mRNA_H-paniculata_contig22280.5923.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22280.5923.1
Unique NamemRNA_H-paniculata_contig22280.5923.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: D7FSF7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF7_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.150e-25
Identity = 58/75 (77.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 NVHEK---AVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
            + H K   AVLCCV       EK MKFLNKNAYIQTA+FGYSFCTAAKKAFFLIARNIMRV AVGVVSE+VLILG
Sbjct:  442 DTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTAAKKAFFLIARNIMRVMAVGVVSEVVLILG 516          
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S3Y6D2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6D2_HETAK)

HSP 1 Score: 108 bits (269), Expect = 1.250e-25
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
            N   + VLC +QCC+WCLEK MKFLNKNAYIQTA+FG SFC+AAK AFFLIARNI+R+AAV +V + VL++G
Sbjct:  520 NKLAQIVLCVIQCCMWCLEKCMKFLNKNAYIQTAIFGKSFCSAAKAAFFLIARNILRIAAVSLVGDFVLLIG 591          
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S2D002_9STRA (Choline transporter-like protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D002_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.520e-24
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
            N    AVLCC+QCC   +EK MKF+NKNAYIQ A+FGYSFC AA+KAF+LI RNI+R+AAVG+VSEIV I+G
Sbjct:  519 NRLASAVLCCIQCCXXXVEKCMKFINKNAYIQIAIFGYSFCKAARKAFWLILRNILRIAAVGIVSEIVSIMG 590          
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A6I9NT74_9TELE (Choline transporter-like protein n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NT74_9TELE)

HSP 1 Score: 93.2 bits (230), Expect = 8.020e-23
Identity = 40/72 (55.56%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
            N   K +LCC++CC WCLEK +KF+N+NAYI TA++G +FCT+AK AFFL+ RN++RVA +  V++ +L LG
Sbjct:   35 NKCTKFLLCCLKCCFWCLEKFVKFINRNAYIMTAIYGNNFCTSAKNAFFLLMRNMIRVAVLDKVTDFLLFLG 106          
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A835Z9G9_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.440e-23
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    7 HEK---AVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILGLV 222
            H K   A+LCC        EK MKFLNKNAYIQTA+FGYSFC AA+KAFFLIARNI+RVAAVG+VSE+V ILGL+
Sbjct:  474 HNKLLSALLCCXXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCKAARKAFFLIARNILRVAAVGMVSELVAILGLI 548          
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: W7TBK4_9STRA (Choline transporter-like protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBK4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.670e-23
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
            N   + +LCC QC  WCLEK++KF+NKNAYIQTA+ G SFCT+ K AFFLIARNIMR+ AV +VSE V+I+G
Sbjct:  495 NKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIG 566          
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S2WDL0_9STRA (Choline transporter-like protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDL0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.090e-22
Identity = 43/67 (64.18%), Postives = 57/67 (85.07%), Query Frame = 1
Query:   22 LCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILGLV 222
            LCC QCCLWCLEK +K ++K+AYIQTALFGY FC AA+KAFFLI RN+ ++AAV +V ++V++L L+
Sbjct:    1 LCCAQCCLWCLEKCLKMISKHAYIQTALFGYPFCKAARKAFFLILRNLGQIAAVTIVGQLVVVLILI 67          
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S4TAG2_9STRA (Choline transporter-like protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TAG2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.180e-22
Identity = 43/66 (65.15%), Postives = 58/66 (87.88%), Query Frame = 1
Query:   19 VLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
            +L  +QCCLWC+EK MKF+NKNAYIQTA+FGYSFC A++ AFFLI RN++R++AV +VS+ VL++G
Sbjct:  489 ILRVIQCCLWCIEKCMKFINKNAYIQTAIFGYSFCKASRMAFFLILRNVLRISAVSLVSDFVLLIG 554          
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A7S2LDM7_9STRA (Choline transporter-like protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDM7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.280e-22
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:   13 KAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILGLVRDVDI 237
            KAVL  ++CCLWC+EK +KF+NKNAYIQTA+FGYSFC  A++AF L+ RN++RV AV VV E VL +G +  V I
Sbjct:  256 KAVLKAIRCCLWCVEKCLKFINKNAYIQTAIFGYSFCKGARRAFTLLLRNVLRVTAVSVVCEFVLFVGKIFIVTI 330          
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Match: A0A6V2WBV2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 7.510e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFLIARNIMRVAAVGVVSEIVLILG 216
            N    A+LC +QCCLWC EK MKFLNKNAYI TALF   FC AAK+AF LIARNI RVAAV +VS+ ++I+ 
Sbjct:  448 NKFADALLCVLQCCLWCFEKCMKFLNKNAYIHTALFSDKFCHAAKEAFLLIARNIARVAAVSLVSQFIMIIA 519          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22280.5923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSF7_ECTSI1.150e-2577.33Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S3Y6D2_HETAK1.250e-2569.44Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S2D002_9STRA1.520e-2469.44Choline transporter-like protein n=1 Tax=Florencie... [more]
A0A6I9NT74_9TELE8.020e-2355.56Choline transporter-like protein n=1 Tax=Nototheni... [more]
A0A835Z9G9_9STRA8.440e-2370.67Choline transporter-like protein n=1 Tax=Tribonema... [more]
W7TBK4_9STRA8.670e-2365.28Choline transporter-like protein n=6 Tax=Monodopsi... [more]
A0A7S2WDL0_9STRA1.090e-2264.18Choline transporter-like protein (Fragment) n=1 Ta... [more]
A0A7S4TAG2_9STRA1.180e-2265.15Choline transporter-like protein n=2 Tax=Ditylum b... [more]
A0A7S2LDM7_9STRA4.280e-2261.33Choline transporter-like protein n=1 Tax=Leptocyli... [more]
A0A6V2WBV2_HETAK7.510e-2265.28Choline transporter-like protein n=1 Tax=Heterosig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22280contigH-paniculata_contig22280:466..705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog2880.D7FSF7
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.0572693-CDS-H-paniculata_contig22280:465..7051622929617.0572693-CDS-H-paniculata_contig22280:465..705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22280 466..705 +
1691480937.1955795-CDS-H-paniculata_contig22280:465..7051691480937.1955795-CDS-H-paniculata_contig22280:465..705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22280 466..705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22280.5923.1prot_H-paniculata_contig22280.5923.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22280 466..705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22280.5923.1

>prot_H-paniculata_contig22280.5923.1 ID=prot_H-paniculata_contig22280.5923.1|Name=mRNA_H-paniculata_contig22280.5923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
NVHEKAVLCCVQCCLWCLEKVMKFLNKNAYIQTALFGYSFCTAAKKAFFL
IARNIMRVAAVGVVSEIVLILGLVRDVDI*
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mRNA from alignment at H-paniculata_contig22280:466..705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22280.5923.1 ID=mRNA_H-paniculata_contig22280.5923.1|Name=mRNA_H-paniculata_contig22280.5923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig22280:466..705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTACACGAAAAGGCGGTTCTGTGCTGTGTACAGTGCTGCCTGTGGTG CCTGGAAAAGGTGATGAAATTCCTCAACAAGAACGCCTACATACAGACGG CACTTTTCGGGTACAGCTTCTGCACCGCCGCTAAGAAGGCGTTCTTCCTC ATCGCGCGCAATATCATGCGCGTTGCTGCGGTGGGCGTGGTATCCGAAAT TGTGTTGATTCTTGGACTGGTGAGAGATGTAGATATATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22280:466..705+

>mRNA_H-paniculata_contig22280.5923.1 ID=mRNA_H-paniculata_contig22280.5923.1|Name=mRNA_H-paniculata_contig22280.5923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig22280:466..705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTACACGAAAAGGCGGTTCTGTGCTGTGTACAGTGCTGCCTGTGGTG
CCTGGAAAAGGTGATGAAATTCCTCAACAAGAACGCCTACATACAGACGG
CACTTTTCGGGTACAGCTTCTGCACCGCCGCTAAGAAGGCGTTCTTCCTC
ATCGCGCGCAATATCATGCGCGTTGCTGCGGTGGGCGTGGTATCCGAAAT
TGTGTTGATTCTTGGACTGGTGAGAGATGTAGATATATAGAACGTACACG
AAAAGGCGGTTCTGTGCTGTGTACAGTGCTGCCTGTGGTGCCTGGAAAAG
GTGATGAAATTCCTCAACAAGAACGCCTACATACAGACGGCACTTTTCGG
GTACAGCTTCTGCACCGCCGCTAAGAAGGCGTTCTTCCTCATCGCGCGCA
ATATCATGCGCGTTGCTGCGGTGGGCGTGGTATCCGAAATTGTGTTGATT
CTTGGACTGGTGAGAGATGTAGATATATAG
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