mRNA_H-paniculata_contig22274.5921.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22274.5921.1
Unique NamemRNA_H-paniculata_contig22274.5921.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: D7FWC7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC7_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.290e-21
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 FQIQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            F+IQRAGPDTDHLPT+H CFN LVLP+YS  EKL RLLKRAI ECEGFGL+
Sbjct: 1159 FKIQRAGPDTDHLPTAHTCFNTLVLPEYSGEEKLTRLLKRAIAECEGFGLR 1209          
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: A0A6H5K2Y9_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.430e-20
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    7 IQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            IQRAGPDTDHLPT+H CFN L+LP+YS  EKL RLLKRA+TECEGFGL+
Sbjct: 1674 IQRAGPDTDHLPTAHTCFNTLMLPEYSGEEKLTRLLKRAVTECEGFGLR 1722          
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: A0A7S2GRV6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRV6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.140e-16
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 FQIQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            F+IQRAGPD+  LPTSH CFN L+LP+Y S +KL   L RAI ECEGFGL+
Sbjct:   51 FKIQRAGPDSMQLPTSHTCFNTLLLPEYDSYDKLVDRLSRAILECEGFGLQ 101          
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: W7TN24_9STRA (Ubiquitin protein ligase e3a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN24_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.390e-16
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    7 IQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            IQRAGPD+DHLPT+H CFN L+LP+Y S EKL+  L +AI+EC GFGL+
Sbjct: 1386 IQRAGPDSDHLPTAHTCFNTLLLPEYGSKEKLKERLMKAISECRGFGLQ 1434          
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: U6GKA1_EIMAC (HECT domain-containing protein n=1 Tax=Eimeria acervulina TaxID=5801 RepID=U6GKA1_EIMAC)

HSP 1 Score: 71.6 bits (174), Expect = 2.280e-15
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    7 IQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            + R G DTD LPTSH CFN L+LPDYSS EK++RLL  AI  C GFGL+
Sbjct:   20 VGRHGLDTDRLPTSHTCFNFLLLPDYSSQEKMQRLLLIAIQNCRGFGLR 68          
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: A0A7S4QMC4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QMC4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.390e-15
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 FQIQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            F+IQRAGPD+ HLPTSH CFN L+LPDY S +KL   +  A+ ECEGFGL+
Sbjct:  392 FKIQRAGPDSMHLPTSHTCFNTLLLPDYDSYDKLVDRVSHAVVECEGFGLQ 442          
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: F0XWH0_AURAN (HECT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWH0_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 3.990e-15
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 FQIQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            F+IQRAGPD+ +LPTSH CFN L+LPDY   +K+  LL  AI ECEGFGL+
Sbjct:  341 FRIQRAGPDSSNLPTSHTCFNTLLLPDYDPPDKVAHLLNIAIRECEGFGLQ 391          
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: A0A482UR49_9ARCH (HECT domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UR49_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 6.130e-15
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 FQIQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            F IQRAGPDT+ LPT+ VCF+VL+LP+Y+S  KL   L +AI EC GFGLK
Sbjct:   85 FTIQRAGPDTNKLPTASVCFHVLLLPEYASEAKLRDRLTKAIEECTGFGLK 135          
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: A0A7S0SGJ8_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGJ8_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 6.510e-15
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 FQIQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            F +QR+GPDT HLPTSH CFNVL+LP+YSS EKL   L  AI   EGFGL+
Sbjct:  505 FVVQRSGPDTSHLPTSHTCFNVLLLPEYSSREKLRERLLVAIANAEGFGLQ 555          
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Match: A0A7S2R9E4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9E4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.540e-15
Identity = 29/51 (56.86%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 FQIQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGLK 153
            F++ R GPD++ LPTSH CFN +++P+YSS  KL +L++ A++ECEGFGLK
Sbjct:  879 FKVHRMGPDSEQLPTSHTCFNTMLIPEYSSQAKLNKLVRLAVSECEGFGLK 929          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22274.5921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWC7_ECTSI5.290e-2180.39HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2Y9_9PHAE3.430e-2079.59HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2GRV6_9STRA1.140e-1666.67Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
W7TN24_9STRA5.390e-1667.35Ubiquitin protein ligase e3a n=2 Tax=Monodopsidace... [more]
U6GKA1_EIMAC2.280e-1565.31HECT domain-containing protein n=1 Tax=Eimeria ace... [more]
A0A7S4QMC4_9STRA2.390e-1564.71Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
F0XWH0_AURAN3.990e-1564.71HECT domain-containing protein n=1 Tax=Aureococcus... [more]
A0A482UR49_9ARCH6.130e-1564.71HECT domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S0SGJ8_9CHLO6.510e-1566.67Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S2R9E4_9STRA6.540e-1556.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22274contigH-paniculata_contig22274:1065..1220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue3.8e-17
Seed eggNOG ortholog2880.D7FWC7
KEGG koko:K10587,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929616.8747861-CDS-H-paniculata_contig22274:1064..12201622929616.8747861-CDS-H-paniculata_contig22274:1064..1220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22274 1065..1220 +
1691480937.1466258-CDS-H-paniculata_contig22274:1064..12201691480937.1466258-CDS-H-paniculata_contig22274:1064..1220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22274 1065..1220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22274.5921.1prot_H-paniculata_contig22274.5921.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22274 1065..1220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22274.5921.1

>prot_H-paniculata_contig22274.5921.1 ID=prot_H-paniculata_contig22274.5921.1|Name=mRNA_H-paniculata_contig22274.5921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
FQIQRAGPDTDHLPTSHVCFNVLVLPDYSSAEKLERLLKRAITECEGFGL
K*
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mRNA from alignment at H-paniculata_contig22274:1065..1220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22274.5921.1 ID=mRNA_H-paniculata_contig22274.5921.1|Name=mRNA_H-paniculata_contig22274.5921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig22274:1065..1220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCAGATCCAGAGGGCTGGACCGGATACGGACCACCTACCTACCTCCCA TGTCTGCTTCAACGTGCTGGTGCTGCCCGATTACTCCAGCGCCGAGAAGC TAGAGAGGCTCCTCAAACGGGCTATCACGGAGTGCGAGGGGTTCGGTCTC AAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22274:1065..1220+

>mRNA_H-paniculata_contig22274.5921.1 ID=mRNA_H-paniculata_contig22274.5921.1|Name=mRNA_H-paniculata_contig22274.5921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig22274:1065..1220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCAGATCCAGAGGGCTGGACCGGATACGGACCACCTACCTACCTCCCA
TGTCTGCTTCAACGTGCTGGTGCTGCCCGATTACTCCAGCGCCGAGAAGC
TAGAGAGGCTCCTCAAACGGGCTATCACGGAGTGCGAGGGGTTCGGTCTC
AAGTGATTTCAGATCCAGAGGGCTGGACCGGATACGGACCACCTACCTAC
CTCCCATGTCTGCTTCAACGTGCTGGTGCTGCCCGATTACTCCAGCGCCG
AGAAGCTAGAGAGGCTCCTCAAACGGGCTATCACGGAGTGCGAGGGGTTC
GGTCTCAAGTGA
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