mRNA_H-paniculata_contig22252.5914.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22252.5914.1
Unique NamemRNA_H-paniculata_contig22252.5914.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 136 bits (342), Expect = 5.820e-37
Identity = 71/144 (49.31%), Postives = 96/144 (66.67%), Query Frame = 1
Query:   10 FVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILGSTGFGCTGSTTLFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQRLR 441
            F D+D+  DV+ RK TTGYVF +  GAI WCSR+QQ  + S+TEAEYVAA E  KE ++LR +L         +  L+ DN+SA+ L K    H +TKHI VR+H I++  + G + ++YV++ DQLADILTK L  VKF +LR
Sbjct:  104 FSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLR 247          
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 142 bits (359), Expect = 1.600e-36
Identity = 69/142 (48.59%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   10 FVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILGSTGFGCTGSTTLFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQR 435
            +VDADW  DV DR+  +GY F L GGA+ W S+KQ     SSTEAEY+AA    KE  +LR  LG  G  C  +T L  DN+SAM +++    H +TKHI VR+H +R+ +  G + L+YV TGDQ+AD+LTKGL + K  +
Sbjct:  986 YVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: A0A4Z0A7X3_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A7X3_9AGAM)

HSP 1 Score: 133 bits (334), Expect = 5.660e-36
Identity = 68/142 (47.89%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   10 FVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILGSTGFGCTGSTTLFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQR 435
            +VDADW  DV DR   +GY F L GGAI W S+KQ     SSTEAEY+AA    KE  +L   L   G  C  +T L  DN+SAM ++     H QTKHI VR+H +R+ +  G + L+YV  GDQ+AD+LTKGL + K  +
Sbjct:   82 YVDADWAGDVNDRHSISGYTFLLAGGAISWSSKKQNMTALSSTEAEYIAAAHAAKEATWLCTFLSEIGRPCKAATLLLMDNQSAMAIAWNPVFHVQTKHIDVRYHFLREKVEAGAINLQYVPMGDQVADVLTKGLVKAKHDK 223          
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: UPI001EE6E994 (secreted RxLR effector protein 161-like n=1 Tax=Neodiprion lecontei TaxID=441921 RepID=UPI001EE6E994)

HSP 1 Score: 132 bits (332), Expect = 1.890e-35
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 1
Query:    1 LEEFVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILGSTGFGCTGSTTLFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQRLR 441
            L ++ DAD+ ED E R+ TTGYVF+L GG I W S++Q+ VT S+TEAEYV A    +E ++LR++L    + C  +T +F DN+SA+ L +    H +TKHI +R+H IR+ + E IL ++YVQT  Q  DI TK   R +F  LR
Sbjct:   96 LVDYSDADYAEDAETRRSTTGYVFQLAGGPITWASQRQKLVTLSTTEAEYVVASVTSREAIWLRKLLLDIEYPCADATVIFVDNQSAIRLVRNPEFHKRTKHIDIRYHYIREKVVEKILKIEYVQTKQQKGDIFTKAQPRERFCMLR 242          
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 132 bits (333), Expect = 2.770e-35
Identity = 77/154 (50.00%), Postives = 93/154 (60.39%), Query Frame = 1
Query:   10 FVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILG---STGFGCTGSTT----LFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQRLRNLL 450
            + DADW  D  DR+ T+ YVFKL GGAI WCSRKQQ +  SSTEAEYVA     KE ++L  +L    S  F    S      +  DN+SAM L+K S  H +TKHI VR H IR  +  G L ++YV TGDQ+AD+LTK L R K     NLL
Sbjct:  128 YSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREKHTYFTNLL 281          
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 134 bits (336), Expect = 2.870e-35
Identity = 66/142 (46.48%), Postives = 88/142 (61.97%), Query Frame = 1
Query:   10 FVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILGSTGFGCTGSTTLFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQR 435
            +VDADW  DV DR+  +GY F L GGAI W S+KQ     SSTEAEY+ A    KE  +LR  L   G  C  +T L  DN+SAM ++     H +TKHI +R+H +R+ +  G + L+YV TGDQ+AD+L KGL + K  +
Sbjct:  180 YVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321          
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: A0A176WI96_MARPO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WI96_MARPO)

HSP 1 Score: 136 bits (342), Expect = 7.490e-35
Identity = 75/148 (50.68%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    1 LEEFVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILGST-GFGCTGSTTLFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQRLR 441
            L+ F DADW  D+ DRK TTGY+F L G  I W SRKQ  V  SSTE+EY+A  E  KE V+LR +LG         STT+  DN+ ++NL++    H +TKHI VR H IR+ I  G + L YV T +QLADILTK L ++ F+RLR
Sbjct:  361 LQVFTDADWAADMHDRKSTTGYIFFLRGTPITWNSRKQPTVALSSTESEYMAVTEGAKEAVWLRRLLGKIHALDLQASTTIHGDNQGSLNLAQNPIYHGRTKHIEVRHHFIREKIASGEINLAYVSTNEQLADILTKPLGKIAFERLR 508          
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C)

HSP 1 Score: 129 bits (323), Expect = 1.240e-34
Identity = 70/147 (47.62%), Postives = 92/147 (62.59%), Query Frame = 1
Query:    1 LEEFVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILGSTGFGCTGSTTLFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQRLR 441
            L+ F DAD+  D + RK TTGYVF LNG AI W  +KQ+    S+TEAE+VA+ E GKE V++   L            LF DN+SA+ + +    H +TKHI VR+H IR+   +G++  KYV T +QLADILTK L   +FQRLR
Sbjct:   51 LKAFSDADYAGDSDSRKSTTGYVFLLNGAAISWSGKKQKCTAQSTTEAEFVASSEAGKEAVWILRGLKELEGDVPTPMELFMDNQSAIRIIRNPELHQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTKPLAAPRFQRLR 197          
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 135 bits (341), Expect = 4.300e-34
Identity = 70/144 (48.61%), Postives = 96/144 (66.67%), Query Frame = 1
Query:   10 FVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILGSTGFGCTGSTTLFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQRLR 441
            FVD+D+  DV+DRK T+GYVF L GGAI W S+KQ  VT S+TEAE+V+A     + V+LR +L   G    G T +F DN S + LSK    H ++KHI VR+H +R+ ++EG + L Y  T DQ+ADI+TK ++R  F+ LR
Sbjct: 1181 FVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVFEELR 1324          
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Match: UPI00193C8901 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193C8901)

HSP 1 Score: 127 bits (319), Expect = 7.610e-34
Identity = 68/150 (45.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:    1 LEEFVDADWEEDVEDRKFTTGYVFKLNGGAIRWCSRKQQ*VTWSSTEAEYVAAGEVGKEIVYLREILGSTGFGCTGSTTLFEDNKSAMNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKGLRRVKFQRLRNLL 450
            +E +VDAD+ ED+E R+ TTGYVF L  GA+ W +++Q+ VT S+TEAEYVAA    KE ++LR +L      C  +T +F DN+S + L + S  H +TKHI VR H IR+ +  G +  K V T  Q AD+ TK L R +F+ L  L+
Sbjct:   59 IEGYVDADFAEDLETRRSTTGYVFLLGNGAVTWTAQRQKMVTISTTEAEYVAAAAAAKEAIWLRRLLSGLERNCNRATKVFIDNQSTLRLVQNSEFHKRTKHIDVRCHFIREKVLSGKIDTKCVNTTKQKADLFTKALPRDRFKALCQLI 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22252.5914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1N3K4_PHOPY5.820e-3749.31Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A4Y9ZY34_9AGAM1.600e-3648.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Z0A7X3_9AGAM5.660e-3647.89Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
UPI001EE6E9941.890e-3546.26secreted RxLR effector protein 161-like n=1 Tax=Ne... [more]
A0A060SU91_PYCCI2.770e-3550.00Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
A0A4Y9ZSL8_9AGAM2.870e-3546.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A176WI96_MARPO7.490e-3550.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1BA65C1.240e-3447.62secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
Q9C7Y1_ARATH4.300e-3448.61Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]
UPI00193C89017.610e-3445.33secreted RxLR effector protein 161-like n=1 Tax=So... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22252contigH-paniculata_contig22252:2947..3402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.3
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog36033.XP_001642561.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tkp5 protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,3S0WE@4893,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size195
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.9239225-UTR-H-paniculata_contig22252:2946..32071622929615.9239225-UTR-H-paniculata_contig22252:2946..3207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22252 2947..3207 +
1691480936.7258093-UTR-H-paniculata_contig22252:2946..32071691480936.7258093-UTR-H-paniculata_contig22252:2946..3207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22252 2947..3207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.9488761-CDS-H-paniculata_contig22252:3207..34021622929615.9488761-CDS-H-paniculata_contig22252:3207..3402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22252 3208..3402 +
1691480936.7413447-CDS-H-paniculata_contig22252:3207..34021691480936.7413447-CDS-H-paniculata_contig22252:3207..3402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22252 3208..3402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22252.5914.1prot_H-paniculata_contig22252.5914.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22252 3208..3402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22252.5914.1

>prot_H-paniculata_contig22252.5914.1 ID=prot_H-paniculata_contig22252.5914.1|Name=mRNA_H-paniculata_contig22252.5914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MNLSKGSGAHCQTKHIGVRWHGIRKWIREGILALKYVQTGDQLADILTKG
LRRVKFQRLRNLLV*
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mRNA from alignment at H-paniculata_contig22252:2947..3402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22252.5914.1 ID=mRNA_H-paniculata_contig22252.5914.1|Name=mRNA_H-paniculata_contig22252.5914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig22252:2947..3402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAAGAATTCGTTGATGCCGATTGGGAGGAAGATGTCGAGGACCGAAA GTTCACGACAGGATACGTATTCAAACTGAACGGTGGTGCGATACGTTGGT GCTCTAGGAAGCAACAGTAGGTCACGTGGTCCAGTACAGAGGCAGAGTAC GTTGCTGCAGGAGAAGTGGGAAAGGAGATAGTGTATCTTAGGGAGATACT AGGATCGACAGGTTTCGGATGCACGGGAAGCACGACACTGTTTGAGGACA ATAAATCAGCTATGAATCTCAGTAAGGGATCTGGCGCACACTGCCAGACA AAGCACATCGGAGTGCGCTGGCACGGAATTCGAAAGTGGATTCGGGAAGG AATATTGGCATTGAAATACGTGCAGACCGGCGATCAACTTGCTGACATTT TAACGAAAGGACTAAGGAGAGTAAAGTTTCAGAGACTGAGAAATTTACTC GTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22252:2947..3402+

>mRNA_H-paniculata_contig22252.5914.1 ID=mRNA_H-paniculata_contig22252.5914.1|Name=mRNA_H-paniculata_contig22252.5914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig22252:2947..3402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCTCAGTAAGGGATCTGGCGCACACTGCCAGACAAAGCACATCGG
AGTGCGCTGGCACGGAATTCGAAAGTGGATTCGGGAAGGAATATTGGCAT
TGAAATACGTGCAGACCGGCGATCAACTTGCTGACATTTTAACGAAAGGA
CTAAGGAGAGTAAAGTTTCAGAGACTGAGAAATTTACTCGTGTGAATGAA
TCTCAGTAAGGGATCTGGCGCACACTGCCAGACAAAGCACATCGGAGTGC
GCTGGCACGGAATTCGAAAGTGGATTCGGGAAGGAATATTGGCATTGAAA
TACGTGCAGACCGGCGATCAACTTGCTGACATTTTAACGAAAGGACTAAG
GAGAGTAAAGTTTCAGAGACTGAGAAATTTACTCGTGTGA
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