mRNA_H-paniculata_contig21990.5810.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21990.5810.1
Unique NamemRNA_H-paniculata_contig21990.5810.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 2.580e-49
Identity = 88/120 (73.33%), Postives = 102/120 (85.00%), Query Frame = 1
Query:    7 GLTQAHYEVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMS--GEDRTQWLRIEKGK 360
            G++Q ++ VPTP E V+LVASDM GA DTPLF SSESIL+GVRHILAREIA EPRVKAKCR  YR+ A+VST PTA+GKEEIDAFHPLYGLHYL+ K + +F+S  G DRTQWL+IEKGK
Sbjct:  732 GISQRYFPVPTPPEAVELVASDMKGAEDTPLFSSSESILQGVRHILAREIALEPRVKAKCRATYRRYALVSTTPTAKGKEEIDAFHPLYGLHYLDRKAISEFLSTHGSDRTQWLQIEKGK 851          
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A7S4D4S7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4S7_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 2.080e-16
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   25 YEVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMS 318
            Y  P P  P     + +A    +  F ++E + R  R +LA E+A EP ++ +CR  +R+ A VST PTA+G+ EID FHPL+GL YL  K   DF++
Sbjct:    7 YSCPRPPTPDARTVAALAQQFTSDTFPTAEDVHRAGRFMLATELAAEPFLRHRCRLAFRRHATVSTLPTAKGRAEIDFFHPLHGLQYLQRKPAEDFLN 104          
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A0W8C7C2_PHYNI (Transcription elongation factor SPT6 n=22 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C7C2_PHYNI)

HSP 1 Score: 79.7 bits (195), Expect = 6.180e-15
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
            +VPTP E   ++A        T  F + + +++G RHI A ++A EP V+   RELYR++A++ST+ TA+G+EEID FH  +GL Y+    V D     D   WL+I + +
Sbjct:  533 DVPTPDESPGVLAQKYT----TKEFPTVDDVMKGARHIAASKVAAEPNVRKCIRELYRQNAVLSTEATAKGREEIDEFHYCHGLQYIEKMPVLDVFEASDL--WLKISRAE 637          
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A6A3N3W0_9STRA (Transcription elongation factor n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3N3W0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.430e-15
Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   19 AHYEVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
            ++ +VPTP E   ++A        T  F + + +++G RHI A ++A EP V+   RELYR++A++ST+ TA+G+EEID FH  +GL Y+    V D     D   WL+I + +
Sbjct:  534 SNRDVPTPEESPGVLAQKYT----TKEFPTVDDVMKGARHIAASKVAAEPNVRKCIRELYRQNAVLSTEATAKGREEIDEFHYCHGLQYIEKMPVLDVFEAGDL--WLKIARAE 641          
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: H3GCM4_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3GCM4_PHYRM)

HSP 1 Score: 79.0 bits (193), Expect = 1.150e-14
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
            +VPTP E   ++A        T  F + + +++G RHI A ++ATEP V+   RELYR++A++ST+ T +G+EEID FH  +GL Y+    V D     D   WL+I + +
Sbjct:  534 DVPTPEESPGVLAQKYT----TKEFPTVDDVMKGARHIAASKVATEPNVRKCIRELYRQNAVLSTEATTKGREEIDEFHFCHGLQYIEKMPVLDVFEAGDL--WLKIARAE 638          
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A7J8Y780_GOSAI (YqgFc domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8Y780_GOSAI)

HSP 1 Score: 74.7 bits (182), Expect = 3.370e-13
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
            E+  P E  + +AS+   A    +F++S+S+L+G RH+ A EI+ EP VK   R +Y ++A+VST PT  GK  ID+FH   G+ +L  K +  F   ED  QWL I+K +
Sbjct:  513 ELEDPKETPEEMASNFTCA----MFETSQSVLKGARHMAALEISCEPSVKKYVRNVYMENAVVSTSPTPDGKIAIDSFHQFAGVKWLREKPLNKF---ED-AQWLLIQKAE 615          
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A7J8Y5Q6_GOSAI (S1 motif domain-containing protein (Fragment) n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8Y5Q6_GOSAI)

HSP 1 Score: 74.7 bits (182), Expect = 3.470e-13
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
            E+  P E  + +AS+   A    +F++S+S+L+G RH+ A EI+ EP VK   R +Y ++A+VST PT  GK  ID+FH   G+ +L  K +  F   ED  QWL I+K +
Sbjct:  342 ELEDPKETPEEMASNFTCA----MFETSQSVLKGARHMAALEISCEPSVKKYVRNVYMENAVVSTSPTPDGKIAIDSFHQFAGVKWLREKPLNKF---ED-AQWLLIQKAE 444          
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: B8C8T3_THAPS (SUPT6H,-like protein to suppressor of ty 6 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8T3_THAPS)

HSP 1 Score: 74.7 bits (182), Expect = 3.480e-13
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  121 LRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRD 309
            LRG R++ A E+A EPR++   R++YR +A ++T+PTA+G + IDAFH  YGLH L +K+V+D
Sbjct:  351 LRGCRYVAAMELAHEPRIRRHLRDIYRAEACITTRPTAKGLQNIDAFHEYYGLHLLRNKHVKD 413          
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A484DT49_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DT49_BRELC)

HSP 1 Score: 74.7 bits (182), Expect = 3.500e-13
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
            +VPTP E   ++A        T  F + + +++G RHI A ++A EP V+   R+LYR+ A+++T+ TA+G+EEID FH  +GL Y+    V +     D   WLRI + +
Sbjct:  537 DVPTPEESPGVLALKYT----TKEFPTVDDVMKGARHIAASKVAAEPNVRKCIRDLYRQHAVMNTEATAKGREEIDEFHYCHGLQYIEKMPVLEVFEAGDL--WLRIARAE 641          
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Match: A0A662WSX9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSX9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.510e-13
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   28 EVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAREIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKYVRDFMSGEDRTQWLRIEKGK 360
            E+PTP E   + A           F + + +++G RHI A ++A EP V+   RELYR+ A++ST+ T +G+EEID FH  +GL Y+    V +     D   WL+I + +
Sbjct:  570 EIPTPEEDPSVFAEKHTSTE----FPTVDDVMKGARHIAASKVAAEPNVRKCIRELYRQHAVLSTEATIKGREEIDEFHYCHGLQYIEKMPVLELFEAGD--VWLKIARAE 674          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21990.5810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQN4_ECTSI2.580e-4973.33GTB1 RNA binding / hydrolase, acting on ester bond... [more]
A0A7S4D4S7_HETAK2.080e-1640.82Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0W8C7C2_PHYNI6.180e-1538.74Transcription elongation factor SPT6 n=22 Tax=Phyt... [more]
A0A6A3N3W0_9STRA8.430e-1537.72Transcription elongation factor n=8 Tax=Peronospor... [more]
H3GCM4_PHYRM1.150e-1438.74Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A7J8Y780_GOSAI3.370e-1340.54YqgFc domain-containing protein n=2 Tax=Gossypium ... [more]
A0A7J8Y5Q6_GOSAI3.470e-1340.54S1 motif domain-containing protein (Fragment) n=2 ... [more]
B8C8T3_THAPS3.480e-1350.79SUPT6H,-like protein to suppressor of ty 6 n=1 Tax... [more]
A0A484DT49_BRELC3.500e-1336.94Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A662WSX9_9STRA3.510e-1336.04Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21990contigH-paniculata_contig21990:2026..2967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue4.2e-43
Seed eggNOG ortholog2880.D8LQN4
KEGG koko:K11292
Hectar predicted targeting categoryother localisation
EggNOG free text desc.obsolete transcription factor activity, core RNA polymerase II binding
EggNOG OGsCOG2183@1,KOG1856@2759
Ec32 ortholog descriptionSPT6 transcription elongation factor
Ec32 orthologEc-10_006340.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko03036
Exons2
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.9107447-CDS-H-paniculata_contig21990:2025..22031622929601.9107447-CDS-H-paniculata_contig21990:2025..2203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21990 2026..2203 -
1691480931.184575-CDS-H-paniculata_contig21990:2025..22031691480931.184575-CDS-H-paniculata_contig21990:2025..2203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21990 2026..2203 -
1622929601.9254112-CDS-H-paniculata_contig21990:2785..29671622929601.9254112-CDS-H-paniculata_contig21990:2785..2967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21990 2786..2967 -
1691480931.1957755-CDS-H-paniculata_contig21990:2785..29671691480931.1957755-CDS-H-paniculata_contig21990:2785..2967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21990 2786..2967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21990.5810.1prot_H-paniculata_contig21990.5810.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21990 2026..2967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21990.5810.1

>prot_H-paniculata_contig21990.5810.1 ID=prot_H-paniculata_contig21990.5810.1|Name=mRNA_H-paniculata_contig21990.5810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MLGLTQAHYEVPTPAEPVDLVASDMAGAADTPLFDSSESILRGVRHILAR
EIATEPRVKAKCRELYRKDAMVSTQPTARGKEEIDAFHPLYGLHYLNHKY
VRDFMSGEDRTQWLRIEKGK
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mRNA from alignment at H-paniculata_contig21990:2026..2967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21990.5810.1 ID=mRNA_H-paniculata_contig21990.5810.1|Name=mRNA_H-paniculata_contig21990.5810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=942bp|location=Sequence derived from alignment at H-paniculata_contig21990:2026..2967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGGTTTGACCCAGGCGCACTATGAGGTACCGACGCCAGCCGAGCC CGTGGATCTCGTGGCATCCGACATGGCTGGTGCAGCCGATACACCCTTGT TTGACTCTTCGGAGTCTATCTTGAGAGGCGTGCGGCACATCTTGGCGAGG GAGATTGCCACAGAGCCGAGGGTCAAGGCGAAGTGAGTTTTTTTTTTTTC CTCGCAATCTCGAGTCCTGTGTATGATATTTGTCATTTGATAATTTTATA CAGGAGTGATGCTCCTTATTAAGTAGATGCAGTGGTCGTGATCCATACGC TGTCTCTCTTTCAAGCTGTGCTATTGGTCCAGGTACGTGTTTGCTGATAA AAATGTATGTAACTAAAGTTTTAAAGTCAGCTTCATAGCCTCGAGATGGG TTCAGTTTTTGTGTGGGCTTCAGAGTCTTGTGTTAAGCGAACTGTGGCAG GGTTGAATTACGAATGAAAATTCCAATTAGTGAAATGGAGTTTTTTTGTA TTTTTTTGCCAGTCGTTATTGTAATATCACCTCATATGACAAATGCTTTC ATGTATTACGTACAGTTCACAAGCGAATGGCACAGGTATACTCTCTCTTG TGAAGATTCCCCTTTACCGATCTAATTGAAGCCACGCCTCCCCCCCCCTA ACCCTCTGTACCGTACCCACCTCCACCATTCTCCGCGCCTGACGGTTAAT CTGTCTCTCGCTGATGAATGAATGGGCAAACTGGTTGCTGATCTGATCTG ATCTGATCTACTAGGTGTAGGGAGTTGTACCGGAAGGATGCGATGGTCTC CACCCAACCCACGGCGAGAGGAAAGGAGGAGATCGATGCGTTCCACCCTC TGTATGGCTTGCACTACCTCAACCACAAGTATGTTCGCGACTTCATGTCG GGCGAGGACCGCACGCAATGGTTGAGGATCGAGAAGGGCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21990:2026..2967-

>mRNA_H-paniculata_contig21990.5810.1 ID=mRNA_H-paniculata_contig21990.5810.1|Name=mRNA_H-paniculata_contig21990.5810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig21990:2026..2967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGGTTTGACCCAGGCGCACTATGAGGTACCGACGCCAGCCGAGCC
CGTGGATCTCGTGGCATCCGACATGGCTGGTGCAGCCGATACACCCTTGT
TTGACTCTTCGGAGTCTATCTTGAGAGGCGTGCGGCACATCTTGGCGAGG
GAGATTGCCACAGAGCCGAGGGTCAAGGCGAAATGTTAGGTTTGACCCAG
GCGCACTATGAGGTACCGACGCCAGCCGAGCCCGTGGATCTCGTGGCATC
CGACATGGCTGGTGCAGCCGATACACCCTTGTTTGACTCTTCGGAGTCTA
TCTTGAGAGGCGTGCGGCACATCTTGGCGAGGGAGATTGCCACAGAGCCG
AGGGTCAAGGCGAAGTGTAGGGAGTTGTACCGGAAGGATGCGATGGTCTC
CACCCAACCCACGGCGAGAGGAAAGGAGGAGATCGATGCGTTCCACCCTC
TGTATGGCTTGCACTACCTCAACCACAAGTATGTTCGCGACTTCATGTCG
GGCGAGGACCGCACGCAATGGTTGAGGATCGAGAAGGGCAAGGTGTAGGG
AGTTGTACCGGAAGGATGCGATGGTCTCCACCCAACCCACGGCGAGAGGA
AAGGAGGAGATCGATGCGTTCCACCCTCTGTATGGCTTGCACTACCTCAA
CCACAAGTATGTTCGCGACTTCATGTCGGGCGAGGACCGCACGCAATGGT
TGAGGATCGAGAAGGGCAAG
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