mRNA_H-paniculata_contig2226.5917.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2226.5917.1
Unique NamemRNA_H-paniculata_contig2226.5917.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.040e-80
Identity = 161/432 (37.27%), Postives = 237/432 (54.86%), Query Frame = 1
Query:    1 AGKWRAAMEEEWGALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIPFVRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFSRDDRGETGLPVAVYVDDLVIA-GRREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPCREKSENFGTRV----GRHTSEPTSFWTVLSGIGEGVQESSRSRPDTAYAVHQAARGMEDPCRKDFGTCKRIFRYRSTAPDLGIAFGGKSNGHGLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIGFE 1281
            A KW+ A E E+ +L +N TWE      LP GRKAI +K +FK +   +G + RYK  L+A+GFLQ    DF ET A V + + +R     AA+    L  MD+  A+LN  +EEE+++K P  F   ++    V +L ++LYGLKQS R WN T+D+ +  IG  +  T+ C+Y  RDD+    + V +YVDDL++A    + +   K  +S+RF M DLG L   LG+EV RD  +G +++ Q  ++  VL ++G  +C+ V   +      T+     G    +        S +G  +     +RPD A AV   ++   DPC   +   KR+ RY    P  GI F G  +G  L G+ DADWA D E ++ST+GY+F LNGG     S+KQR V  SSTE EY+A  +A +E  + +  +R +G E
Sbjct:    6 ASKWKEACESEFESLCKNKTWELVP---LPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVD-AKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAM--IFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAEYMALSEATQEAVWLKAFMRELGEE 430          
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 261 bits (667), Expect = 7.650e-73
Identity = 166/440 (37.73%), Postives = 236/440 (53.64%), Query Frame = 1
Query:    1 AGKWRAAMEEEWGALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIPF-VRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFSRDDRGETGLPVAVYVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPCREKSENFGTRVGRHTSEPTSFWTVLSGIGEGVQESSRSRPDTAYAVHQAARGMEDPCRKDFGTCKRIFRYRSTAPDLGIAFGGKSNGHGLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIGFECRVSMALFEDN 1314
            A  W+ +M  E+ AL+ N TW   D   LPAG K I +K +F+ +   +G + R+K  L+A+G  Q    +++ET + V R   +R  F  AAE    +  +DI  AYLN+ ++EE++++ P  F   S + P  V +L K++YGLKQS R WNNTLD+ L  +G  RS+  +CLY  +  +G + +  AVYVDDL+I    E ++   K  IS +F M D GSLS  LG+E++RD   G +++ Q +YIR +LK YG   CR V        F       +    +     S IG  +  +  SRPD  +AV + ++   +P  +     K I RY S   +L I +  +  G  + GF DADWA D  D+KS +GY F L G A    S KQ +V  SSTE EYVA   A KE  Y R LL  IG+     M +  DN
Sbjct:  830 AQNWQESMRSEYNALLSNDTWSLVD---LPAGAKTIGSKWVFRIKRDKNGEIERFKSRLVAKGCGQQFGVNYWETFSPVIRYETIRMLFAIAAEKQLFMHQIDISNAYLNSSLDEEVYMRQPQNF--ISTEHPNKVLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSSYI--AVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAV-ATPLDPGFLVCCKDDSCVKVNVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY--RKTGEPVVGFADADWANDQLDRKSYSGYTFFLAGSAFSWSSAKQSIVALSSTEAEYVALTAAAKEAVYLRRLLAEIGWSAGEPMVINGDN 1259          
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: A0A5S6QN85_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QN85_TRIMR)

HSP 1 Score: 256 bits (654), Expect = 1.290e-72
Identity = 159/438 (36.30%), Postives = 245/438 (55.94%), Query Frame = 1
Query:    7 KWRAAMEEEWGALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIPFVRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFSRDDRGETGLPVAVYVDDLVIAGRREKVD-EFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPCREKSENFGTRVGRHTSEPTSFWTVLSGIGEGVQESSRSRPDTAYAVHQAARGMEDPCRKDFGTCKRIFRYRSTAPDLGIAFGGKSNGH-GLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIGFECRVSMALFEDN 1314
            KW  A+  E  +L ++  WE  D   LP G++ I  K +FK +    G++  YK  L+A+GF Q++  D+ ET A V R   +R  F  AA  +  +  +D+  AYLN  ++EELF++ PP FS  + D   V RL +SLYGLKQS+R WN    DAL  +G   +R + CL FSR+++  T   V +YVDDL+IAG   ++  +    ++  F +KDLG + + LG++V R+  +G+  + Q + +R +LK +G  + + V    ++ NF +     + +          IG  +  ++ +RPD ++AV Q  R ME P ++D+   KR+ RY + +P   + F   +NG   L GF+DADWA D  D+KST+GY FK+        SRKQ  V  SSTE EYVAA +A ++  + R +L  IG +      ++EDN
Sbjct:  371 KWMEAVNAELMSLEKHKVWEIAD---LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDETFAPVVRHETVRILFAVAAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTDGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRNEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREE-DGSFLLYQAAKVRHLLKEHGLLDAKPVATPMEA-NFLSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRF--SANGSIKLSGFVDADWAGDHADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYVAASEACRDLLWIRQVLEDIGIKQVEPTIVYEDN 799          
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 260 bits (664), Expect = 2.550e-72
Identity = 160/437 (36.61%), Postives = 238/437 (54.46%), Query Frame = 1
Query:    1 AGKWRAAMEEEWGALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIPFVRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFSRDDRGETG--LPVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPCREKSENFGTRVGRHTSEPTSFWTVLSGIGEGVQESSRSRPDTAYAVHQAARGMEDPCRKDFGTCKRIFRYRSTAPDLGIAF---GGKSNGHGLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIGFECRVS 1293
            A  W+AA  EE  A  +    E  D    P GRK +  K +FK +   DGS+ +YK  L+A+GF QVE  D+ +T A V + + +RT    AA  D +++ MD+ +A+LN  ++EE+++  PP F     D   V RL KSLYGLKQ+SR W   +      +G +RS  +  ++     + E G  L +A+YVDD++IAG  R  +D FK  +S+RF M DLGS   +LG+E+ RDR   T++ISQ  YI ++L+R+G   CR V    +      ++   T +P  + + L  +   +     SRPD A+AV   ++    P  + +    R+FRY   + DL +++      SNG    G+ DADWA D  D++ST+G  F L+GGA    S+KQ+ +  SSTE EYVA   A KE  + R LL  +     +S
Sbjct: 1001 ADMWKAACAEELFAFAKA---ELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFD---HDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFV----KVENGVILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATIDPKPYQSALGSL---MYAMLGSRPDLAFAVGALSKHSATPGPQHWKALMRVFRYLRGSSDLCLSYKPDSEHSNGATPLGYCDADWAGDVNDRRSTSGQAFFLHGGAVSWQSKKQQSIAQSSTEAEYVALASAAKEALWLRALLDDLAIPASIS 1424          
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 248 bits (632), Expect = 3.450e-72
Identity = 155/449 (34.52%), Postives = 240/449 (53.45%), Query Frame = 1
Query:    1 AGKWRAAMEEEWGALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIP-FVRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFS--RDDRGETGLPV-AVYVDDLV-IAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPCREKSENFGTRVGRHTSEPTSFWTVL--SGIGEGVQESSRSRPDTAYAVHQAARGMEDPCRKDFGTCKRIFRYRSTAPDLGIAF----GGKSNGHGLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIGFECRVSMALFEDN 1314
            A KW+ A++EE+ +L+ N TWE   P   P G   I +K + K +   DG+V R+K  L+AQG+ Q    ++ E  + V R S +RT    A +++ E+  MD+  A+LN  +E ++++  P  F    ++ P +V +L KSLYGLKQS+R WN TLD  L   G  +S  ++C+Y    ++D G     + AVYVDD++ I+     ++  K  + + F M D G +  +LG+ ++RDR   T+ ISQ  Y+  VL R+G   C+ +     S    T   + T E   F   L    IG     S+ +RPD + AV   +  M +P ++ +   KR+ RY     + G+ F        NG  L G+ DA+WA D + ++ST+GY+FK+       CS+KQ  VT S+TE EYVA  +A +E  + R LL  IG +      ++EDN
