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Homology
BLAST of mRNA_H-paniculata_contig2227.5920.1 vs. uniprot
Match: A0A6H5JAL8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAL8_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.110e-26 Identity = 128/213 (60.09%), Postives = 147/213 (69.01%), Query Frame = 1
Query: 616 QNMECDESTFSSVVHGCAQTREWDTACRLLEEMREAGFKPNDSCYYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQAAQVVWDLLEEMRRRGVPRDEFACGAAMEAFGKAGRVSEALRLLKEMRWDGPEANLQCYNSAIEACCRVDDIDGGMSLLAELG 1254
Q+M CDE+TFS+++HGCAQTR+WD A RLLEEM AG KPND+CYY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A++ LLE MR +GV D+ A+ AFG+ GR +AL L+ +R +G NLQC+N AIEAC DDIDGGMSLLAE+G
Sbjct: 1058 QSMPCDETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKGMCKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGE-----AEIAEILLEMMRSQGVELDDVGRSHALVAFGRGGRPDKALALMDNIRENGSPPNLQCFNGAIEACALADDIDGGMSLLAEMG 1265
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 126.3 |
| Seed ortholog evalue | 3.7e-26 |
| Seed eggNOG ortholog | 2880.D7G714 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 1395 |
| Cds size | 1395 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2227.5920.1 >prot_H-paniculata_contig2227.5920.1 ID=prot_H-paniculata_contig2227.5920.1|Name=mRNA_H-paniculata_contig2227.5920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=465bp
PPYFRFNSVINACAKAGDWALTLWLLSEIKAAGLKADIQSFNAALDACTK
GSNPEAAVALLGRMRAQGLAPDAISYQSAISACRRGGDSAAAVKLMKEME
GDGFCPGEAEYNLVIETVGREGDWDSAVDLLKQMKEDGIEPDVFSYGAAV
GACSKGRNPAMARALLQEMRELGHQPNKFCWNAVINVHARTGDTQGALAL
MKEMKQNMECDESTFSSVVHGCAQTREWDTACRLLEEMREAGFKPNDSCY
YALVSAACTAGELDLAQEFLSSMAEDGVPADSYAYSALLSGCGRAGEWER
ALRILREMKSGGVEPTLKVYTSVLRACAGAAEVGQAAQVVWDLLEEMRRR
GVPRDEFACGAAMEAFGKAGRVSEALRLLKEMRWDGPEANLQCYNSAIEA
CCRVDDIDGGMSLLAELGRATSLTPDAASFEPLVAACQRKEKQDVAQDLR
NAMARLGYSKDSTR* back to topmRNA from alignment at H-paniculata_contig2227:912..4729+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2227.5920.1 ID=mRNA_H-paniculata_contig2227.5920.1|Name=mRNA_H-paniculata_contig2227.5920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3818bp|location=Sequence derived from alignment at H-paniculata_contig2227:912..4729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCTATTTCAGGTTCAATTCTGTAATCAATGCGTGCGCGAAGGCCGG
TGATTGGGCCCTCACGCTCTGGCTTCTGAGCGAGATCAAAGCGGCGGGCT
TGAAGGCCGACATCCAGAGCTTCAACGCCGCCCTCGATGCCTGCACCAAG
GGCAGCAACCCGGAAGCAGCGGTGAGTTATTGCTGTACTGCAGGCATCGC
GGGTGTGAGTGCTTTTCCCTGGAGTACTTGTTCCTACCCGAGGTCTTTTA
TTTTAACAAGTCCCAGACCTGTCTCTGACGCAAAACGGTCCAGGTATACC
TCGTCGTACCGTTTGTCCTTTCGTTACATAAGTCTAATTTTTGACAGTCA
AGAATTTTTTTGAAGATTCTTGAAGATGTTCGAAATAGAATTTGTTAGGC
TGTGAAAACGTTTCTGGACGTACCGACAGATAGCTTGTTATACGTCAACT
ATTGTATTTTGTGCTGCAAAAGGGAGTGAGTGGAGGTGTGTGCGTTTGGA
GATTATAATCGGTATCGTTGTTGCATATTTTGGCGAGGGTGTTTTCCCCC
TTGTGCTCTTGCCTGTGATCACCCCAGTTGACAGTTTTGCCAAAACAAAG
TTGAAGTACCATTAATCAAGTCGGGGTGCCCGAAAAAACAGGTCATGGTC
TAGAGCTAGAGAATAGTCAGTATTCGCATTGGCTTCGTTCCCACGCCTTC
CTCGCCGAGTAGTTTGTGTTTCACCCTCACCTACCCCGGGGGTTTGCTGT
CCGCTCGCTTCGCCACTGTCAAGGGACGGCAACAAAAACGCGCCGGAGGT
CACATGTCAGTGTACAATGTTGTACACCTCTGTTGCTCATTTCCTGACGC
ACTTGTCGGATTGACGCGCTGATGGGTGCATTTGAATGATCTAATCCCGC
CGTACAGTCCTCCCTGGAATTCTTTTTGAAGTAACATCATTTTGCTTTCG
AGGTATATTCCGGAATATATGTCAGCCGGTGATCAAATGAAACGGCACGT
CTGCCGACGTAGTGCAGCAATATCTCCCCAAAACGCCTCCGTAGTTGTGC
TTATTTACCCCCGTGCCCCAGAGCACTCTGGATGAAGTTCCCCGCTATCA
CTGGTCACCGCATATCAAGGTGGCCCTCTTGGGCAGGATGCGCGCGCAGG
GCTTAGCCCCCGACGCTATCTCCTACCAATCCGCGATATCGGCCTGCCGT
AGGGGTGGAGACAGCGCGGCGGCCGTAAAGCTGATGAAAGAAATGGAAGG
GGATGGCTTCTGCCCCGGAGAGGCGGAGTACAACCTCGTCATTGAGACGG
TCGGCAGGGAGGGGGATTGGGACAGCGCAGTGGACTTGCTTAAACAGATG
AAGGAAGACGGGATAGAGCCCGACGTCTTCAGCTACGGCGCCGCGGTTGG
CGCCTGCTCCAAGGTTTGGGTCACTTGGATAGGGAGCAAGCGGGCAGGAG
GGGGGGCAAGGGAGAAGATGGGGGCGTAGCTTAAATCATGGGTGTGAGGG
TGGGGGGAAGCGATACTTACATGTTACGCTGAGGTTGCATAGCTTGCACG
CATCACTACAGATAGCATCAATGCCTCAGCTGTTGCAGAAGTGGCCACGC
TTTCTAGAACGGGTTCTATGGGGAGTAAGTGGGGGTGATGGCCAGAGTGG
GGTGTGGCGATCGGGGTTGTGTGGATAGAACAGGACCCCAGCAGGATCCC
AACCCTTGAATAGCTCTGCAGGTCCACAAGTTTCATCAATAACTGAATTG
AGAGCGTTCAGGTTAGTATTTACTCATGACTGGAAACGTTCACCATCTCG
GTAGAAACCTAAAAAGAGATATTGGCGAGATATGAACAGAAGGGAAAGTG
CGCGGATTGCCGACAGTCGCCACGTTTCGCCAATGCATCACATAGGCATG
GGAGAACTTGCTTGGTACGGGAAAAATGAAAGCACCGAGAAATGTGCGTT
TTACACATACCAAGTCTACCCCTTAGTCCTGGACCTCTCCTCCACGTCAA
AACACCTTCTTCCGTCACGCTCGCCATCTCAGGGGCGGAACCCTGCGATG
GCGCGGGCCCTGCTGCAAGAGATGCGAGAGTTGGGGCATCAACCCAATAA
GTTTTGCTGGAACGCGGTGATCAATGTACACGCAAGAACGGGCGACACGC
AAGGTGAGCTACGCTGTTTGTCCGTGTCCTACGATTTCGATGCGCTCCAG
ACCTGTGCAGCGCGTTCGATTCCGTGCGCTGACAACGGGCCCGGCGTCAA
CTCTCACCGACCTTTTCAAGCGTGACGTATGTGTGTGTGTGTGTGTTTTC
TGGTGTGTCTCCCTCTATCTGTATCTCATGGGTAGCGTGTCGGTCACTAT
CCGCGCCTCTGCCATGAACCGGAAGCCCATTCCCTTCTTGGAAGAGCACA
AACTGCGGAAGGTGGAGGATCTGGCTTCCAATTTATTTTCTATGTCGTTC
TTCGCTGTGATGCTCACCTCTTAGTTCAAAGCCAACGCCTTCTTTTCTTT
CAACATACTCTAGGATGTAGGTTTCCCACAAAGCCTGCCCTGCCCCAATC
ACTCTGATCGCGCACGTACGTCACACAGGGGCTCTTGCGCTAATGAAGGA
AATGAAACAAAACATGGAGTGCGACGAATCCACGTTCTCGAGTGTAGTTC
ACGGCTGCGCGCAGACGCGTGAGTGGGACACCGCATGCCGTCTGCTAGAG
GAGATGCGCGAGGCGGGTTTCAAACCCAACGACTCCTGCTACTATGCACT
CGTCTCGGCCGCTTGTACGGCGGGCGAGCTTGATCTAGCTCAGGAGTTTC
TGTCGAGCATGGCTGAGGATGGAGTGCCGGCGGACTCGTACGCGTACAGC
GCGCTGCTCTCGGGATGCGGCAGGGCCGGCGAATGGGAAAGGGCTCTTCG
TATTTTGAGAGAGATGAAGTCTGGGGGGGTCGAGCCGACCCTGAAAGTGT
ACACGTCGGTACTGAGGGCCTGCGCGGGGGCTGCCGAGGTAGGGCAGGCA
GCGCAGGTGGTCTGGGATTTGTTGGAAGAAATGCGGAGGCGTGGTGTGCC
GAGAGATGAGTTTGCGTGCGGCGCGGCGATGGAGGCCTTCGGGAAGGCGG
GAAGGGTTAGCGAGGCGCTCAGGTTGTTAAAAGAGATGCGATGGGATGGA
CCAGAAGCGAACTGTGAGTCTCCGCTTGGCAATTGAGAGGTTTGGGAGGG
TGGAGTGGGTTGAGTTTGGTGGGTTGGGTTTCATGTTCCGTTAATTGTGT
CTCCTGTATCATCAGTGACCAGGTAAGGTAGTTGTATGCCTCAGGTACTC
TTGCCTACAAAGGACCCTGCAGGCATCCAGACATTGAGCCGAGGAAATTT
TGTCCTGAATGATAAATTCCCGAGTTGAATGAGCTCCGAACATAACAAGG
CCGTGATCCTTGCCAGTTCTCCAACAAATCCGCATGTGCTCTGTAGTACC
CGAATGCAGCACCAGTTTCCACTTCTACGATTTAGCGAAAATGTCCAACA
GCCACCGCCTCCCTCTCCCGTCTTCCGTTTACATGCCCGCTCTTGTGGAT
TGACCTGCCGTTGTCACCCTCCCCTGTTTGGGTAACCCTCACAGTGCAAT
GCTACAACAGTGCCATCGAGGCGTGCTGCCGCGTCGACGACATAGACGGG
GGTATGTCGCTTTTGGCTGAGTTGGGACGAGCTACTAGCTTAACACCGGA
CGCTGCGAGTTTCGAACCACTCGTTGCCGCATGCCAGCGAAAGGAGAAGC
AAGATGTAGCGCAGGATTTGCGAAACGCAATGGCTAGGTTAGGATACAGT
AAGGACAGCACTAGATAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2227:912..4729+ >mRNA_H-paniculata_contig2227.5920.1 ID=mRNA_H-paniculata_contig2227.5920.1|Name=mRNA_H-paniculata_contig2227.5920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2790bp|location=Sequence derived from alignment at H-paniculata_contig2227:912..4729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCTATTTCAGGTTCAATTCTGTAATCAATGCGTGCGCGAAGGCCGG
TGATTGGGCCCTCACGCTCTGGCTTCTGAGCGAGATCAAAGCGGCGGGCT
TGAAGGCCGACATCCAGAGCTTCAACGCCGCCCTCGATGCCTGCACCAAG
GGCAGCAACCCGGAAGCAGCGCCCCCCTATTTCAGGTTCAATTCTGTAAT
CAATGCGTGCGCGAAGGCCGGTGATTGGGCCCTCACGCTCTGGCTTCTGA
GCGAGATCAAAGCGGCGGGCTTGAAGGCCGACATCCAGAGCTTCAACGCC
GCCCTCGATGCCTGCACCAAGGGCAGCAACCCGGAAGCAGCGGTGGCCCT
CTTGGGCAGGATGCGCGCGCAGGGCTTAGCCCCCGACGCTATCTCCTACC
AATCCGCGATATCGGCCTGCCGTAGGGGTGGAGACAGCGCGGCGGCCGTA
AAGCTGATGAAAGAAATGGAAGGGGATGGCTTCTGCCCCGGAGAGGCGGA
GTACAACCTCGTCATTGAGACGGTCGGCAGGGAGGGGGATTGGGACAGCG
CAGTGGACTTGCTTAAACAGATGAAGGAAGACGGGATAGAGCCCGACGTC
TTCAGCTACGGCGCCGCGGTTGGCGCCTGCTCCAAGGTGGCCCTCTTGGG
CAGGATGCGCGCGCAGGGCTTAGCCCCCGACGCTATCTCCTACCAATCCG
CGATATCGGCCTGCCGTAGGGGTGGAGACAGCGCGGCGGCCGTAAAGCTG
ATGAAAGAAATGGAAGGGGATGGCTTCTGCCCCGGAGAGGCGGAGTACAA
CCTCGTCATTGAGACGGTCGGCAGGGAGGGGGATTGGGACAGCGCAGTGG
ACTTGCTTAAACAGATGAAGGAAGACGGGATAGAGCCCGACGTCTTCAGC
TACGGCGCCGCGGTTGGCGCCTGCTCCAAGGGGCGGAACCCTGCGATGGC
GCGGGCCCTGCTGCAAGAGATGCGAGAGTTGGGGCATCAACCCAATAAGT
TTTGCTGGAACGCGGTGATCAATGTACACGCAAGAACGGGCGACACGCAA
GGGGCGGAACCCTGCGATGGCGCGGGCCCTGCTGCAAGAGATGCGAGAGT
TGGGGCATCAACCCAATAAGTTTTGCTGGAACGCGGTGATCAATGTACAC
GCAAGAACGGGCGACACGCAAGGGGCTCTTGCGCTAATGAAGGAAATGAA
ACAAAACATGGAGTGCGACGAATCCACGTTCTCGAGTGTAGTTCACGGCT
GCGCGCAGACGCGTGAGTGGGACACCGCATGCCGTCTGCTAGAGGAGATG
CGCGAGGCGGGTTTCAAACCCAACGACTCCTGCTACTATGCACTCGTCTC
GGCCGCTTGTACGGCGGGCGAGCTTGATCTAGCTCAGGAGTTTCTGTCGA
GCATGGCTGAGGATGGAGTGCCGGCGGACTCGTACGCGTACAGCGCGCTG
CTCTCGGGATGCGGCAGGGCCGGCGAATGGGAAAGGGCTCTTCGTATTTT
GAGAGAGATGAAGTCTGGGGGGGTCGAGCCGACCCTGAAAGTGTACACGT
CGGTACTGAGGGCCTGCGCGGGGGCTGCCGAGGTAGGGCAGGCAGCGCAG
GTGGTCTGGGATTTGTTGGAAGAAATGCGGAGGCGTGGTGTGCCGAGAGA
TGAGTTTGCGTGCGGCGCGGCGATGGAGGCCTTCGGGAAGGCGGGAAGGG
TTAGCGAGGCGCTCAGGTTGTTAAAAGAGATGCGATGGGATGGACCAGAA
GCGAACTGGGCTCTTGCGCTAATGAAGGAAATGAAACAAAACATGGAGTG
CGACGAATCCACGTTCTCGAGTGTAGTTCACGGCTGCGCGCAGACGCGTG
AGTGGGACACCGCATGCCGTCTGCTAGAGGAGATGCGCGAGGCGGGTTTC
AAACCCAACGACTCCTGCTACTATGCACTCGTCTCGGCCGCTTGTACGGC
GGGCGAGCTTGATCTAGCTCAGGAGTTTCTGTCGAGCATGGCTGAGGATG
GAGTGCCGGCGGACTCGTACGCGTACAGCGCGCTGCTCTCGGGATGCGGC
AGGGCCGGCGAATGGGAAAGGGCTCTTCGTATTTTGAGAGAGATGAAGTC
TGGGGGGGTCGAGCCGACCCTGAAAGTGTACACGTCGGTACTGAGGGCCT
GCGCGGGGGCTGCCGAGGTAGGGCAGGCAGCGCAGGTGGTCTGGGATTTG
TTGGAAGAAATGCGGAGGCGTGGTGTGCCGAGAGATGAGTTTGCGTGCGG
CGCGGCGATGGAGGCCTTCGGGAAGGCGGGAAGGGTTAGCGAGGCGCTCA
GGTTGTTAAAAGAGATGCGATGGGATGGACCAGAAGCGAACTTGCAATGC
TACAACAGTGCCATCGAGGCGTGCTGCCGCGTCGACGACATAGACGGGGG
TATGTCGCTTTTGGCTGAGTTGGGACGAGCTACTAGCTTAACACCGGACG
CTGCGAGTTTCGAACCACTCGTTGCCGCATGCCAGCGAAAGGAGAAGCAA
GATGTAGCGCAGGATTTGCGAAACGCAATGGCTAGGTTAGGATACAGTAA
GGACAGCACTAGATAGTGCAATGCTACAACAGTGCCATCGAGGCGTGCTG
CCGCGTCGACGACATAGACGGGGGTATGTCGCTTTTGGCTGAGTTGGGAC
GAGCTACTAGCTTAACACCGGACGCTGCGAGTTTCGAACCACTCGTTGCC
GCATGCCAGCGAAAGGAGAAGCAAGATGTAGCGCAGGATTTGCGAAACGC
AATGGCTAGGTTAGGATACAGTAAGGACAGCACTAGATAG back to top
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