A0A835Z7F2_9STRA (Vacuolar protein sorting-associated protein 35 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F2_9STRA)

HSP 1 Score: 273 bits (699), Expect = 8.100e-82
Identity = 147/281 (52.31%), Postives = 175/281 (62.28%), Query Frame = 1
Query:    7 ILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGEGGT-----------------------------------------------------------VDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDTLPRDMDAFRMLNDCVTRLVAERPKLELSEIILMQ 672
            +L DLLEM KGVQ PMRGLFLR Y S VT+DKLPD G+PYEGEGG+                                                           V D +EFVLENF E+N+LWVRMH Q    KDK+RRERER+DLR+LVGTNL RLS+LEGVD   YK  +LP +L+QVV C+DTIAQSYLMDC++Q FPDEFH+ AL  FLE + +LKEKVRVR ILESLM+R+  Y E     LP D   F  LNDCV RL+ ERP ++L+EI+L+Q
Sbjct:  137 VLSDLLEMAKGVQQPMRGLFLRFYLSQVTKDKLPDTGTPYEGEGGSASATAAPAQLTARASCASVRSAATVELEQFKGAPANRVNAQLIARPARIRLRNGLSARSVSDCLEFVLENFAESNRLWVRMHAQ-AAVKDKRRRERERRDLRVLVGTNLERLSELEGVDAEMYKTAVLPRVLDQVVTCRDTIAQSYLMDCIVQGFPDEFHIHALPVFLESLLKLKEKVRVRLILESLMQRLSKYAETDGSALPGDASTFTQLNDCVARLIQERPSMDLAEIVLLQ 416          
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: A0A812U7I6_SYMMI (VPS35B protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U7I6_SYMMI)

HSP 1 Score: 259 bits (661), Expect = 6.390e-80
Identity = 126/204 (61.76%), Postives = 158/204 (77.45%), Query Frame = 1
Query:   61 LFLRNYFSHVTRDKLPDVGSPYEGEGGTVDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDTLPRDMDAFRMLNDCVTRLVAERPKLELSEIILMQ 672
            LFLRNY SH T+ +LPDVGSP+EG GG+V D+ +FVL NF E+N+LWVR+  Q G SKD+K+RE+ER+DLR+LVGTNLVRLSQLEG+D  +YK  +LP ILEQVV CKDTIAQSYLMDC IQVFPDEFHLA L PFL+    LK+KV VR ILES+M+R+  Y   +   +P ++ AF+M NDC+T L+  R  L L+E + +Q
Sbjct:    1 LFLRNYLSHCTKSRLPDVGSPFEGVGGSVQDATDFVLTNFTESNRLWVRLQNQ-GASKDRKKREKERQDLRILVGTNLVRLSQLEGLDLHEYKSSVLPRILEQVVLCKDTIAQSYLMDCTIQVFPDEFHLATLEPFLQTCTNLKDKVNVRAILESMMDRLAYYAASNSGQIPAEVKAFKMFNDCITTLIENRTNLTLTETLRLQ 203          
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: L8H265_ACACA (Vacuolar protein sorting-associated protein 35 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H265_ACACA)

HSP 1 Score: 261 bits (668), Expect = 7.300e-79
Identity = 122/225 (54.22%), Postives = 167/225 (74.22%), Query Frame = 1
Query:    1 QDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGEGGTVDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDTLPRDMDAFRMLNDCVTRLVAERPKLELSEIILMQV 675
            +D+L+DL+EM +GVQHP RGLFLR Y S +T+DKLPDVGS YEG GG V+DS+ F+L+NF E NKLWVRM  Q GP +DK RRE+ER++LRLLVG NL RLSQL+GVD A YK  +LP I EQVV C+D IAQ YLM+ LIQ+FPD FHL  L PFL+   +L+  V V+ I+ S+++R+ N+  + P   PR++D F++ +  +T ++ +RPK+   +++ + V
Sbjct:  155 KDVLRDLVEMCRGVQHPTRGLFLRTYLSEMTKDKLPDVGSDYEGAGGDVNDSISFILQNFTEMNKLWVRMQHQ-GPVRDKARREQERRELRLLVGKNLARLSQLDGVDVAIYKEAVLPRITEQVVNCRDQIAQQYLMEILIQIFPDHFHLQTLEPFLDTCAKLQPTVDVKSIVVSMLDRLANFAAQEPTNFPREIDVFKIFSSAITNIIEQRPKMTAEDMLALYV 378          
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: G5DWG7_SILLA (Vacuolar sorting protein (Fragment) n=2 Tax=Silene latifolia TaxID=37657 RepID=G5DWG7_SILLA)

HSP 1 Score: 245 bits (625), Expect = 7.410e-76
Identity = 120/225 (53.33%), Postives = 162/225 (72.00%), Query Frame = 1
Query:    1 QDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGEGGTVDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDTLPR--DMDAFRMLNDCVTRLVAERPKLELSEIILM 669
            +DILKDL+EM +G+QHP+RGLFLR+Y S V+RDKLPD+GS YEG+  TV D+VEFV++NF E NKLWVRM  Q GP+++K RRE+ER +LR LVG NL  LSQ+EGVD   YK  +LP +LEQVV CKD +AQ YLMDC++QVFPDE+HL  L   L    +L+  V ++ +L SLMER+ NY    P+ LP    +DAF  LN  + +++  +P + +  ++ +
Sbjct:  124 KDILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVTDAVEFVIQNFTEMNKLWVRMRHQ-GPAREKDRREKERSELRDLVGKNLHVLSQIEGVDLDMYKDTVLPRVLEQVVNCKDDLAQYYLMDCMVQVFPDEYHLQTLDILLGACPQLQPTVDIKSVLSSLMERLSNYAATSPEVLPEFLHVDAFSRLNSVIGKVIEAQPDMPVVAVVTL 347          
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Match: A0A176W3K4_MARPO (Vacuolar protein sorting-associated protein 35 n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176W3K4_MARPO)

HSP 1 Score: 249 bits (637), Expect = 1.140e-74
Identity = 123/229 (53.71%), Postives = 167/229 (72.93%), Query Frame = 1
Query:    1 QDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGEGGTVDDSVEFVLENFVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDGAKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEGVCRLKEKVRVRPILESLMERIGNYVEEHPDTLPR--DMDAFRMLNDCVTRLVAERPKLELSEIILMQVCM 681
            +D+LKDL+EM++GVQHP+RGLFLR+Y S ++RDKLPDVGS YEGEGG V D+VEFVL+NF E NKLWVRM  Q GP+++K++RE+ER +LR LVG NL  LSQLEGVD   YK  +LP +LEQVV CKD +AQ YLMDC+IQVFPD+FHL  L   L    +L+  V ++ ++  LMER+ NY    P+ LP    ++AF  L++ V +++  +P++ L   + + V +
Sbjct:   84 KDVLKDLVEMSRGVQHPIRGLFLRSYLSQISRDKLPDVGSEYEGEGGNVMDAVEFVLQNFTEMNKLWVRMQHQ-GPAREKEKREKERSELRDLVGKNLHVLSQLEGVDLEMYKEVVLPRVLEQVVNCKDDLAQYYLMDCIIQVFPDDFHLQTLETLLGACPQLQPNVDIKTVMSQLMERLSNYAASSPEVLPEFLQVEAFTKLSNSVVKVIEAQPEMSLVGAVSLHVAL 311          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22307.5935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMW9_9PHAE5.610e-14191.63Vacuolar protein sorting-associated protein 35 n=2... [more]
A0A7S2HPW3_9STRA3.590e-8661.97Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TDU3_9STRA4.340e-8661.23Vacuolar protein sorting-associated protein 35 n=4... [more]
A0A7S2XXV8_9STRA5.740e-8460.96Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3H9X6_9STRA7.100e-8357.96Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835Z7F2_9STRA8.100e-8252.31Vacuolar protein sorting-associated protein 35 n=1... [more]
A0A812U7I6_SYMMI6.390e-8061.76VPS35B protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
L8H265_ACACA7.300e-7954.22Vacuolar protein sorting-associated protein 35 n=1... [more]
G5DWG7_SILLA7.410e-7653.33Vacuolar sorting protein (Fragment) n=2 Tax=Silene... [more]
A0A176W3K4_MARPO1.140e-7453.71Vacuolar protein sorting-associated protein 35 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22307contigH-paniculata_contig22307:648..3663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score405.6
Seed ortholog evalue1.5e-110
Seed eggNOG ortholog2880.D8LQA0
KEGG koko:K18468
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of late endosome to lysosome transport
EggNOG OGsKOG1107@1,KOG1107@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size684
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22307.5935.1prot_H-paniculata_contig22307.5935.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22307 648..3636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.4064538-CDS-H-paniculata_contig22307:647..7491622929618.4064538-CDS-H-paniculata_contig22307:647..749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 648..749 -
1691480937.8133914-CDS-H-paniculata_contig22307:647..7491691480937.8133914-CDS-H-paniculata_contig22307:647..749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 648..749 -
1622929618.4179177-CDS-H-paniculata_contig22307:1039..11951622929618.4179177-CDS-H-paniculata_contig22307:1039..1195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 1040..1195 -
1691480937.8241792-CDS-H-paniculata_contig22307:1039..11951691480937.8241792-CDS-H-paniculata_contig22307:1039..1195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 1040..1195 -
1622929618.428744-CDS-H-paniculata_contig22307:1673..18801622929618.428744-CDS-H-paniculata_contig22307:1673..1880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 1674..1880 -
1691480937.8335025-CDS-H-paniculata_contig22307:1673..18801691480937.8335025-CDS-H-paniculata_contig22307:1673..1880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 1674..1880 -
1622929618.4440498-CDS-H-paniculata_contig22307:2926..30501622929618.4440498-CDS-H-paniculata_contig22307:2926..3050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 2927..3050 -
1691480937.8430305-CDS-H-paniculata_contig22307:2926..30501691480937.8430305-CDS-H-paniculata_contig22307:2926..3050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 2927..3050 -
1622929618.4643955-CDS-H-paniculata_contig22307:3568..36361622929618.4643955-CDS-H-paniculata_contig22307:3568..3636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 3569..3636 -
1691480937.855804-CDS-H-paniculata_contig22307:3568..36361691480937.855804-CDS-H-paniculata_contig22307:3568..3636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22307 3569..3636 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.4802384-UTR-H-paniculata_contig22307:3636..36631622929618.4802384-UTR-H-paniculata_contig22307:3636..3663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22307 3637..3663 -
1691480937.867151-UTR-H-paniculata_contig22307:3636..36631691480937.867151-UTR-H-paniculata_contig22307:3636..3663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22307 3637..3663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22307.5935.1

>prot_H-paniculata_contig22307.5935.1 ID=prot_H-paniculata_contig22307.5935.1|Name=mRNA_H-paniculata_contig22307.5935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MTKGVQHPMRGLFLRNYFSHVTRDKLPDVGSPYEGEGGTVDDSVEFVLEN
FVEANKLWVRMHGQKGPSKDKKRRERERKDLRLLVGTNLVRLSQLEGVDG
AKYKRDILPVILEQVVGCKDTIAQSYLMDCLIQVFPDEFHLAALGPFLEG
VCRLKEKVRVRPILESLMERIGNYVEEHPDTLPRDMDAFRMLNDCVTRLV
AERPKLELSEIILMQVCM*
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mRNA from alignment at H-paniculata_contig22307:648..3663-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22307.5935.1 ID=mRNA_H-paniculata_contig22307.5935.1|Name=mRNA_H-paniculata_contig22307.5935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3016bp|location=Sequence derived from alignment at H-paniculata_contig22307:648..3663- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACATCTTGAAGGATTTACTGGAGATGACGAAGGGCGTGCAGCACCC AATGCGAGGACTATTTCTGAGGAACTATTTTTCACACGTGACGAGGTTAG ATGCATTGAGTTATACGAAGTACAGAGGTTGACGCTTCCGGCACTCGCGC CTCTTCCAGTTACAGATTTTTTTGAAAGTGTATATTTTCATGTACATACC TACCTATACATGTCATGATGTGTGACGTTAGATCCCCCAGAGGTAGGTAT CGCCCGACCTACCAGGGTACAAACATGCTTTACAACGCGACTATATATCG AGAATGGAGAATGACCTTACGCGGTCGGAAAGAGAAGTCGTCAATCGACA GACAGATAGATATCGGTATGGTCTTTCCAACGGTAGACGTATTATTGTTC GTAGCTAAAAAGAGCCCTAGGTAGCCACGTCAAGATAGTCAATCGCACTC GAAATGAAAACACGTGCTCATATCGGTGGTGAAATTGGTACTCACTTGTG GTTTGTTTTGGGGTGTATCCATCTCATTCTATTTTGTCAACAACCAGGTT CAATCAAATCACATCATATTGACATCATTCATCAACTAAAAAATCAAAAT CACATCAAATTAGGGATAAGCTTCCGGACGTTGGTTCGCCGTACGAGGGC GAGGGAGGCACTGTTGATGACAGCGTCGAGTTCGTGTTGGAAAACTTTGT GGAGGCGAACAAGCTCTGGGTGCGCATGCACGGACAGGTGAGACGGGTGG CAGGCAGGCAGGTGTGTGTAATTGACGAGGAGGGGAGTGCGGTTTGATGG GGTGGGTGTGGCATGTCTTCAAATAGCTGTTGCCCGACTCCGGTTTTTCG GCCGTATGGACGTTAAAATTAGCCTTTTAGCGACTTGCCGCCGACCCGGT TCGGGAGCCGCTGCAAAGAGAGGGCGGTTCAGTCGTTCGGCGGTAAGTCG AGGTTTGCCGGTAAGAAATGATGGCTGATTTACGCAAATAGTCTTTTCCT CCTCAAAAGTTTTCCCTGCGGGGATTCTCGTGGGGGAGGCTTCCGGCGAG CCGGCTCCGTTAGGCCTTTGGCCTATTTTTCCCCCTGGAGTGTGATATCG AACGTCACGGGTCGCTGACATGAGGAGAGGAACCTTTGAATGACGAACGG TGGTGGTAGGTTGTAAGGTCTGTGACTCTGGTACAAAATTCGACTTCGTT ACGTCCTCACTAATGCGGACCTACCTACCCCGGTGAGGTCATACTCCAAT CCATCCTATATCCAATTTTGTTTCTTCACTTATGCGGGGATGGATGCTGT GGGGGGGTCGAGTTGCCCGTCTTAACTTGTTCCTATTTTGCCGGCGGGAT GTGTTTGATGTCGCCCCCTTGAAGGTGATACTGAATACTGTCAATCCAAC TCAGAGTTCTACGTTGGTTGTCGTTTAGGTGCAGCGCTTGAGTATTTCGT CTGTATGTTATCGCCATCAACATCGTTACTATGATCATCGCTGTACAATC ATAATGAGTGTTATTATCGTCACTAGAAGTAGAGTATGACTACCTACCCC CGTGAGGTCATACTCCAATCCATGCTTTATCCAACTTCAAATTCGAGGGC CTGCTGCGCTCGCACAAAGATTCGTTTTTCTGTAAGTTACTTGGTTACAG ATTGGAGAAAAAATATTTCGAATTGATGCCTATGACGATATTACTGTACT AGATGATACAGATTATCATCCATCATCGTTATCATCAAGTATCGCCTGCT TGTTTGCCCGCTCGCACGCCCGCTGGGTATAAGAAGGGTCCCTCCAAGGA CAAGAAGCGGCGAGAGAGAGAGCGCAAAGACTTGCGCCTGTTGGTGGGCA CCAACTTGGTTCGGCTGTCTCAGCTGGAGGGTGTGGACGGGGCTAAGTAC AAGCGGGATATACTGCCGGTGATCTTGGAACAGGTGGTGGGATGCAAGGA TACCATTGCACAGAGTTATCTCATGGATTGCTTGATACAGGTAAGATCTC ATTTGACGGGAGCGCTTTATATAGGCAAACGATAAAATTGTAGCTCTGTT GAGGTGTCCCTTTTGTTTTGTTTTTCCGGTTCGGGGGGGGGTCCAGATGG AATATGATGTAGATCTCTAGCATGTGTTGTTACTTGAGTATTAATTGACA CTGGATGCTGCTGGTTCAGAAAACGTGTTCAATATTATGCAGGTGGAGGG GCGGTCGATCCCCGTCCAGAATATGAGAGAGTGGTCGGCAAGCATTGAAA TGCCGCTGTCTGACTGGATAAATGAGATGTAAGATATGGACCAGGGTTGC CGAGCAGTGCTCGCTTGTCTCTCTCTCTCTCTCCCCCTCTCTCATTTGTG GCCCGGGATTTCGGAACAATGTTGCAATGGTGACAAAGAAGATAAAACTA TTATATCCGTACTTATTTACACGATGCCACTCATTGCGTCGATTCTGTAT AATATGTGTTCGACTCAGGTATTTCCGGATGAATTTCACCTAGCGGCTTT AGGGCCATTTTTGGAAGGAGTCTGTCGGCTCAAGGAGAAGGTTAGGGTAC GGCCGATACTGGAGAGCCTGATGGAGCGGATCGGGAACTATGTGGAGGAG CACCCGGACACGCTTCCCAGAGACGTGAGATATGGGTGATGGATGGGTGA CAGAAGCGATGACACGCCAGGTCTCGGTTCCCAGGTTGATTGAAACTGAC TCGTGGGTAACATTTCTTCTATTGCGAAGAAGCTTGAAGCAATCCGGGGT ATTGGAAAATTGGGCGATTAATAATTCAGAGTCGGGACGATTTGGATTCG GTCTGATTCGAGGTTCTGCTTGTTGATGGCCTATTATTTCTTCACGAGGG TCGGTCCGACGTGAGCCTTTGCTGTGTGGTGCGTTCGATTTTCGTACCGT AAATGCGACGACAGATGGATGCGTTCCGAATGCTGAACGATTGCGTCACG CGGTTAGTGGCGGAGAGGCCTAAGCTTGAGCTGTCCGAGATTATCCTCAT GCAGGTATGTATGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22307:648..3663-

>mRNA_H-paniculata_contig22307.5935.1 ID=mRNA_H-paniculata_contig22307.5935.1|Name=mRNA_H-paniculata_contig22307.5935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig22307:648..3663- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAGGGCGTGCAGCACCCAATGCGAGGACTATTTCTGAGGAACTA
TTTTTCACACGTGACGAGATGACGAAGGGCGTGCAGCACCCAATGCGAGG
ACTATTTCTGAGGAACTATTTTTCACACGTGACGAGGGATAAGCTTCCGG
ACGTTGGTTCGCCGTACGAGGGCGAGGGAGGCACTGTTGATGACAGCGTC
GAGTTCGTGTTGGAAAACTTTGTGGAGGCGAACAAGCTCTGGGTGCGCAT
GCACGGACAGGGATAAGCTTCCGGACGTTGGTTCGCCGTACGAGGGCGAG
GGAGGCACTGTTGATGACAGCGTCGAGTTCGTGTTGGAAAACTTTGTGGA
GGCGAACAAGCTCTGGGTGCGCATGCACGGACAGAAGGGTCCCTCCAAGG
ACAAGAAGCGGCGAGAGAGAGAGCGCAAAGACTTGCGCCTGTTGGTGGGC
ACCAACTTGGTTCGGCTGTCTCAGCTGGAGGGTGTGGACGGGGCTAAGTA
CAAGCGGGATATACTGCCGGTGATCTTGGAACAGGTGGTGGGATGCAAGG
ATACCATTGCACAGAGTTATCTCATGGATTGCTTGATACAGAAGGGTCCC
TCCAAGGACAAGAAGCGGCGAGAGAGAGAGCGCAAAGACTTGCGCCTGTT
GGTGGGCACCAACTTGGTTCGGCTGTCTCAGCTGGAGGGTGTGGACGGGG
CTAAGTACAAGCGGGATATACTGCCGGTGATCTTGGAACAGGTGGTGGGA
TGCAAGGATACCATTGCACAGAGTTATCTCATGGATTGCTTGATACAGGT
ATTTCCGGATGAATTTCACCTAGCGGCTTTAGGGCCATTTTTGGAAGGAG
TCTGTCGGCTCAAGGAGAAGGTTAGGGTACGGCCGATACTGGAGAGCCTG
ATGGAGCGGATCGGGAACTATGTGGAGGAGCACCCGGACACGCTTCCCAG
AGACGTATTTCCGGATGAATTTCACCTAGCGGCTTTAGGGCCATTTTTGG
AAGGAGTCTGTCGGCTCAAGGAGAAGGTTAGGGTACGGCCGATACTGGAG
AGCCTGATGGAGCGGATCGGGAACTATGTGGAGGAGCACCCGGACACGCT
TCCCAGAGACATGGATGCGTTCCGAATGCTGAACGATTGCGTCACGCGGT
TAGTGGCGGAGAGGCCTAAGCTTGAGCTGTCCGAGATTATCCTCATGCAG
GTATGTATGTAGATGGATGCGTTCCGAATGCTGAACGATTGCGTCACGCG
GTTAGTGGCGGAGAGGCCTAAGCTTGAGCTGTCCGAGATTATCCTCATGC
AGGTATGTATGTAG
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