Sbjct:   26 ASKWKQALKEEYNSLISNETWELVPP---PEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGF--VDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLESVLDRFGMANCKPI-----STPLETTYHKRTEEEEGFDKNLYQQAIGRLTYISTATRPDISAAVSILSSYMSNPSKEHWNGVKRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDN 464          
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: A0A0J7K6W1_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K6W1_LASNI)

HSP 1 Score: 259 bits (661), Expect = 4.790e-72
Identity = 161/438 (36.76%), Postives = 240/438 (54.79%), Query Frame = 1
Query:   10 WRAAMEEEWGALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIPFVRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFSRDDRGETGLPVAVYVDDLVIAGRREKVDE-FKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPCREKSENFGTRVGRHTSEPTSFWTVLSGIGEGVQESSRSRPDTAYAVHQAARGMEDPCRKDFGTCKRIFRYRSTAPD--LGIAFGGKSNGHGLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIGFECRVSMALFEDN 1314
            W  A EEE  +L E+ TWE  D   LP G+KAI  K +FK +L  +G V  YK  L+A+GF Q   ED+ ET A V +   +R     AA     +  +D+ +AYLN  +EEE+F++ PP F     +   +R L KSLYGLKQS+R WN   ++AL  +G      + CLY +R ++G     V +YVDDL++AG   +V +    ++ + F +KDLG+++  LGI++ R+  +G+  +SQ   I ++L+ YG  E + +    ++    +        P +       IG  +  ++ SRPD A AV    R +E+P  +D+   KR+ RY ++  D  L ++  GK+    LE F+DADWA D  D+KST+GY+F+L  G     SRKQ  V  SSTE EY+AA  A KE  + R LL+ +         + EDN
Sbjct:  823 WITAAEEEIKSLNEHQTWELTD---LPPGKKAITCKWVFKAKLDSEGQVHTYKARLVARGFSQRYGEDYDETFAPVVKHETIRILLLVAAHKGLHVRHLDVKSAYLNGKLEEEIFLEQPPGFQKRGHESKVLRLL-KSLYGLKQSARAWNKRANEALAQLGFQSKNADQCLY-TRKEKGNNTTYVLLYVDDLLVAGTSAEVTQKVSKDLQRHFNIKDLGNVNHYLGIQIERE-ADGSFLLSQKGKISKMLEEYGLLEPKPMATPMETGFLSSEADDSIKLPNNS-QYRKAIGSLLYIATVSRPDIALAVGILCRCVENPTERDWKAVKRVMRYLASTIDKKLQLSSFGKTE---LECFVDADWAGDKTDRKSTSGYVFRLGNGTVAWSSRKQTTVAMSSTEAEYIAASYASKELLWLRQLLKDMNIPAEGPTIINEDN 1250          
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: Q6BCY1_IPOBA (Gag-Pol n=1 Tax=Ipomoea batatas TaxID=4120 RepID=Q6BCY1_IPOBA)

HSP 1 Score: 257 bits (657), Expect = 1.560e-71
Identity = 152/428 (35.51%), Postives = 237/428 (55.37%), Query Frame = 1
Query:    7 KWRAAMEEEWGALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIPFVRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFSRDDRGETGLPVAVYVDDLVIAG-RREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGV----PCREKSENFGTRVGRHTSEPTSFWTVLSGIGEGVQESSRSRPDTAYAVHQAARGMEDPCRKDFGTCKRIFRYRSTAPDLGIAFGGKSNGHGLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIG 1275
            +W AAM+EE  AL +N TW   D   LP GRK I  K +FK +  GD  V RY+  L+ +G+ Q E  DF E  + V R++ +R      A  +  LE +D+  A+L+  +EEE+++ L PE      +   V RL KSLYGLKQ+ R W    D  +  +G +R   + C YF R  + +  + + +YVDD+++AG  ++ +DE K  +++ F MKDLG  +++LG+++ RDR N  I +SQ +Y++++L R+   +C+ +    P   K  +  +          S     S +G  +     +RPD A AV   +R M +P R+ +   KRI RY     D+ + +GG      + G++D+D+A D +  KSTTGY+FK+ GGA    S+ Q +V  S+TE EYVAA +A KE  + + LL  +G
Sbjct:  795 QWTAAMQEEIEALHKNNTW---DLVPLPQGRKPIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGDLEEEIYM-LQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFGK-DNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYGGSD--FIINGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLLEELG 1215          
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 244 bits (624), Expect = 1.610e-71
Identity = 152/427 (35.60%), Postives = 236/427 (55.27%), Query Frame = 1
Query:   40 ALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIPFVRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFSRDDRGETGLPVAVYVDDLVIAGRREKVD-EFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPCREKSENFGTRVGRHTSEPTSFWTVLSGIGEGVQESSRSRPDTAYAVHQAARGMEDPCRKDFGTCKRIFRYRSTAPDLGIAFGGKSNGH-GLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIGFECRVSMALFEDN 1314
            +L  +  WE  D   LP G++ I  K +FK +    G++  YK  L+A+GF Q++  D+ +T A V R   +R  F   A  +  +  +D+  AYLN  ++EELF++ PP FS  +     V RL +SLYGLKQS+R WN    DAL  +G   +R + CL FSR ++  T   V +YVDDL+IAG   ++  +    ++  F +KDLG + + LG++V R+  +G+  + Q + +R +LK +G  + + V    ++ NF +     + +          IG  +  ++ +RPD ++AV Q  R ME P ++D+   KR+ RY + +P   + F   +NG   L GF+DADWA D  D+KST+GY FK+        SRKQ  V  SSTE EY+AA +A ++  + R +L  IG E      ++EDN
Sbjct:    2 SLERHKVWEIAD---LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDKTFAPVVRHETVRILFAVVAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTGGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRSEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREE-DGSFLLYQAAKVRHLLKEHGLLDAKPVATPMEA-NFLSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRF--SANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDN 419          
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: A0A6S7HIB2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIB2_PARCT)

HSP 1 Score: 256 bits (653), Expect = 2.210e-71
Identity = 160/446 (35.87%), Postives = 243/446 (54.48%), Query Frame = 1
Query:    7 KWRAAMEEEWGALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIPFVRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFSRDDRGETGLPVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPCREKSENFGTRVGRHTSEP---TSFWTVLSGIGEGVQESSRSRPDTAYAVHQAARGM-----EDPCRKDFGTCKRIFRYRSTAPDLGIAF-GGKSNGHGLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIGFECRVSMALFEDN 1314
            KW+ A++ E+ A ++N TW     G LP GRKAI  + +FK +   DGSV R+K  L+A+G+ Q    D+ ET + V + + +R+    A + D E+  MD+  A+LN  +EEE+++K P  +     +   V +L KS+YGLKQSSR W NT+D  L   G  +S ++ CLY  R+  G+  + +A+YVDDL+ A   +++  + K  + +RF MKDLG +   LGI+V RDR    + + Q  Y+  + K++G +EC+  P     +  GT++  +  EP   T +  ++ G+   V   + +RPD A A+     G+      +P  + +   KRI RY     D GI F G K       G++DADW  +   +KS +GY+F L GG     S+KQ +V  SSTE EYVAA  A +E  + R LL  I F       + EDN
Sbjct:  605 KWKQALDNEYSAHIKNNTWTL---GNLPEGRKAIDCRWVFKVKYNADGSVERHKARLVAKGYSQEPGLDYDETFSPVAKYTSIRSLLAIANQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGYVKEGEE-DLVCKLNKSIYGLKQSSRCWYNTIDQFLKNSGYVQSSSDPCLYIKRE--GDDIMLIALYVDDLIPASNSKRMLHKEKEALRKRFEMKDLGEVHYCLGIQVERDRNKKRMRLHQSQYLTNLSKKFGMEECK--PAATPVDQ-GTKLLPNEGEPVEKTKYQALIGGLTYAV---TGTRPDLAQALGLVTLGLVNQFCSNPGVEHWTAAKRILRYIKGTIDYGITFDGNKETEVQWNGYVDADWGSNPNGRKSQSGYLFTLCGGVISWASKKQSVVALSSTEAEYVAASLACQEAVWLRVLLEDISFVQNKPTMIKEDN 1038          
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 244 bits (622), Expect = 5.370e-71
Identity = 154/439 (35.08%), Postives = 240/439 (54.67%), Query Frame = 1
Query:    1 AGKWRAAMEEEWGALVENGTWESEDPGRLPAGRKAIRTK*IFKQRLKGDGSVARYKVPLMAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYLNAPVEEELFIKLPPEFSPFSRDIPFVRRLGKSLYGLKQSSRNWNNTLDDALGGIGLDRSRTNSCLYFSRDDRGETGLPVAVYVDDLV-IAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPCREKSENFGTRVGRHTSEPTSFWTVLSGIGEGVQESSRSRPDTAYAVHQAARGMEDPCRKDFGTCKRIFRYRSTAPDLGIAFGGKSNGHGLEGFIDADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGKAGKETAYPRGLLRSIGFECRVSMALFEDN 1314
            A +W+ A + E+ +L+EN TW+  +   LP  RK I ++ +FK +   DG V RYK  L+A+G+ Q    D+ ET + V R S +RT    A +N+  +  MD+  A+LN  +EEE++++ P  +    ++   V +L KS+YGLKQS R W+ T  +++  IG ++S ++ C++       E    +AVYVDDL+ I    E + E K  + ++++MKD+G LS +LGI V +D+ N ++ + Q  YI  VL++YG D+   V     + N   +     S P +  T  S +G  +  +  +RPD A AV   ++    P        KRI RY     +L + +  +S    L GF DADWA D +D++STTG IF L GGA    S+KQ  V  S+ E EYVA  +A +E  +   LL  +G +   ++ L EDN
Sbjct:   10 AKEWKEAADLEYESLLENETWDLVE---LPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQPDGYIKPGQE-HLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRARQELEI---LAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADA-NVKLQKDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQ-RSESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDATPTVIL-EDN 438          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2226.5917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YB57_9STRA1.040e-8037.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
W8BWJ0_CERCA7.650e-7337.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A5S6QN85_TRIMR1.290e-7236.30Integrase catalytic domain-containing protein n=2 ... [more]
A0A1M2VV58_TRAPU2.550e-7236.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9JFU5_PARCT3.450e-7234.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7K6W1_LASNI4.790e-7236.76Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
Q6BCY1_IPOBA1.560e-7135.51Gag-Pol n=1 Tax=Ipomoea batatas TaxID=4120 RepID=Q... [more]
A0A5S6QJX2_TRIMR1.610e-7135.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HIB2_PARCT2.210e-7135.87Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6G0HFF8_LARCR5.370e-7135.08Copia protein Gag-int-pol protein Copia VLP protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2226contigH-paniculata_contig2226:5..1584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue8.3e-54
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1514
Cds size1248
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2226.5917.1prot_H-paniculata_contig2226.5917.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2226 182..1495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929616.1909575-UTR-H-paniculata_contig2226:4..1811622929616.1909575-UTR-H-paniculata_contig2226:4..181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2226 5..181 +
1691480936.8269048-UTR-H-paniculata_contig2226:4..1811691480936.8269048-UTR-H-paniculata_contig2226:4..181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2226 5..181 +
1622929616.253507-UTR-H-paniculata_contig2226:1495..15841622929616.253507-UTR-H-paniculata_contig2226:1495..1584Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2226 1496..1584 +
1691480936.852846-UTR-H-paniculata_contig2226:1495..15841691480936.852846-UTR-H-paniculata_contig2226:1495..1584Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2226 1496..1584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929616.2064674-CDS-H-paniculata_contig2226:181..9081622929616.2064674-CDS-H-paniculata_contig2226:181..908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2226 182..908 +
1691480936.836543-CDS-H-paniculata_contig2226:181..9081691480936.836543-CDS-H-paniculata_contig2226:181..908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2226 182..908 +
1622929616.2324882-CDS-H-paniculata_contig2226:974..14951622929616.2324882-CDS-H-paniculata_contig2226:974..1495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2226 975..1495 +
1691480936.8447592-CDS-H-paniculata_contig2226:974..14951691480936.8447592-CDS-H-paniculata_contig2226:974..1495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2226 975..1495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2226.5917.1

>prot_H-paniculata_contig2226.5917.1 ID=prot_H-paniculata_contig2226.5917.1|Name=mRNA_H-paniculata_contig2226.5917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=416bp
MAQGFLQVEVEDFFETSALVPRMSKLRTAFRPAAENDFELEGMDIDAAYL
NAPVEEELFIKLPPEFSPFSRDIPFVRRLGKSLYGLKQSSRNWNNTLDDA
LGGIGLDRSRTNSCLYFSRDDRGETGLPVAVYVDDLVIAGRREKVDEFKH
NISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDE
CRGVPCREKSENFGTRVGRHTSEPTSFWTVLSGIGEGVQESSRSRPDTAY
AVHQAARGMEDPCRKDFGTCKRIFRYRSTAPDLGIAFGGKSNGHGLEGFI
DADWAEDFEDQKSTTGYIFKLNGGAKRGCSRKQRLVTWSSTEEEYVAAGK
AGKETAYPRGLLRSIGFECRVSMALFEDNNQLSTPVRGLVHTAGQSTSAC
AGTEFETGFGKEYWR*
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mRNA from alignment at H-paniculata_contig2226:5..1584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2226.5917.1 ID=mRNA_H-paniculata_contig2226.5917.1|Name=mRNA_H-paniculata_contig2226.5917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-paniculata_contig2226:5..1584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGGAAATGGCGCGCGGCAATGGAGGAAGAATGGGGGGCGTTGGTGGA AAATGGAACATGGGAAAGCGAAGACCCGGGGAGGTTACCGGCAGGGCGAA AGGCGATCCGCACGAAATAGATTTTCAAGCAGAGGCTGAAGGGCGACGGC AGCGTCGCACGCTACAAAGTGCCACTGATGGCTCAAGGCTTTTTACAGGT GGAGGTCGAAGATTTCTTTGAAACCAGTGCCCTTGTACCTCGCATGTCGA AGTTACGTACTGCGTTTAGGCCGGCCGCCGAAAATGATTTCGAATTAGAA GGCATGGACATAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCT GTTTATTAAGCTACCACCCGAGTTTTCCCCTTTCTCCCGAGACATACCAT TTGTCCGCCGCCTGGGTAAAAGCCTGTACGGCCTCAAGCAGAGCAGCCGT AACTGGAATAACACTCTTGACGATGCTCTTGGTGGGATAGGACTCGACCG TTCCAGGACCAACTCATGCTTGTACTTCTCTCGCGACGATAGGGGAGAGA CAGGCCTTCCGGTGGCCGTATATGTTGACGACCTGGTTATTGCCGGCCGT CGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTAGGAT GAAAGACTTGGGCTCCCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTG ACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGAG GTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGGGTACCCTGTAGAGA GAAAAGTGAAAATTTCGGCACCCGAGTCGGCCGACACACCTCCGAACCGA CGTCATTTTGGACTGTACTGTCGGGCATAGGCGAAGGAGTACAAGAAAGC AGCAGTGGGAGAAGTGGCAATTCAACTGAATACAGAGGCAGAGTAGGATC ACTCATGTAAGCCTCGACAGGAAGTAGACCTGATACAGCATACGCGGTAC ACCAAGCAGCACGTGGTATGGAGGACCCATGTCGGAAAGACTTCGGTACA TGCAAGCGCATTTTTCGTTATCGCAGTACTGCGCCTGACCTCGGCATTGC GTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCATTGATGCCG ATTGGGCGGAAGATTTCGAGGACCAAAAATCCACAACAGGATACATATTT AAATTAAACGGCGGGGCGAAACGCGGGTGCTCTAGGAAGCAACGGTTAGT CACGTGGTCCAGTACAGAGGAAGAGTACGTTGCTGCAGGAAAAGCCGGAA AGGAGACGGCATATCCTAGGGGTTTACTCAGATCGATAGGTTTCGAATGT AGGGTGAGCATGGCCTTGTTTGAGGACAATAATCAGCTATCAACCCCAGT AAGGGGTCTGGTGCACACTGCAGGACAAAGCACATCGGCGTGCGCTGGCA CGGAATTCGAGACTGGATTCGGGAAGGAGTATTGGCGTTGAAATACGTGC AAGCTGACGACCAACTTGCTGACATTTTAACAAAAGGACTAAGCAGAGTA AAGTTTCAGAGGCTGAGAAATTTACTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2226:5..1584+

>mRNA_H-paniculata_contig2226.5917.1 ID=mRNA_H-paniculata_contig2226.5917.1|Name=mRNA_H-paniculata_contig2226.5917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2496bp|location=Sequence derived from alignment at H-paniculata_contig2226:5..1584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCAAGGCTTTTTACAGGTGGAGGTCGAAGATTTCTTTGAAACCAG
TGCCCTTGTACCTCGCATGTCGAAGTTACGTACTGCGTTTAGGCCGGCCG
CCGAAAATGATTTCGAATTAGAAGGCATGGACATAGATGCGGCGTATTTG
AACGCCCCGGTAGAAGAAGAGCTGTTTATTAAGCTACCACCCGAGTTTTC
CCCTTTCTCCCGAGACATACCATTTGTCCGCCGCCTGGGTAAAAGCCTGT
ACGGCCTCAAGCAGAGCAGCCGTAACTGGAATAACACTCTTGACGATGCT
CTTGGTGGGATAGGACTCGACCGTTCCAGGACCAACTCATGCTTGTACTT
CTCTCGCGACGATAGGGGAGAGACAGGCCTTCCGGTGGCCGTATATGTTG
ACGACCTGGTTATTGCCGGCCGTCGTGAGAAAGTAGACGAGTTCAAGCAT
AACATAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCCCTCTCGCGCGT
GTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACCATAACCATCT
CGCAGGGTAGCTACATCCGCGAGGTACTAAAAAGATACGGTTTTGACGAG
TGTCGAGGGGTACCCTGTAGAGAGAAAAGTGAAAATTTCGGCACCCGAGT
CGGCCGACACACCTCCGAACCGACGTCATTTTGGACTGTACTGTCGGGCA
TAGGCGAAGGAGTACAAGAAAGCAGCAATGGCTCAAGGCTTTTTACAGGT
GGAGGTCGAAGATTTCTTTGAAACCAGTGCCCTTGTACCTCGCATGTCGA
AGTTACGTACTGCGTTTAGGCCGGCCGCCGAAAATGATTTCGAATTAGAA
GGCATGGACATAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCT
GTTTATTAAGCTACCACCCGAGTTTTCCCCTTTCTCCCGAGACATACCAT
TTGTCCGCCGCCTGGGTAAAAGCCTGTACGGCCTCAAGCAGAGCAGCCGT
AACTGGAATAACACTCTTGACGATGCTCTTGGTGGGATAGGACTCGACCG
TTCCAGGACCAACTCATGCTTGTACTTCTCTCGCGACGATAGGGGAGAGA
CAGGCCTTCCGGTGGCCGTATATGTTGACGACCTGGTTATTGCCGGCCGT
CGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTAGGAT
GAAAGACTTGGGCTCCCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTG
ACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGAG
GTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGGGTACCCTGTAGAGA
GAAAAGTGAAAATTTCGGCACCCGAGTCGGCCGACACACCTCCGAACCGA
CGTCATTTTGGACTGTACTGTCGGGCATAGGCGAAGGAGTACAAGAAAGC
AGCAGAAGTAGACCTGATACAGCATACGCGGTACACCAAGCAGCACGTGG
TATGGAGGACCCATGTCGGAAAGACTTCGGTACATGCAAGCGCATTTTTC
GTTATCGCAGTACTGCGCCTGACCTCGGCATTGCGTTCGGCGGTAAGAGT
AATGGTCACGGTCTGGAAGGATTCATTGATGCCGATTGGGCGGAAGATTT
CGAGGACCAAAAATCCACAACAGGATACATATTTAAATTAAACGGCGGGG
CGAAACGCGGGTGCTCTAGGAAGCAACGGTTAGTCACGTGGTCCAGTACA
GAGGAAGAGTACGTTGCTGCAGGAAAAGCCGGAAAGGAGACGGCATATCC
TAGGGGTTTACTCAGATCGATAGGTTTCGAATGTAGGGTGAGCATGGCCT
TGTTTGAGGACAATAATCAGCTATCAACCCCAGTAAGGGGTCTGGTGCAC
ACTGCAGGACAAAGCACATCGGCGTGCGCTGGCACGGAATTCGAGACTGG
ATTCGGGAAGGAGTATTGGCGTTGAGAAGTAGACCTGATACAGCATACGC
GGTACACCAAGCAGCACGTGGTATGGAGGACCCATGTCGGAAAGACTTCG
GTACATGCAAGCGCATTTTTCGTTATCGCAGTACTGCGCCTGACCTCGGC
ATTGCGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCATTGA
TGCCGATTGGGCGGAAGATTTCGAGGACCAAAAATCCACAACAGGATACA
TATTTAAATTAAACGGCGGGGCGAAACGCGGGTGCTCTAGGAAGCAACGG
TTAGTCACGTGGTCCAGTACAGAGGAAGAGTACGTTGCTGCAGGAAAAGC
CGGAAAGGAGACGGCATATCCTAGGGGTTTACTCAGATCGATAGGTTTCG
AATGTAGGGTGAGCATGGCCTTGTTTGAGGACAATAATCAGCTATCAACC
CCAGTAAGGGGTCTGGTGCACACTGCAGGACAAAGCACATCGGCGTGCGC
TGGCACGGAATTCGAGACTGGATTCGGGAAGGAGTATTGGCGTTGA
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