mRNA_H-paniculata_contig22001.5820.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: A0A1J3H344_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H344_NOCCA) HSP 1 Score: 57.4 bits (137), Expect = 1.690e-7 Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 61 NMWVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTTDVPATLE-VSYLPELNFNLLSLH 297
N W+ DSGA++HM +L + +P TG D V++GDGS +++ H G L L HS P +L+ V +P + NL+S++
Sbjct: 48 NAWLMDSGATHHMTSDLHHL-STNQPYTGNDAVLIGDGSGLSITHTGSLSLPSHSR---PLSLKSVLCVPNIKKNLISVY 123
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: UPI00053978D8 (uncharacterized protein LOC104727812 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053978D8) HSP 1 Score: 57.4 bits (137), Expect = 1.860e-7 Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 61 NMWVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTTDVPATL-EVSYLPELNFNLLSLH 297
N W+ DSGA++HM NL + +P G+D V++GDGS +++ H G L L +S P +L V +P ++ NLLS++
Sbjct: 322 NPWILDSGATHHMTSNLGNLAS-HQPYQGDDAVLIGDGSGLSISHTGSLSLPSNSK---PLSLTNVLCVPHIHKNLLSVY 397
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU) HSP 1 Score: 56.2 bits (134), Expect = 5.040e-7 Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 61 NMWVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTTDVPATLEVSYLPELNFNLLSLH 297
N+W+ADSGASNH+ N++ + P TG + + +GDG+ + + H I H++ L V ++P++ NLLS+H
Sbjct: 116 NLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPISHTRST--ILHTSNAKFHLLNVLHVPQVAHNLLSVH 191
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU) HSP 1 Score: 55.1 bits (131), Expect = 8.060e-7 Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 61 NMWVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTTDVPATLEVSYLPELNFNLLSLH 297
N+W+ADSGASNH+ N++ + P TG + + +GDG+ + + + G I H++ L V + P++ NLLS+H
Sbjct: 23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVH 98
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: A0A4Y1RWS6_PRUDU (Uncharacterized protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RWS6_PRUDU) HSP 1 Score: 55.5 bits (132), Expect = 9.650e-7 Identity = 27/78 (34.62%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 67 WVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTT-DVPATLEVSYLPELNFNLLSLH 297
W+ADSGAS+HM+ +++ + + P + V++G+G + ++H+G + C ST+ +P+ V ++P+L+ NLLS+H
Sbjct: 440 WIADSGASHHMVSDISSLTHVA-PCESTEQVIVGNGEGLKIKHIGTTAIACDSTSLRMPS---VFHVPQLSANLLSVH 513
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: A0A4Y1QYH0_PRUDU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QYH0_PRUDU) HSP 1 Score: 55.1 bits (131), Expect = 1.310e-6 Identity = 27/78 (34.62%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 67 WVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTT-DVPATLEVSYLPELNFNLLSLH 297
W+ADSGAS+HM+ +++ + + P + V++G+G + ++H+G + C ST+ +P+ V ++P+L+ NLLS+H
Sbjct: 165 WIADSGASHHMVSDISSLTHVA-PCESTEQVIVGNGEGLKIKHIGTTAIACASTSLRMPS---VFHVPQLSANLLSVH 238
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: A0A4Y1RLH4_PRUDU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLH4_PRUDU) HSP 1 Score: 54.7 bits (130), Expect = 1.780e-6 Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 64 MWVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTTDVPATLEVSYLPELNFNLLSLH 297
+W+ADSGAS+HM+ ++ M D P T D V +G+G + ++H+G + +TT + V ++P+L NLLS++
Sbjct: 109 VWIADSGASHHMVPHMTTM-DSASPCTSFDQVRVGNGEGLRIDHIGSSHI--PTTTSSLSLSSVFHIPQLTANLLSVY 183
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: UPI001C7A084A (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7A084A) HSP 1 Score: 53.5 bits (127), Expect = 2.910e-6 Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 67 WVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTTDVPATLEVSYLPELNFNLLSL 294
W AD+GAS HM N + ++R+ + G D V++GDGS+ T+ H+G D I S +V +P+L NLLS+
Sbjct: 121 WTADTGASAHMTGNSGMLSNLRQYL-GHDAVLIGDGSLHTITHIG--DTIIQSGHSFIKLKDVLLVPDLAKNLLSI 193
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: A0A4Y1RCX8_PRUDU (Uncharacterized protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RCX8_PRUDU) HSP 1 Score: 53.5 bits (127), Expect = 4.590e-6 Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 64 MWVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTTDV--PATLEVSYLPELNFNLLSLH 297
+W+ADSGAS+HM+ N +++ D P ++ V +G+G+ +T++++G + C +T + P+ L V P+L NLLS+H
Sbjct: 376 VWIADSGASHHMVGNSSQL-DHVTPCNVDENVTVGNGAGLTIQNLGTATISCAQSTSLHLPSVLHV---PKLRANLLSVH 451
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Match: A0A4Y1QZM5_PRUDU (Integrase catalytic domain-containing protein n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QZM5_PRUDU) HSP 1 Score: 53.1 bits (126), Expect = 6.280e-6 Identity = 28/79 (35.44%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 64 MWVADSGASNHMMKNLAKMYDIRKPVTGEDVVMLGDGSIMTVEHVGKLDLICHSTTDVPATL-EVSYLPELNFNLLSLH 297
+W+ADSGAS+HM+ ++ M+++ P T + V++G+G + + H+GK + T TL +V ++P+L NLLS++
Sbjct: 376 VWIADSGASHHMVPHMTTMHNVT-PCTSAENVVVGNGEGLHIAHIGKSHI---PTVSSSLTLSKVLHVPQLTANLLSVY 450 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22001.5820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22001.5820.1 >prot_H-paniculata_contig22001.5820.1 ID=prot_H-paniculata_contig22001.5820.1|Name=mRNA_H-paniculata_contig22001.5820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp DLPVAFTNQNSVRNDAINNGNMWVADSGASNHMMKNLAKMYDIRKPVTGEback to top mRNA from alignment at H-paniculata_contig22001:3964..4263+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22001.5820.1 ID=mRNA_H-paniculata_contig22001.5820.1|Name=mRNA_H-paniculata_contig22001.5820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig22001:3964..4263+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22001:3964..4263+ >mRNA_H-paniculata_contig22001.5820.1 ID=mRNA_H-paniculata_contig22001.5820.1|Name=mRNA_H-paniculata_contig22001.5820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig22001:3964..4263+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |