mRNA_H-paniculata_contig22003.5821.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22003.5821.1
Unique NamemRNA_H-paniculata_contig22003.5821.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: D7G571_ECTSI (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G571_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.400e-32
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
            QGD+V  DV GV+ AVE S GA+ VLCVVTTTSCFAPRLPDKVDEVARIC++ GVGHVINNAYGVQCS+TCRL+NR
Sbjct:  194 QGDAVATDVDGVRAAVE-SCGAENVLCVVTTTSCFAPRLPDKVDEVARICAASGVGHVINNAYGVQCSKTCRLVNR 268          
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7R9VU14_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VU14_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.690e-22
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    7 DSVLADV-AGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
            D V+ D+ A VK   EN G    VL +VTTTSCFAPR+PD VDEVAR+C + GV HVINNAYG+QC RT +LINR
Sbjct:    7 DEVVTDMDALVKALKENEG---TVLAIVTTTSCFAPRVPDAVDEVARLCENEGVAHVINNAYGLQCDRTSKLINR 78          
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7S1ZJX1_TRICV (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJX1_TRICV)

HSP 1 Score: 95.9 bits (237), Expect = 1.050e-21
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    7 DSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
            D V+ D+  V+ A+   GG  +VL VVTT SCFAPR PD VDEVARIC+  GV H+IN+AYG+QC RTC+LINR
Sbjct:   92 DEVVTDLDAVESALRTHGG--RVLAVVTTASCFAPRAPDSVDEVARICAREGVAHLINDAYGLQCGRTCKLINR 163          
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A448Z7C0_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7C0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.950e-21
Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
            +GD V+ D+  ++ A+   G  ++VL V+TTTSCFAPR+PD VD+VA++C + GV HVINNAYG+QC+RT +LINR
Sbjct:  225 EGDEVVTDMDAMEAALSEYG--ERVLAVITTTSCFAPRVPDAVDKVAKLCKASGVYHVINNAYGLQCARTSKLINR 298          
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A0G4G1W0_VITBC (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G1W0_VITBC)

HSP 1 Score: 93.6 bits (231), Expect = 1.390e-20
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    4 GDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLI 222
            GD++  DV  ++ A+   G AD VLCV TTTS FAPR+PD VD+VA++CS +GV H++NNAYG+QCS+ C L+
Sbjct:  196 GDALCTDVPAIEAAIARVG-ADSVLCVSTTTSTFAPRVPDSVDQVAQLCSRVGVPHIVNNAYGLQCSKCCHLV 267          
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7S0Y830_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y830_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.820e-20
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
            +GDSV+ D   ++ A+     +DKVL ++TTTSCFAPR+PD VDEVA++C +  V HVINNAYG+QC++T +LINR
Sbjct:  214 EGDSVVTDTQAMEQALNEH--SDKVLAIITTTSCFAPRVPDAVDEVAKLCKTYEVYHVINNAYGLQCNKTSKLINR 287          
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7S4A9Y3_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9Y3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.840e-20
Identity = 41/76 (53.95%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
            +GD V+ D+  ++VA+   G  ++VL V+TTTSCFAPR+PD VD+VA++C +  V HV+NNAYG+QC++T +LINR
Sbjct:  254 EGDEVVTDIDAMEVALNEHG--ERVLAVITTTSCFAPRVPDAVDKVAKLCKASNVYHVMNNAYGLQCAKTSKLINR 327          
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7S3JSH7_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSH7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.280e-19
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    4 GDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
            GD +  DV  ++ A++  GGA  +L +++TTSCFAPR PD V+ V +IC+   + H+INNAYGVQCS TC  I+R
Sbjct:  219 GDELRTDVHAIEQAIQELGGAQNILAIISTTSCFAPRAPDDVESVGKICAKFNIFHIINNAYGVQCSITCAAISR 293          
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A5J4XJZ9_9CHLO (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XJZ9_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 2.150e-19
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    4 GDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLI 222
            GD +  D+  VK  VE  G A+ ++CVVTT+SCFAPR  DK+ ++A++CSS+G+GHVINNAYGVQ +  C+LI
Sbjct:  196 GDQLTTDLEAVKTQVEKLG-AESIVCVVTTSSCFAPRGADKLVDIAKLCSSVGIGHVINNAYGVQSAALCKLI 267          
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A1Y1I1V3_KLENI (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1V3_KLENI)

HSP 1 Score: 89.7 bits (221), Expect = 3.430e-19
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
            +GD +  DVA ++ A     G+D+++CV+TTTSCFA R PD+V+EVA++C  +GVGH+INNAYGVQC+  C  I +
Sbjct:  195 EGDQLRTDVAAIQ-AKSAELGSDQIVCVLTTTSCFATRAPDRVEEVAKLCQKLGVGHIINNAYGVQCAVICGSITQ 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G571_ECTSI5.400e-3280.26O-phosphoseryl-tRNA(Sec) selenium transferase n=2 ... [more]
A0A7R9VU14_9STRA4.690e-2264.00O-phosphoseryl-tRNA(Sec) selenium transferase (Fra... [more]
A0A7S1ZJX1_TRICV1.050e-2162.16O-phosphoseryl-tRNA(Sec) selenium transferase (Fra... [more]
A0A448Z7C0_9STRA9.950e-2156.58O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A0G4G1W0_VITBC1.390e-2056.16O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A7S0Y830_9STRA1.820e-2056.58O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A7S4A9Y3_9STRA4.840e-2053.95O-phosphoseryl-tRNA(Sec) selenium transferase (Fra... [more]
A0A7S3JSH7_9STRA1.280e-1950.67O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A5J4XJZ9_9CHLO2.150e-1956.16O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A1Y1I1V3_KLENI3.430e-1952.63O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22003contigH-paniculata_contig22003:363..593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3e-26
Seed eggNOG ortholog2880.D7G571
Preferred nameSEPSECS
KEGG rclassRC02965,RC02966
KEGG koko:K03341
KEGG ReactionR08224
KEGG Pathwayko00450,ko00970,map00450,map00970
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001514,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009069,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016259,GO:0016740,GO:0016785,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0098621,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:2000112
EggNOG free text desc.transferase activity, transferring selenium-containing groups
EggNOG OGsCOG0076@1,KOG3843@2759
EC2.9.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.968903-CDS-H-paniculata_contig22003:362..5931622929603.968903-CDS-H-paniculata_contig22003:362..593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22003 363..593 -
1691480932.1803715-CDS-H-paniculata_contig22003:362..5931691480932.1803715-CDS-H-paniculata_contig22003:362..593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22003 363..593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22003.5821.1prot_H-paniculata_contig22003.5821.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22003 363..593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22003.5821.1

>prot_H-paniculata_contig22003.5821.1 ID=prot_H-paniculata_contig22003.5821.1|Name=mRNA_H-paniculata_contig22003.5821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARIC
SSIGVGHVINNAYGVQCSRTCRLINR*
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mRNA from alignment at H-paniculata_contig22003:363..593-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22003.5821.1 ID=mRNA_H-paniculata_contig22003.5821.1|Name=mRNA_H-paniculata_contig22003.5821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig22003:363..593- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAGACTCGGTCCTAGCTGACGTCGCTGGCGTGAAGGTGGCTGTAGA GAACAGCGGCGGCGCCGATAAAGTTCTGTGCGTTGTGACAACGACCAGCT GCTTCGCCCCCAGGCTTCCAGACAAGGTGGACGAGGTCGCTCGCATCTGT TCCTCTATCGGAGTAGGCCACGTGATAAACAATGCTTACGGTGTGCAGTG CTCAAGGACATGTCGGCTGATCAACAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig22003:363..593-

>mRNA_H-paniculata_contig22003.5821.1 ID=mRNA_H-paniculata_contig22003.5821.1|Name=mRNA_H-paniculata_contig22003.5821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig22003:363..593- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAGACTCGGTCCTAGCTGACGTCGCTGGCGTGAAGGTGGCTGTAGA
GAACAGCGGCGGCGCCGATAAAGTTCTGTGCGTTGTGACAACGACCAGCT
GCTTCGCCCCCAGGCTTCCAGACAAGGTGGACGAGGTCGCTCGCATCTGT
TCCTCTATCGGAGTAGGCCACGTGATAAACAATGCTTACGGTGTGCAGTG
CTCAAGGACATGTCGGCTGATCAACAGGTAACAGGGAGACTCGGTCCTAG
CTGACGTCGCTGGCGTGAAGGTGGCTGTAGAGAACAGCGGCGGCGCCGAT
AAAGTTCTGTGCGTTGTGACAACGACCAGCTGCTTCGCCCCCAGGCTTCC
AGACAAGGTGGACGAGGTCGCTCGCATCTGTTCCTCTATCGGAGTAGGCC
ACGTGATAAACAATGCTTACGGTGTGCAGTGCTCAAGGACATGTCGGCTG
ATCAACAGGTAA
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