mRNA_H-paniculata_contig22111.5854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22111.5854.1
Unique NamemRNA_H-paniculata_contig22111.5854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A6D2KMT4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT4_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 7.770e-16
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   97 CKGCSTAKAHRFAVPKKTDRATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPKGLKVGVIRTENSGEFYGDFHLEL-GEHGIIHELT 447
            C+GC   K+HR      T R     ER++ DL GP R +S  G  Y+++ VDDYSR+  V F+K+KS+  +  Q +        G K+  +RT+N GEF  +  L    +HGI  E +
Sbjct:  476 CEGCQYGKSHRLPFDNSTSRCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFS 593          
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A6D2JZV9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JZV9_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 7.780e-16
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   97 CKGCSTAKAHRFAVPKKTDRATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPKGLKVGVIRTENSGEFYGDFHLEL-GEHGIIHELT 447
            C+GC   K+HR      T R     ER++ DL GP R +S  G  Y+++ VDDYSR+  V F+K+KS+  +  Q +        G K+  +RT+N GEF  +  L    +HGI  E +
Sbjct:  162 CEGCQYGKSHRLPFDNSTSRCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFS 279          
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A6D2KKQ4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KKQ4_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 7.790e-16
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   97 CKGCSTAKAHRFAVPKKTDRATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPKGLKVGVIRTENSGEFYGDFHLEL-GEHGIIHELT 447
            C+GC   K+HR      T R     ER++ DL GP R +S  G  Y+++ VDDYSR+  V F+K+KS+  +  Q +        G K+  +RT+N GEF  +  L    +HGI  E +
Sbjct:  476 CEGCQYGKSHRLPFDNSTSRCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFS 593          
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A6D2KB33_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB33_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 8.100e-16
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   97 CKGCSTAKAHRFAVPKKTDRATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPKGLKVGVIRTENSGEFYGDFHLEL-GEHGIIHELT 447
            C+GC   K+HR      T R     ER++ DL GP R +S  G  Y+++ VDDYSR+  V F+K+KS+  +  Q +        G K+  +RT+N GEF  +  L    +HGI  E +
Sbjct:  476 CEGCQYGKSHRLPFDNSTSRCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFS 593          
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A6D2JWG0_9BRAS (Uncharacterized protein n=10 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JWG0_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 8.230e-16
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   97 CKGCSTAKAHRFAVPKKTDRATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPKGLKVGVIRTENSGEFYGDFHLEL-GEHGIIHELT 447
            C+GC   K+HR      T R     ER++ DL GP R +S  G  Y+++ VDDYSR+  V F+K+KS+  +  Q +        G K+  +RT+N GEF  +  L    +HGI  E +
Sbjct:  476 CEGCQYGKSHRLPFDNSTSRCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFS 593          
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A6D2KB39_9BRAS (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB39_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 8.430e-16
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   97 CKGCSTAKAHRFAVPKKTDRATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPKGLKVGVIRTENSGEFYGDFHLEL-GEHGIIHELT 447
            C+GC   K+HR      T R     ER++ DL GP R +S  G  Y+++ VDDYSR+  V F+K+KS+  +  Q +        G K+  +RT+N GEF  +  L    +HGI  E +
Sbjct:  750 CEGCQYGKSHRLPFDNSTSRCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFS 867          
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A1D2M5N7_ORCCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2M5N7_ORCCI)

HSP 1 Score: 82.4 bits (202), Expect = 1.940e-15
Identity = 55/151 (36.42%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   10 HRLLAHAS-----EQITRDTAATVGV-VLTGEWGGCKGCSTAKAHRFAVPKKTDR-ATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPKGLKVGVIRTENSGEFYG-DFHLELGEHGIIH 438
            H  LAH +     E I R+ AA + +  L+GE+  C+ C   KAH+   P+  +  A   AE ++VDL G    TSLGGSSY ++I D+ + F+AV F+K K++A   +  Y+         +V ++R++N  EF   D    L E GIIH
Sbjct:  451 HSRLAHVNLDYIKETIKREAAAGIALGELSGEFS-CEECILGKAHKSPFPRVPENTAITPAEIMHVDLSGKYDTTSLGGSSYFLLIKDERTSFRAVYFLKSKAEAAGCIMRYVNFIENQTNHQVRILRSDNGTEFVNHDLTSFLNEKGIIH 600          
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A6H5GTD8_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GTD8_9HEMI)

HSP 1 Score: 82.0 bits (201), Expect = 2.760e-15
Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   97 CKGCSTAKAHRFAVPKKTDRATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPKGLKVGVIRTENSGEFYG-DFHLELGEHGIIHELTPS 453
            C  C   K  +   PKK+ R +   + +++DL GPMR  S GG+ Y + ++DDYSR+  ++F+KKKSD  A  + +     T KG K+  I+++N  EF   +F   L E+GI   LT +
Sbjct:  440 CTICLQGKMTQTPFPKKSSRTSQKLDLIHMDLCGPMRVQSKGGAKYFLTLIDDYSRWCEIRFLKKKSDVFAEFKKFKNLVETQKGRKIKCIQSDNGKEFCNREFDRYLEENGISRRLTVN 559          
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.920e-15
Identity = 59/171 (34.50%), Postives = 78/171 (45.61%), Query Frame = 1
Query:   10 HRLLAHASEQITRDTAATVGVVLT-GEWGGCKGCSTAKAHRFA---------------------VPKKTD-RATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPK-GLKVGVIRTENSGEFYGDFHLELGEHGIIHELTP 450
            H    H  E + R TA   GV LT G    C GCS  K                          V K T  RA     R+Y+DLGG M+  S+G   Y ++I DD+SR+  V F+K KSDA    + ++ +Y T +   +V + RT++ GEF G F      HGI  E TP
Sbjct:  139 HLAHGHDHETLLRITAEQQGVQLTDGPLLPCLGCSVFKGXXXXXXXXXXXXXXXXXXXXXQVKPVQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTP 309          
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Match: A0A8J5ESC8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5ESC8_ZINOF)

HSP 1 Score: 81.3 bits (199), Expect = 5.020e-15
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 1
Query:   91 GGCKGCSTAKAHRFAVPKKTDRATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAALQTYIAEYITPKGLKVGVIRTENSGEFYGDFHLEL-GEHGIIHELT 447
            G C+GC   K+HR      T R T   ER++ DL GP + TS    +Y+++ VDDYSRF  V F+K KS+  +    +        G K+  +RT+N GEF  +  L    ++GI  EL+
Sbjct:  384 GVCEGCQFGKSHRLPFENSTSRCTTPLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELS 503          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22111.5854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2KMT4_9BRAS7.770e-1636.44Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2JZV9_9BRAS7.780e-1636.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KKQ4_9BRAS7.790e-1636.44Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2KB33_9BRAS8.100e-1636.44Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2JWG0_9BRAS8.230e-1636.44Uncharacterized protein n=10 Tax=Coluteocarpeae Ta... [more]
A0A6D2KB39_9BRAS8.430e-1636.44ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase n=... [more]
A0A1D2M5N7_ORCCI1.940e-1536.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5GTD8_9HEMI2.760e-1536.67Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KGJ8_9PHAE2.920e-1534.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5ESC8_ZINOF5.020e-1536.67Uncharacterized protein n=1 Tax=Zingiber officinal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22111contigH-paniculata_contig22111:87..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue6.8e-14
Seed eggNOG ortholog159749.K0QZP2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PIF1-like helicase
EggNOG OGs2XG4E@2836,COG0507@1,COG2801@1,KOG0017@2759,KOG0987@2759
COG Functional cat.L
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.1636157-CDS-H-paniculata_contig22111:86..5391622929608.1636157-CDS-H-paniculata_contig22111:86..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22111 87..539 -
1691480934.0500226-CDS-H-paniculata_contig22111:86..5391691480934.0500226-CDS-H-paniculata_contig22111:86..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22111 87..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22111.5854.1prot_H-paniculata_contig22111.5854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22111 87..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22111.5854.1

>prot_H-paniculata_contig22111.5854.1 ID=prot_H-paniculata_contig22111.5854.1|Name=mRNA_H-paniculata_contig22111.5854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MNKHRLLAHASEQITRDTAATVGVVLTGEWGGCKGCSTAKAHRFAVPKKT
DRATWAAERLYVDLGGPMRATSLGGSSYVIIIVDDYSRFQAVKFIKKKSD
ATAALQTYIAEYITPKGLKVGVIRTENSGEFYGDFHLELGEHGIIHELTP
S
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mRNA from alignment at H-paniculata_contig22111:87..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22111.5854.1 ID=mRNA_H-paniculata_contig22111.5854.1|Name=mRNA_H-paniculata_contig22111.5854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=453bp|location=Sequence derived from alignment at H-paniculata_contig22111:87..539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAAGCACCGACTGCTTGCACATGCGAGCGAGCAGATTACAAGGGA TACGGCGGCAACGGTCGGCGTCGTGCTGACGGGTGAGTGGGGGGGCTGCA AAGGATGCTCCACTGCGAAGGCTCATCGATTCGCCGTGCCGAAAAAGACA GACAGAGCCACATGGGCAGCGGAGCGCCTATACGTCGACCTGGGCGGACC CATGCGAGCAACCAGCCTGGGCGGTAGCTCGTATGTGATTATTATCGTCG ACGATTACTCGCGGTTCCAGGCTGTCAAGTTCATCAAGAAGAAGAGCGAC GCCACTGCAGCTCTTCAGACCTACATCGCCGAATACATCACGCCAAAGGG ACTCAAGGTCGGCGTCATTCGCACGGAGAACAGCGGGGAGTTCTATGGCG ATTTTCACCTCGAGCTAGGCGAGCACGGCATTATTCACGAGCTCACACCC TCC
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Coding sequence (CDS) from alignment at H-paniculata_contig22111:87..539-

>mRNA_H-paniculata_contig22111.5854.1 ID=mRNA_H-paniculata_contig22111.5854.1|Name=mRNA_H-paniculata_contig22111.5854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig22111:87..539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAAGCACCGACTGCTTGCACATGCGAGCGAGCAGATTACAAGGGA
TACGGCGGCAACGGTCGGCGTCGTGCTGACGGGTGAGTGGGGGGGCTGCA
AAGGATGCTCCACTGCGAAGGCTCATCGATTCGCCGTGCCGAAAAAGACA
GACAGAGCCACATGGGCAGCGGAGCGCCTATACGTCGACCTGGGCGGACC
CATGCGAGCAACCAGCCTGGGCGGTAGCTCGTATGTGATTATTATCGTCG
ACGATTACTCGCGGTTCCAGGCTGTCAAGTTCATCAAGAAGAAGAGCGAC
GCCACTGCAGCTCTTCAGACCTACATCGCCGAATACATCACGCCAAAGGG
ACTCAAGGTCGGCGTCATTCGCACGGAGAACAGCGGGGAGTTCTATGGCG
ATTTTCACCTCGAGCTAGGCGAGCACGGCATTATTCACGAGCTCACACCC
TCCATGAACAAGCACCGACTGCTTGCACATGCGAGCGAGCAGATTACAAG
GGATACGGCGGCAACGGTCGGCGTCGTGCTGACGGGTGAGTGGGGGGGCT
GCAAAGGATGCTCCACTGCGAAGGCTCATCGATTCGCCGTGCCGAAAAAG
ACAGACAGAGCCACATGGGCAGCGGAGCGCCTATACGTCGACCTGGGCGG
ACCCATGCGAGCAACCAGCCTGGGCGGTAGCTCGTATGTGATTATTATCG
TCGACGATTACTCGCGGTTCCAGGCTGTCAAGTTCATCAAGAAGAAGAGC
GACGCCACTGCAGCTCTTCAGACCTACATCGCCGAATACATCACGCCAAA
GGGACTCAAGGTCGGCGTCATTCGCACGGAGAACAGCGGGGAGTTCTATG
GCGATTTTCACCTCGAGCTAGGCGAGCACGGCATTATTCACGAGCTCACA
CCCTCC
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