mRNA_H-paniculata_contig22280.5923.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: D7FSF7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF7_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.150e-25 Identity = 58/75 (77.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query: 1 NVHEK---AVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
+ H K AVLCCV EK MKFLNKNAYIQTA+FGYSFCTAAKKAFFLIARNIMRV AVGVVSE+VLILG
Sbjct: 442 DTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTAAKKAFFLIARNIMRVMAVGVVSEVVLILG 516
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S3Y6D2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6D2_HETAK) HSP 1 Score: 108 bits (269), Expect = 1.250e-25 Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1
Query: 1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
N + VLC +QCC+WCLEK MKFLNKNAYIQTA+FG SFC+AAK AFFLIARNI+R+AAV +V + VL++G
Sbjct: 520 NKLAQIVLCVIQCCMWCLEKCMKFLNKNAYIQTAIFGKSFCSAAKAAFFLIARNILRIAAVSLVGDFVLLIG 591
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S2D002_9STRA (Choline transporter-like protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D002_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.520e-24 Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
N AVLCC+QCC +EK MKF+NKNAYIQ A+FGYSFC AA+KAF+LI RNI+R+AAVG+VSEIV I+G
Sbjct: 519 NRLASAVLCCIQCCXXXVEKCMKFINKNAYIQIAIFGYSFCKAARKAFWLILRNILRIAAVGIVSEIVSIMG 590
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A6I9NT74_9TELE (Choline transporter-like protein n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NT74_9TELE) HSP 1 Score: 93.2 bits (230), Expect = 8.020e-23 Identity = 40/72 (55.56%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
N K +LCC++CC WCLEK +KF+N+NAYI TA++G +FCT+AK AFFL+ RN++RVA + V++ +L LG
Sbjct: 35 NKCTKFLLCCLKCCFWCLEKFVKFINRNAYIMTAIYGNNFCTSAKNAFFLLMRNMIRVAVLDKVTDFLLFLG 106
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A835Z9G9_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G9_9STRA) HSP 1 Score: 100 bits (248), Expect = 8.440e-23 Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 7 HEK---AVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILGLV 222
H K A+LCC EK MKFLNKNAYIQTA+FGYSFC AA+KAFFLIARNI+RVAAVG+VSE+V ILGL+
Sbjct: 474 HNKLLSALLCCXXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCKAARKAFFLIARNILRVAAVGMVSELVAILGLI 548
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: W7TBK4_9STRA (Choline transporter-like protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBK4_9STRA) HSP 1 Score: 100 bits (248), Expect = 8.670e-23 Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
N + +LCC QC WCLEK++KF+NKNAYIQTA+ G SFCT+ K AFFLIARNIMR+ AV +VSE V+I+G
Sbjct: 495 NKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIG 566
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S2WDL0_9STRA (Choline transporter-like protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDL0_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.090e-22 Identity = 43/67 (64.18%), Postives = 57/67 (85.07%), Query Frame = 1
Query: 22 LCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILGLV 222
LCC QCCLWCLEK +K ++K+AYIQTALFGY FC AA+KAFFLI RN+ ++AAV +V ++V++L L+
Sbjct: 1 LCCAQCCLWCLEKCLKMISKHAYIQTALFGYPFCKAARKAFFLILRNLGQIAAVTIVGQLVVVLILI 67
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S4TAG2_9STRA (Choline transporter-like protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TAG2_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.180e-22 Identity = 43/66 (65.15%), Postives = 58/66 (87.88%), Query Frame = 1
Query: 19 VLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
+L +QCCLWC+EK MKF+NKNAYIQTA+FGYSFC A++ AFFLI RN++R++AV +VS+ VL++G
Sbjct: 489 ILRVIQCCLWCIEKCMKFINKNAYIQTAIFGYSFCKASRMAFFLILRNVLRISAVSLVSDFVLLIG 554
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S2LDM7_9STRA (Choline transporter-like protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDM7_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 4.280e-22 Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 13 KAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILGLVRDVDI 237
KAVL ++CCLWC+EK +KF+NKNAYIQTA+FGYSFC A++AF L+ RN++RV AV VV E VL +G + V I
Sbjct: 256 KAVLKAIRCCLWCVEKCLKFINKNAYIQTAIFGYSFCKGARRAFTLLLRNVLRVTAVSVVCEFVLFVGKIFIVTI 330
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A6V2WBV2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK) HSP 1 Score: 97.4 bits (241), Expect = 7.510e-22 Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
N A+LC +QCCLWC EK MKFLNKNAYI TALF FC AAK+AF LIARNI RVAAV +VS+ ++I+
Sbjct: 448 NKFADALLCVLQCCLWCFEKCMKFLNKNAYIHTALFSDKFCHAAKEAFLLIARNIARVAAVSLVSQFIMIIA 519 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22280.5923.1 >prot_H-paniculata_contig22280.5923.1 ID=prot_H-paniculata_contig22280.5923.1|Name=mRNA_H-paniculata_contig22280.5923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLback to top mRNA from alignment at H-paniculata_contig22280:466..705+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22280.5923.1 ID=mRNA_H-paniculata_contig22280.5923.1|Name=mRNA_H-paniculata_contig22280.5923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig22280:466..705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22280:466..705+ >mRNA_H-paniculata_contig22280.5923.1 ID=mRNA_H-paniculata_contig22280.5923.1|Name=mRNA_H-paniculata_contig22280.5923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig22280:466..705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |