mRNA_H-paniculata_contig22255.5915.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22255.5915.1
Unique NamemRNA_H-paniculata_contig22255.5915.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: D8LDQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ3_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 9.500e-45
Identity = 76/130 (58.46%), Postives = 88/130 (67.69%), Query Frame = 1
Query:   13 LQVIGTHNSYHRRTTVPAAERFWMYRYPSLTEQLDRGIRNLELDIHYDWKTGRLVWQYRCFSSPGHVARVDTRFHVQLLRTWFVYHLSVLDAMTTCNCFSVCLEEIKQWSDMHPAHHILFVTIELKVYGD 402
            LQVIGTHNSYHRRT VPA   +W Y YPSLT QLD GIR+LELDIHYDWKTGR                            WFV+HLS+LDA+++CNC SVCL E+++WSD HP HHILF+ IELK+ GD
Sbjct:  209 LQVIGTHNSYHRRTYVPALSDYWDYHYPSLTAQLDAGIRHLELDIHYDWKTGR----------------------------WFVFHLSILDAVSSCNCLSVCLAEVREWSDTHPTHHILFIEIELKLTGD 310          
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: A0A6H5L092_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L092_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 6.740e-44
Identity = 75/130 (57.69%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   13 LQVIGTHNSYHRRTTVPAAERFWMYRYPSLTEQLDRGIRNLELDIHYDWKTGRLVWQYRCFSSPGHVARVDTRFHVQLLRTWFVYHLSVLDAMTTCNCFSVCLEEIKQWSDMHPAHHILFVTIELKVYGD 402
            LQVIGTHNSYHRRT VPA   +W Y+YPSLT QLD GIR+LELD HYDWKTGR                            WFV+HLS+LDA+++CNC SVCL EI++WSD HP HHILF+ IE K+ GD
Sbjct:  208 LQVIGTHNSYHRRTFVPALSDYWDYQYPSLTAQLDAGIRHLELDTHYDWKTGR----------------------------WFVFHLSILDAVSSCNCLSVCLAEIREWSDTHPTHHILFIEIEFKLTGD 309          
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: A0A6H5KYL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYL9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.580e-20
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   13 LQVIGTHNSYHRRTTVPAAERFWMYRYPSLTEQLDRGIRNLELDIHYDWKTGR 171
            L+V GTHNSYHRRT +P   +FW Y +PS+  QLD G+R+LELD+HYDWKTGR
Sbjct:   85 LKVYGTHNSYHRRTNIPGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGR 137          
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: A0A149S9D6_GLUJA (Uncharacterized protein (Fragment) n=2 Tax=Gluconobacter japonicus TaxID=376620 RepID=A0A149S9D6_GLUJA)

HSP 1 Score: 86.7 bits (213), Expect = 2.970e-18
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 1
Query:   13 LQVIGTHNSYHR------RT----TVPAAERFWMYRYPSLTEQLDRGIRNLELDIHYDWKTGRLVWQYRCFSSPGHVARVDTRFHVQLLRTWF-VYHLSVLDAMTTCNCFSVCLEEIKQWSDMHPAHHILFVTIELKVYGD 402
            LQVIG+HNSYH       RT    + P   R   Y++PSL+ QLD G+R LELDI+ D K GR    +R    PG V  + +     + +  F V H+  +D   TC     CL +I+ WS  HP H  +FV +E++ + D
Sbjct:   26 LQVIGSHNSYHAGLDSTIRTQLLASAPDLVRQLDYQHPSLSAQLDGGVRQLELDIYADTKGGRFAHPHRP-GVPGDVWSLSSSDQAIMNQPGFKVMHIPDIDQHATCQPLQQCLSQIRDWSVAHPHHVPVFVILEVEQHND 165          
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: UPI001663383E (Ca2+-dependent phosphoinositide-specific phospholipase C n=1 Tax=Asaia siamensis TaxID=110479 RepID=UPI001663383E)

HSP 1 Score: 87.4 bits (215), Expect = 1.950e-17
Identity = 54/147 (36.73%), Postives = 70/147 (47.62%), Query Frame = 1
Query:   13 LQVIGTHNSYHRRTT----------VPAAERFWMYRYPSLTEQLDRGIRNLELDIHYDWKTGRLVWQYRCFSSPGHVARVDTRFHVQLLRTWF-------VYHLSVLDAMTTCNCFSVCLEEIKQWSDMHPAHHILFVTIELKVYGD 402
            +QVIG+HNSYH               P       YR+ SLT QLD GIR +ELD++ D + GR    +R    PGH    D R+ + L            V H+  LD   TC  F+ CL EI  WS  HP H  +FV +E + + D
Sbjct:   56 IQVIGSHNSYHAGIAPARLALIAEDAPQLASLLDYRHASLTNQLDHGIRQIELDLYADTQGGRFATPHR----PGHA---DERWPLSLREEAVMRQPGIKVMHIPDLDQHATCQPFTACLAEISHWSRAHPGHVPIFVILETEQHND 195          
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: A0A7D8FGH8_9BACT (Uncharacterized protein n=1 Tax=Granulicella sp. 5B5 TaxID=1617967 RepID=A0A7D8FGH8_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 3.240e-17
Identity = 56/144 (38.89%), Postives = 72/144 (50.00%), Query Frame = 1
Query:   13 LQVIGTHNSYHRRTTVPAAERFWM-----------YRYPSLTEQLDRGIRNLELDIHYDWKTGRLVWQYRCFSSPGHVAR----VDTRFH---VQLLRTWFVYHLSVLDAMTTCNCFSVCLEEIKQWSDMHPAHHILFVTIELK 390
            +QVIGTHNSYH     P+  + W            Y +PSLT+QLD G+R +ELDI  D K GR    Y   + P  VA     VD  F    V L   + V H+  +D  + C  F  CL EI+ WS  HP H  +F+ +E K
Sbjct:   12 IQVIGTHNSYHAGIA-PSESKIWKEKHPKEYEGLDYSHPSLTKQLDSGVRQVELDIFADTKGGR----YAQPAGPEMVAAAGLPVDAPFDPDGVMLKPGFKVMHVQDVDYRSNCQPFIACLSEIRVWSRAHPRHVPIFILVETK 150          
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: UPI0004E1A321 (phosphatidylinositol-specific phospholipase C1-like protein n=1 Tax=Bryobacter aggregatus TaxID=360054 RepID=UPI0004E1A321)

HSP 1 Score: 84.3 bits (207), Expect = 1.340e-16
Identity = 52/145 (35.86%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   13 LQVIGTHNSYHR----------RTTVPAAERFWMYRYPSLTEQLDRGIRNLELDIHYDWKTGRLVWQYRCFSSPGHVARV-------DTRFHVQ-LLRTWF-VYHLSVLDAMTTCNCFSVCLEEIKQWSDMHPAHHILFVTIELK 390
            +Q+IG+HNSYH           R   P A     YR+PSLT+QL+ G+R LELD++ D        Q   F++P  +AR+       D  F  + L++  F V H+  +D  + C  F  CLEE++ WS  HP H  +++ IE K
Sbjct:   41 IQIIGSHNSYHSGIEPSQMALIRKANPQAAAALDYRHPSLTQQLNSGVRQLELDVYADP-------QGAAFAAPAGLARIAKAGLPADPPFDAEPLMKPGFKVLHVKDVDYRSNCQPFIACLEEVRAWSKKHPRHLPIYILIENK 178          
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: UPI001787A955 (phosphatidylinositol-specific phospholipase C1-like protein n=1 Tax=Dyella acidiphila TaxID=2775866 RepID=UPI001787A955)

HSP 1 Score: 84.3 bits (207), Expect = 1.500e-16
Identity = 53/140 (37.86%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   13 LQVIGTHNSYHR----------RTTVPAAERFWMYRYPSLTEQLDRGIRNLELDIHYDWKTGR-----LVWQYRCFSSPGHVARVDTRFHVQLLRTWF-VYHLSVLDAMTTCNCFSVCLEEIKQWSDMHPAHHILFVTIE 384
            LQ IG+HNSYH           + T PA      Y +PSL+ QLD G+R LELD++ D K GR     +V Q R    P      D      + R  F V H+  +D  + C  F+ CL EI+ WS+ HP H  LF+ +E
Sbjct:   53 LQYIGSHNSYHAGLAPGEATVWKRTDPATFAMIDYAHPSLSRQLDDGVRQLELDVYGDAKGGRYAHPAIVGQVRAAGLPPDPPFADPAV---MQRPGFKVMHIQDIDQRSNCQPFTACLAEIRTWSNAHPRHLPLFILVE 189          
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: UPI00131D2B91 (phosphatidylinositol-specific phospholipase C1-like protein n=1 Tax=Granulicella sp. L60 TaxID=1641866 RepID=UPI00131D2B91)

HSP 1 Score: 83.6 bits (205), Expect = 2.460e-16
Identity = 53/144 (36.81%), Postives = 73/144 (50.69%), Query Frame = 1
Query:   13 LQVIGTHNSYHRRTTVPAAERFWM-----------YRYPSLTEQLDRGIRNLELDIHYDWKTGRLVWQYRCFSSPGHVARV----DTRFHVQLLRT---WFVYHLSVLDAMTTCNCFSVCLEEIKQWSDMHPAHHILFVTIELK 390
            +QVIGTHNSYH     P+  + W            Y++  L +QLD G+R +ELD++ D K GR    Y   S P +VA      D  F    L     + V H+  +D  +TC  F  CL++IKQWS  HP H  +F+ +E K
Sbjct:   30 IQVIGTHNSYHAGIA-PSETKLWQTNYAEAFKGLDYQHQPLPQQLDSGVRQIELDVYADAKGGR----YAHPSGPKNVAAAGLPADPDFDPNGLMNKPGFKVMHVQDVDYRSTCQPFIGCLDQIKQWSQAHPNHVPIFILVETK 168          
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Match: A0A563U2A4_9SPHI (Uncharacterized protein n=2 Tax=unclassified Mucilaginibacter TaxID=2617802 RepID=A0A563U2A4_9SPHI)

HSP 1 Score: 83.2 bits (204), Expect = 3.170e-16
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 1
Query:    1 PIVALQVIGTHNSYHRRTT------VPAAERFWM----YRYPSLTEQLDRGIRNLELDIHYDWKTGRLVWQYRCFSSPGHVARVDTRFHVQLLRTWFVYHLSVLDAMTTCNCFSVCLEEIKQWSDMHPAHHILFVTIELK 390
            PI  LQ+IG+HNSY R         +  A+   M    Y + SL+EQL  G+RNLE+D++ D   G+         +PG  A  DT   +     + V+H+  +D  T C  F++CL+E+K+WS+ HP H  +F+T+  K
Sbjct:   26 PINHLQIIGSHNSYKRAIDPKLFKLLQKADSISMSKIDYEHISLSEQLGLGLRNLEIDVYADTAGGKYAHPKGLDMAPGQPA-YDTE-GLMNKPGFKVFHIQDIDYRTNCATFALCLQELKKWSEAHPNHSPVFITMNAK 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22255.5915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDQ3_ECTSI9.500e-4558.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L092_9PHAE6.740e-4457.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYL9_9PHAE6.580e-2066.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A149S9D6_GLUJA2.970e-1838.30Uncharacterized protein (Fragment) n=2 Tax=Glucono... [more]
UPI001663383E1.950e-1736.73Ca2+-dependent phosphoinositide-specific phospholi... [more]
A0A7D8FGH8_9BACT3.240e-1738.89Uncharacterized protein n=1 Tax=Granulicella sp. 5... [more]
UPI0004E1A3211.340e-1635.86phosphatidylinositol-specific phospholipase C1-lik... [more]
UPI001787A9551.500e-1637.86phosphatidylinositol-specific phospholipase C1-lik... [more]
UPI00131D2B912.460e-1636.81phosphatidylinositol-specific phospholipase C1-lik... [more]
A0A563U2A4_9SPHI3.170e-1635.71Uncharacterized protein n=2 Tax=unclassified Mucil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22255contigH-paniculata_contig22255:296..1416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue6e-38
Seed eggNOG ortholog2880.D8LDQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phosphoinositide phospholipase C, Ca2 -dependent
EggNOG OGs2DZT6@1,2S79Z@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size402
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22255.5915.1prot_H-paniculata_contig22255.5915.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22255 296..1416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929616.0072987-CDS-H-paniculata_contig22255:295..4731622929616.0072987-CDS-H-paniculata_contig22255:295..473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22255 296..473 +
1691480936.7530408-CDS-H-paniculata_contig22255:295..4731691480936.7530408-CDS-H-paniculata_contig22255:295..473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22255 296..473 +
1622929616.0298913-CDS-H-paniculata_contig22255:1075..11511622929616.0298913-CDS-H-paniculata_contig22255:1075..1151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22255 1076..1151 +
1691480936.7645204-CDS-H-paniculata_contig22255:1075..11511691480936.7645204-CDS-H-paniculata_contig22255:1075..1151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22255 1076..1151 +
1622929616.0497797-CDS-H-paniculata_contig22255:1268..14161622929616.0497797-CDS-H-paniculata_contig22255:1268..1416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22255 1269..1416 +
1691480936.7821226-CDS-H-paniculata_contig22255:1268..14161691480936.7821226-CDS-H-paniculata_contig22255:1268..1416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22255 1269..1416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22255.5915.1

>prot_H-paniculata_contig22255.5915.1 ID=prot_H-paniculata_contig22255.5915.1|Name=mRNA_H-paniculata_contig22255.5915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
PIVALQVIGTHNSYHRRTTVPAAERFWMYRYPSLTEQLDRGIRNLELDIH
YDWKTGRLVWQYRCFSSPGHVARVDTRFHVQLLRTWFVYHLSVLDAMTTC
NCFSVCLEEIKQWSDMHPAHHILFVTIELKVYGD
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mRNA from alignment at H-paniculata_contig22255:296..1416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22255.5915.1 ID=mRNA_H-paniculata_contig22255.5915.1|Name=mRNA_H-paniculata_contig22255.5915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1121bp|location=Sequence derived from alignment at H-paniculata_contig22255:296..1416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTATTGTGGCGCTTCAGGTGATAGGTACACACAACTCCTATCATCGCCG GACCACGGTGCCAGCGGCGGAGCGGTTTTGGATGTATCGATACCCTTCGC TCACCGAGCAGCTTGACCGCGGAATCCGCAACCTCGAGCTGGACATTCAC TACGACTGGAAAACTGGAAGGTTGGTTTGTACTGTCAAGGGGGGGCAGCA GATATACAAACAGCACTTTGGAAAGATTAAAACTTGATTTGGTCTAGAAT GTTCACCTTAAGATTGCCACATGTTGATACCAGTGAATTGTTTTGGGAAT ACGTACAGGTAAGGATGTAAAGCTACGCTATTTCTTGGGGAGACCTTGCA CCGGTGGAAATTTCGACTGGCCTTCGACTGGCGTCCTTGAATGTGCTGTG CTACATAGTCGTGCTCTCAGACGGAGTTTCCTTGCAGCAAGGACGAAGAT GCTGAAATAAGTGATAATGTCCCGCTCTCCGCGAAGAAGAAAGGTTTTTT GCAGACCGTTGACCTCGCGGCTCATGTTCGCGAATCTTAACTTGGTGGGA ACAAGAACAGCGGTCGCCTAGATTGATATTTAAGTTTTTAATGAAAACCT ACTCGCTCATGGATGATAATCTACCACAAACGGATCATGGCTAAAGTGTG TTTGTTTCTTCCGTTCCGAGTGCGACGTCAATATGTTTGGATGTACCACC ATTTTGTGCGTCAATCAAAAACATAGTTTGCTGGGTCAATGTGTGTGTGT GTGTATATATATATATATATCGATGCTGAGGGCAATATAGATGCTTTTCA TCGCCCGGACATGTGGCGCGTGTAGATACACGTTTTCATGTTCAACTGCT GCGCACGTTTGACTTTAGCAGAAGACTGCTGCATGTACATGCTCTGCTGA GTTTTCTCTTTGTACCACAAAAGCCTGAATAATCATGCACGCGGAGTGAA CACCTGCTCTACTTTACGCGCAGGTGGTTTGTGTATCATCTTTCAGTGCT GGATGCTATGACGACGTGCAACTGCTTTTCCGTGTGTCTGGAAGAGATCA AGCAGTGGAGCGATATGCACCCGGCGCATCATATTCTTTTCGTCACGATC GAACTCAAGGTCTACGGAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig22255:296..1416+

>mRNA_H-paniculata_contig22255.5915.1 ID=mRNA_H-paniculata_contig22255.5915.1|Name=mRNA_H-paniculata_contig22255.5915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig22255:296..1416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTATTGTGGCGCTTCAGGTGATAGGTACACACAACTCCTATCATCGCCG
GACCACGGTGCCAGCGGCGGAGCGGTTTTGGATGTATCGATACCCTTCGC
TCACCGAGCAGCTTGACCGCGGAATCCGCAACCTCGAGCTGGACATTCAC
TACGACTGGAAAACTGGAAGGTTGGTTTCCTATTGTGGCGCTTCAGGTGA
TAGGTACACACAACTCCTATCATCGCCGGACCACGGTGCCAGCGGCGGAG
CGGTTTTGGATGTATCGATACCCTTCGCTCACCGAGCAGCTTGACCGCGG
AATCCGCAACCTCGAGCTGGACATTCACTACGACTGGAAAACTGGAAGGT
TGGTTTGGCAATATAGATGCTTTTCATCGCCCGGACATGTGGCGCGTGTA
GATACACGTTTTCATGTTCAACTGCTGCGCACGGCAATATAGATGCTTTT
CATCGCCCGGACATGTGGCGCGTGTAGATACACGTTTTCATGTTCAACTG
CTGCGCACGTGGTTTGTGTATCATCTTTCAGTGCTGGATGCTATGACGAC
GTGCAACTGCTTTTCCGTGTGTCTGGAAGAGATCAAGCAGTGGAGCGATA
TGCACCCGGCGCATCATATTCTTTTCGTCACGATCGAACTCAAGGTCTAC
GGAGATGTGGTTTGTGTATCATCTTTCAGTGCTGGATGCTATGACGACGT
GCAACTGCTTTTCCGTGTGTCTGGAAGAGATCAAGCAGTGGAGCGATATG
CACCCGGCGCATCATATTCTTTTCGTCACGATCGAACTCAAGGTCTACGG
AGAT
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