mRNA_H-paniculata_contig22165.5875.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22165.5875.1
Unique NamemRNA_H-paniculata_contig22165.5875.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22165.5875.1 vs. uniprot
Match: A0A6H5KVB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.900e-27
Identity = 118/403 (29.28%), Postives = 159/403 (39.45%), Query Frame = 1 
Query:    1 RRDAWVVATGHLLIRALDP---------------MGVSKDFRD-------KGEGL--GEGDCDR--------RYEQLLTNCLPPIWYNPDTTNPSTPPEGKILSPSALSGSGSVAAVTTVPTLAVMAGRVGASSAGAFNIAAAKTASTLRSRISQKIKPSGAKSPEIEVREEDNTDEVTRRMLPPASDIPASQPEKDKDAHLRGGASAEDHGPPVDLENRHNAEALHPPAAGTDLLTPLDWPALGRKYQPSNSINCEADTLNRTRREPKRRISCKLPCSPHDAAAMSARRTANDIAKDGRQKGVDMSRKLCAFCLERRSRGALCRFCRGRAVTAFKDRKGSRKARGILVSYGSIFGIKLLTALEEEAGAEKRWVRIYDDDTGCHFFYNVHFDSAVWEGNIQLP 1113
            R  AW+VATGHLL+ ALDP                 +  D +D        GEG   G GD  +        +Y +LL NCL P W+  +  +  T     ++   A+ G         +P+L     R+  SS  A +     T S     I Q        SP + V +E + D   +    P S  P+ Q                    P+ L          P +AGT        P+     Q  NS    +   N            +LP +                        V+   K CA CL R S  A+CR C  RA  A KDR GSRKAR ILV YG  FG+    AL+ E  + KRWVR+ DD+TG  F++NVH+ S+VW+  I+LP
Sbjct:   21 RGAAWLVATGHLLLHALDPPPRGDAPAAGSDSSSSNLCNDGKDAGGRRAMSGEGRDGGRGDDGQXXXXXXXXQYRRLLDNCLEPSWH--EKKSEKTAATKTVIE--AVGGK-------EMPSLTAALTRLTNSSTSATSSMPDSTRSAKNKSIGQ------VSSPAVTVPQEGSPDNNLQAKPRPPSTPPSPQTMT-----------------PLSL----------PSSAGTGRRRRSRSPSRRSHRQGGNSTGTRSPAAN-----------TRLPATT----------------------AVEPGGKTCAVCLRRSSPAAMCRKCGRRAAKALKDRAGSRKARVILVPYGGHFGVGEADALQREGDSVKRWVRLLDDETGADFYHNVHYGSSVWKSGIELP 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22165.5875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVB6_9PHAE1.900e-2729.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22165contigH-paniculata_contig22165:664..2697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1157
Cds size1155
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929610.9890518-CDS-H-paniculata_contig22165:663..8241622929610.9890518-CDS-H-paniculata_contig22165:663..824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22165 664..824 +
1691480935.125797-CDS-H-paniculata_contig22165:663..8241691480935.125797-CDS-H-paniculata_contig22165:663..824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22165 664..824 +
1622929611.0065007-CDS-H-paniculata_contig22165:1701..26951622929611.0065007-CDS-H-paniculata_contig22165:1701..2695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22165 1702..2695 +
1691480935.1366873-CDS-H-paniculata_contig22165:1701..26951691480935.1366873-CDS-H-paniculata_contig22165:1701..2695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22165 1702..2695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22165.5875.1prot_H-paniculata_contig22165.5875.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22165 664..2695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22165.5875.1

>prot_H-paniculata_contig22165.5875.1 ID=prot_H-paniculata_contig22165.5875.1|Name=mRNA_H-paniculata_contig22165.5875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp
RRDAWVVATGHLLIRALDPMGVSKDFRDKGEGLGEGDCDRRYEQLLTNCL
PPIWYNPDTTNPSTPPEGKILSPSALSGSGSVAAVTTVPTLAVMAGRVGA
SSAGAFNIAAAKTASTLRSRISQKIKPSGAKSPEIEVREEDNTDEVTRRM
LPPASDIPASQPEKDKDAHLRGGASAEDHGPPVDLENRHNAEALHPPAAG
TDLLTPLDWPALGRKYQPSNSINCEADTLNRTRREPKRRISCKLPCSPHD
AAAMSARRTANDIAKDGRQKGVDMSRKLCAFCLERRSRGALCRFCRGRAV
TAFKDRKGSRKARGILVSYGSIFGIKLLTALEEEAGAEKRWVRIYDDDTG
CHFFYNVHFDSAVWEGNIQLPFQAASKGRSYRPRR
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mRNA from alignment at H-paniculata_contig22165:664..2697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22165.5875.1 ID=mRNA_H-paniculata_contig22165.5875.1|Name=mRNA_H-paniculata_contig22165.5875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2034bp|location=Sequence derived from alignment at H-paniculata_contig22165:664..2697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGAGATGCGTGGGTGGTGGCCACCGGGCACCTTCTCATTCGCGCCCT
CGATCCCATGGGGGTTTCCAAAGATTTTCGCGATAAAGGCGAGGGATTGG
GGGAAGGAGACTGCGATCGAAGATACGAGCAGTTGCTGACGAACTGCCTC
CCGCCGATTTGGTGCGTAGGTAAATGATGTGATGTGCTTTCGTTGGCACG
GGCGGAGGGGGGGTGGAGCGGGAGGGAAGTGGTGTGTGTGTGTGTGGGCG
ACTGTCATGGTGAATGGGTGGTACTGGGATATGTTGAACGCAACCATTGA
ATGTAGGAGAGAAGAGTACGTGCAACCACACGTGAATGGTCGGCGGGGGG
CTGGAGCTGCAGTGATCGGACTGGTGGTACGAGGACAACCTATTTCGAGG
ATTGTTAAAGCATCGAATGCGAATATTTTGATTAATTTGTTCAGTCTCCC
CTGCCCACCGGCCTAAGCCTGCGGCGCCCTTGACGCAGGATTAGCAGGCG
GAGCAAAGGGGACTTGGCTCTCATGTTGATGGTTAAAGGTGACTGGTGAA
CATGCCTGTGTCTGACTTCCGGAGAACTGAGCTTGAGGAGGCAAAACCTC
CGCCCGCTGAGCACGGTCGCGCGTCCCAGCTCAATCTGGCTTACGTCTTC
GTGACGATTCGTCTATTTCTTAGAAATAAACATCTATCTATTTTATCTAT
ATTAGGAAAGACAAGTGTAACGTCATACTGTAAAAAACCCGGCAACTTTT
GACTGCATTCTCCTGCGTTCCTCCCCCAAGATATGTCGCGTTTTTAGTAC
GTAGGCTGGAATTTAGGAGTATTACATGTAGTCCAGGTTCCATGCCCATT
TGGCTAAGAAGCGCATTTTTCGAATAGCCCCGCCCTCTCCCCGCGCTACC
AACGACCAGCGCATGACAAACATGAGTATGCTCCCCTCAGTTTGAGACTA
TTGTGTATTTCCGTTCCAACCTCACATCAATCATTGACAATGCCTTTCAC
CGACGGATTAAACCCACTCTTGTCCCAATTGGCGGCAGGTATAATCCGGA
CACGACCAACCCTTCAACACCGCCAGAAGGCAAAATTCTTTCCCCTTCAG
CACTATCGGGCTCAGGATCCGTGGCTGCGGTCACGACCGTGCCAACGTTA
GCGGTGATGGCTGGACGTGTGGGTGCCTCCTCTGCCGGAGCATTCAACAT
TGCCGCTGCAAAAACAGCTAGCACCTTGAGGTCGCGTATTAGCCAAAAAA
TCAAACCAAGCGGTGCCAAATCTCCCGAGATTGAGGTGCGCGAAGAGGAC
AATACGGATGAGGTCACTAGACGAATGTTGCCCCCAGCCTCCGACATCCC
AGCTAGCCAACCGGAGAAGGATAAAGACGCACACCTTAGAGGAGGTGCAT
CAGCTGAAGACCACGGACCTCCGGTTGATTTAGAAAATAGGCACAACGCT
GAAGCCCTACACCCCCCCGCAGCTGGAACGGACCTTCTCACCCCTCTCGA
TTGGCCGGCCTTGGGGCGAAAATACCAACCCTCGAATTCCATCAACTGTG
AAGCCGACACACTGAATCGTACAAGGAGGGAGCCCAAACGACGCATCTCA
TGTAAGCTCCCATGTAGCCCGCACGATGCTGCCGCCATGTCAGCACGCAG
GACCGCAAACGATATTGCTAAGGACGGACGACAGAAAGGCGTCGATATGT
CGAGAAAACTATGTGCCTTTTGCCTGGAACGTAGGTCTCGCGGAGCTTTG
TGTCGGTTTTGCCGGGGGCGGGCGGTGACGGCGTTTAAGGACCGGAAGGG
GTCTCGGAAAGCGAGGGGAATCCTTGTGTCGTACGGTTCAATCTTCGGGA
TAAAACTTCTGACCGCGCTGGAGGAGGAGGCTGGCGCGGAAAAACGCTGG
GTGAGAATCTACGATGATGACACGGGATGCCACTTTTTTTACAACGTACA
CTTCGATTCTGCGGTGTGGGAAGGAAATATCCAATTGCCGTTCCAAGCGG
CGAGCAAGGGTCGCAGCTATCGACCAAGGCGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig22165:664..2697+

>mRNA_H-paniculata_contig22165.5875.1 ID=mRNA_H-paniculata_contig22165.5875.1|Name=mRNA_H-paniculata_contig22165.5875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at H-paniculata_contig22165:664..2697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGAGATGCGTGGGTGGTGGCCACCGGGCACCTTCTCATTCGCGCCCT
CGATCCCATGGGGGTTTCCAAAGATTTTCGCGATAAAGGCGAGGGATTGG
GGGAAGGAGACTGCGATCGAAGATACGAGCAGTTGCTGACGAACTGCCTC
CCGCCGATTTGCGGCGAGATGCGTGGGTGGTGGCCACCGGGCACCTTCTC
ATTCGCGCCCTCGATCCCATGGGGGTTTCCAAAGATTTTCGCGATAAAGG
CGAGGGATTGGGGGAAGGAGACTGCGATCGAAGATACGAGCAGTTGCTGA
CGAACTGCCTCCCGCCGATTTGGTATAATCCGGACACGACCAACCCTTCA
ACACCGCCAGAAGGCAAAATTCTTTCCCCTTCAGCACTATCGGGCTCAGG
ATCCGTGGCTGCGGTCACGACCGTGCCAACGTTAGCGGTGATGGCTGGAC
GTGTGGGTGCCTCCTCTGCCGGAGCATTCAACATTGCCGCTGCAAAAACA
GCTAGCACCTTGAGGTCGCGTATTAGCCAAAAAATCAAACCAAGCGGTGC
CAAATCTCCCGAGATTGAGGTGCGCGAAGAGGACAATACGGATGAGGTCA
CTAGACGAATGTTGCCCCCAGCCTCCGACATCCCAGCTAGCCAACCGGAG
AAGGATAAAGACGCACACCTTAGAGGAGGTGCATCAGCTGAAGACCACGG
ACCTCCGGTTGATTTAGAAAATAGGCACAACGCTGAAGCCCTACACCCCC
CCGCAGCTGGAACGGACCTTCTCACCCCTCTCGATTGGCCGGCCTTGGGG
CGAAAATACCAACCCTCGAATTCCATCAACTGTGAAGCCGACACACTGAA
TCGTACAAGGAGGGAGCCCAAACGACGCATCTCATGTAAGCTCCCATGTA
GCCCGCACGATGCTGCCGCCATGTCAGCACGCAGGACCGCAAACGATATT
GCTAAGGACGGACGACAGAAAGGCGTCGATATGTCGAGAAAACTATGTGC
CTTTTGCCTGGAACGTAGGTCTCGCGGAGCTTTGTGTCGGTTTTGCCGGG
GGCGGGCGGTGACGGCGTTTAAGGACCGGAAGGGGTCTCGGAAAGCGAGG
GGAATCCTTGTGTCGTACGGTTCAATCTTCGGGATAAAACTTCTGACCGC
GCTGGAGGAGGAGGCTGGCGCGGAAAAACGCTGGGTGAGAATCTACGATG
ATGACACGGGATGCCACTTTTTTTACAACGTACACTTCGATTCTGCGGTG
TGGGAAGGAAATATCCAATTGCCGTTCCAAGCGGCGAGCAAGGGTCGCAG
CTATCGACCAAGGCGGGTATAATCCGGACACGACCAACCCTTCAACACCG
CCAGAAGGCAAAATTCTTTCCCCTTCAGCACTATCGGGCTCAGGATCCGT
GGCTGCGGTCACGACCGTGCCAACGTTAGCGGTGATGGCTGGACGTGTGG
GTGCCTCCTCTGCCGGAGCATTCAACATTGCCGCTGCAAAAACAGCTAGC
ACCTTGAGGTCGCGTATTAGCCAAAAAATCAAACCAAGCGGTGCCAAATC
TCCCGAGATTGAGGTGCGCGAAGAGGACAATACGGATGAGGTCACTAGAC
GAATGTTGCCCCCAGCCTCCGACATCCCAGCTAGCCAACCGGAGAAGGAT
AAAGACGCACACCTTAGAGGAGGTGCATCAGCTGAAGACCACGGACCTCC
GGTTGATTTAGAAAATAGGCACAACGCTGAAGCCCTACACCCCCCCGCAG
CTGGAACGGACCTTCTCACCCCTCTCGATTGGCCGGCCTTGGGGCGAAAA
TACCAACCCTCGAATTCCATCAACTGTGAAGCCGACACACTGAATCGTAC
AAGGAGGGAGCCCAAACGACGCATCTCATGTAAGCTCCCATGTAGCCCGC
ACGATGCTGCCGCCATGTCAGCACGCAGGACCGCAAACGATATTGCTAAG
GACGGACGACAGAAAGGCGTCGATATGTCGAGAAAACTATGTGCCTTTTG
CCTGGAACGTAGGTCTCGCGGAGCTTTGTGTCGGTTTTGCCGGGGGCGGG
CGGTGACGGCGTTTAAGGACCGGAAGGGGTCTCGGAAAGCGAGGGGAATC
CTTGTGTCGTACGGTTCAATCTTCGGGATAAAACTTCTGACCGCGCTGGA
GGAGGAGGCTGGCGCGGAAAAACGCTGGGTGAGAATCTACGATGATGACA
CGGGATGCCACTTTTTTTACAACGTACACTTCGATTCTGCGGTGTGGGAA
GGAAATATCCAATTGCCGTTCCAAGCGGCGAGCAAGGGTCGCAGCTATCG
ACCAAGGCGG
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