mRNA_H-paniculata_contig22003.5821.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: D7G571_ECTSI (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G571_ECTSI) HSP 1 Score: 125 bits (314), Expect = 5.400e-32 Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 1
Query: 1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
QGD+V DV GV+ AVE S GA+ VLCVVTTTSCFAPRLPDKVDEVARIC++ GVGHVINNAYGVQCS+TCRL+NR
Sbjct: 194 QGDAVATDVDGVRAAVE-SCGAENVLCVVTTTSCFAPRLPDKVDEVARICAASGVGHVINNAYGVQCSKTCRLVNR 268
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7R9VU14_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VU14_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 4.690e-22 Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 7 DSVLADV-AGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
D V+ D+ A VK EN G VL +VTTTSCFAPR+PD VDEVAR+C + GV HVINNAYG+QC RT +LINR
Sbjct: 7 DEVVTDMDALVKALKENEG---TVLAIVTTTSCFAPRVPDAVDEVARLCENEGVAHVINNAYGLQCDRTSKLINR 78
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7S1ZJX1_TRICV (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJX1_TRICV) HSP 1 Score: 95.9 bits (237), Expect = 1.050e-21 Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 7 DSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
D V+ D+ V+ A+ GG +VL VVTT SCFAPR PD VDEVARIC+ GV H+IN+AYG+QC RTC+LINR
Sbjct: 92 DEVVTDLDAVESALRTHGG--RVLAVVTTASCFAPRAPDSVDEVARICAREGVAHLINDAYGLQCGRTCKLINR 163
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A448Z7C0_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7C0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 9.950e-21 Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 1
Query: 1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
+GD V+ D+ ++ A+ G ++VL V+TTTSCFAPR+PD VD+VA++C + GV HVINNAYG+QC+RT +LINR
Sbjct: 225 EGDEVVTDMDAMEAALSEYG--ERVLAVITTTSCFAPRVPDAVDKVAKLCKASGVYHVINNAYGLQCARTSKLINR 298
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A0G4G1W0_VITBC (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G1W0_VITBC) HSP 1 Score: 93.6 bits (231), Expect = 1.390e-20 Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1
Query: 4 GDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLI 222
GD++ DV ++ A+ G AD VLCV TTTS FAPR+PD VD+VA++CS +GV H++NNAYG+QCS+ C L+
Sbjct: 196 GDALCTDVPAIEAAIARVG-ADSVLCVSTTTSTFAPRVPDSVDQVAQLCSRVGVPHIVNNAYGLQCSKCCHLV 267
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7S0Y830_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y830_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.820e-20 Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
+GDSV+ D ++ A+ +DKVL ++TTTSCFAPR+PD VDEVA++C + V HVINNAYG+QC++T +LINR
Sbjct: 214 EGDSVVTDTQAMEQALNEH--SDKVLAIITTTSCFAPRVPDAVDEVAKLCKTYEVYHVINNAYGLQCNKTSKLINR 287
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7S4A9Y3_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9Y3_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 4.840e-20 Identity = 41/76 (53.95%), Postives = 60/76 (78.95%), Query Frame = 1
Query: 1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
+GD V+ D+ ++VA+ G ++VL V+TTTSCFAPR+PD VD+VA++C + V HV+NNAYG+QC++T +LINR
Sbjct: 254 EGDEVVTDIDAMEVALNEHG--ERVLAVITTTSCFAPRVPDAVDKVAKLCKASNVYHVMNNAYGLQCAKTSKLINR 327
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A7S3JSH7_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSH7_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.280e-19 Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 4 GDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
GD + DV ++ A++ GGA +L +++TTSCFAPR PD V+ V +IC+ + H+INNAYGVQCS TC I+R
Sbjct: 219 GDELRTDVHAIEQAIQELGGAQNILAIISTTSCFAPRAPDDVESVGKICAKFNIFHIINNAYGVQCSITCAAISR 293
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A5J4XJZ9_9CHLO (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XJZ9_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 2.150e-19 Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1
Query: 4 GDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLI 222
GD + D+ VK VE G A+ ++CVVTT+SCFAPR DK+ ++A++CSS+G+GHVINNAYGVQ + C+LI
Sbjct: 196 GDQLTTDLEAVKTQVEKLG-AESIVCVVTTSSCFAPRGADKLVDIAKLCSSVGIGHVINNAYGVQSAALCKLI 267
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Match: A0A1Y1I1V3_KLENI (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1V3_KLENI) HSP 1 Score: 89.7 bits (221), Expect = 3.430e-19 Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 1 QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICSSIGVGHVINNAYGVQCSRTCRLINR 228
+GD + DVA ++ A G+D+++CV+TTTSCFA R PD+V+EVA++C +GVGH+INNAYGVQC+ C I +
Sbjct: 195 EGDQLRTDVAAIQ-AKSAELGSDQIVCVLTTTSCFATRAPDRVEEVAKLCQKLGVGHIINNAYGVQCAVICGSITQ 269 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22003.5821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22003.5821.1 >prot_H-paniculata_contig22003.5821.1 ID=prot_H-paniculata_contig22003.5821.1|Name=mRNA_H-paniculata_contig22003.5821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp QGDSVLADVAGVKVAVENSGGADKVLCVVTTTSCFAPRLPDKVDEVARICback to top mRNA from alignment at H-paniculata_contig22003:363..593- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22003.5821.1 ID=mRNA_H-paniculata_contig22003.5821.1|Name=mRNA_H-paniculata_contig22003.5821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig22003:363..593- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22003:363..593- >mRNA_H-paniculata_contig22003.5821.1 ID=mRNA_H-paniculata_contig22003.5821.1|Name=mRNA_H-paniculata_contig22003.5821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig22003:363..593- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |