mRNA_H-paniculata_contig21990.5810.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI) HSP 1 Score: 177 bits (450), Expect = 2.580e-49 Identity = 88/120 (73.33%), Postives = 102/120 (85.00%), Query Frame = 1
Query: 7 GLTQAHYEVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMS--GEDRTQWLRIEKGK 360
G++Q ++ VPTP E V+LVASDM GA DTPLF SSESIL+GVRHILAREIA EPRVKAKCR YR+ A+VST PTA+GKEEIDAFHPLYGLHYL+ K + +F+S G DRTQWL+IEKGK
Sbjct: 732 GISQRYFPVPTPPEAVELVASDMKGAEDTPLFSSSESILQGVRHILAREIALEPRVKAKCRATYRRYALVSTTPTAKGKEEIDAFHPLYGLHYLDRKAISEFLSTHGSDRTQWLQIEKGK 851
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A7S4D4S7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4S7_HETAK) HSP 1 Score: 79.0 bits (193), Expect = 2.080e-16 Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 1
Query: 25 YEVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMS 318
Y P P P + +A + F ++E + R R +LA E+A EP ++ +CR +R+ A VST PTA+G+ EID FHPL+GL YL K DF++
Sbjct: 7 YSCPRPPTPDARTVAALAQQFTSDTFPTAEDVHRAGRFMLATELAAEPFLRHRCRLAFRRHATVSTLPTAKGRAEIDFFHPLHGLQYLQRKPAEDFLN 104
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A0W8C7C2_PHYNI (Transcription elongation factor SPT6 n=22 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C7C2_PHYNI) HSP 1 Score: 79.7 bits (195), Expect = 6.180e-15 Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
+VPTP E ++A T F + + +++G RHI A ++A EP V+ RELYR++A++ST+ TA+G+EEID FH +GL Y+ V D D WL+I + +
Sbjct: 533 DVPTPDESPGVLAQKYT----TKEFPTVDDVMKGARHIAASKVAAEPNVRKCIRELYRQNAVLSTEATAKGREEIDEFHYCHGLQYIEKMPVLDVFEASDL--WLKISRAE 637
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A6A3N3W0_9STRA (Transcription elongation factor n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3N3W0_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 8.430e-15 Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 19 AHYEVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
++ +VPTP E ++A T F + + +++G RHI A ++A EP V+ RELYR++A++ST+ TA+G+EEID FH +GL Y+ V D D WL+I + +
Sbjct: 534 SNRDVPTPEESPGVLAQKYT----TKEFPTVDDVMKGARHIAASKVAAEPNVRKCIRELYRQNAVLSTEATAKGREEIDEFHYCHGLQYIEKMPVLDVFEAGDL--WLKIARAE 641
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: H3GCM4_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3GCM4_PHYRM) HSP 1 Score: 79.0 bits (193), Expect = 1.150e-14 Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
+VPTP E ++A T F + + +++G RHI A ++ATEP V+ RELYR++A++ST+ T +G+EEID FH +GL Y+ V D D WL+I + +
Sbjct: 534 DVPTPEESPGVLAQKYT----TKEFPTVDDVMKGARHIAASKVATEPNVRKCIRELYRQNAVLSTEATTKGREEIDEFHFCHGLQYIEKMPVLDVFEAGDL--WLKIARAE 638
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A7J8Y780_GOSAI (YqgFc domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8Y780_GOSAI) HSP 1 Score: 74.7 bits (182), Expect = 3.370e-13 Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
E+ P E + +AS+ A +F++S+S+L+G RH+ A EI+ EP VK R +Y ++A+VST PT GK ID+FH G+ +L K + F ED QWL I+K +
Sbjct: 513 ELEDPKETPEEMASNFTCA----MFETSQSVLKGARHMAALEISCEPSVKKYVRNVYMENAVVSTSPTPDGKIAIDSFHQFAGVKWLREKPLNKF---ED-AQWLLIQKAE 615
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A7J8Y5Q6_GOSAI (S1 motif domain-containing protein (Fragment) n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8Y5Q6_GOSAI) HSP 1 Score: 74.7 bits (182), Expect = 3.470e-13 Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
E+ P E + +AS+ A +F++S+S+L+G RH+ A EI+ EP VK R +Y ++A+VST PT GK ID+FH G+ +L K + F ED QWL I+K +
Sbjct: 342 ELEDPKETPEEMASNFTCA----MFETSQSVLKGARHMAALEISCEPSVKKYVRNVYMENAVVSTSPTPDGKIAIDSFHQFAGVKWLREKPLNKF---ED-AQWLLIQKAE 444
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: B8C8T3_THAPS (SUPT6H,-like protein to suppressor of ty 6 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8T3_THAPS) HSP 1 Score: 74.7 bits (182), Expect = 3.480e-13 Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 1
Query: 121 LRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRD 309
LRG R++ A E+A EPR++ R++YR +A ++T+PTA+G + IDAFH YGLH L +K+V+D
Sbjct: 351 LRGCRYVAAMELAHEPRIRRHLRDIYRAEACITTRPTAKGLQNIDAFHEYYGLHLLRNKHVKD 413
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A484DT49_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DT49_BRELC) HSP 1 Score: 74.7 bits (182), Expect = 3.500e-13 Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
+VPTP E ++A T F + + +++G RHI A ++A EP V+ R+LYR+ A+++T+ TA+G+EEID FH +GL Y+ V + D WLRI + +
Sbjct: 537 DVPTPEESPGVLALKYT----TKEFPTVDDVMKGARHIAASKVAAEPNVRKCIRDLYRQHAVMNTEATAKGREEIDEFHYCHGLQYIEKMPVLEVFEAGDL--WLRIARAE 641
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A662WSX9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSX9_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 3.510e-13 Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
E+PTP E + A F + + +++G RHI A ++A EP V+ RELYR+ A++ST+ T +G+EEID FH +GL Y+ V + D WL+I + +
Sbjct: 570 EIPTPEEDPSVFAEKHTSTE----FPTVDDVMKGARHIAASKVAAEPNVRKCIRELYRQHAVLSTEATIKGREEIDEFHYCHGLQYIEKMPVLELFEAGD--VWLKIARAE 674 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21990.5810.1 >prot_H-paniculata_contig21990.5810.1 ID=prot_H-paniculata_contig21990.5810.1|Name=mRNA_H-paniculata_contig21990.5810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp MLGLTQAHYEVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILARback to top mRNA from alignment at H-paniculata_contig21990:2026..2967- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21990.5810.1 ID=mRNA_H-paniculata_contig21990.5810.1|Name=mRNA_H-paniculata_contig21990.5810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=942bp|location=Sequence derived from alignment at H-paniculata_contig21990:2026..2967- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21990:2026..2967- >mRNA_H-paniculata_contig21990.5810.1 ID=mRNA_H-paniculata_contig21990.5810.1|Name=mRNA_H-paniculata_contig21990.5810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig21990:2026..2967- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |