mRNA_H-paniculata_contig2197.5805.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2197.5805.1
Unique NamemRNA_H-paniculata_contig2197.5805.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: D8LTH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH2_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 4.100e-71
Identity = 127/212 (59.91%), Postives = 154/212 (72.64%), Query Frame = 1 
Query:  292 YEELLASRPLATKAITSGIIAGAGDLTCQVLAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMP--AAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSYQSNKAVTTVKDGE 921
            Y  LL SRPLATKA+TSG IA AGD++CQ+LA   A      + +E +   Q+ +EL +H       A  +A+EIDWGR  RFT +GAA +AP LH WYGFL + +PG A +TVVKRVA+DQL+F+P FL  FLST+ML+DG AAKI  KL+ADY  TLV NWGYWIPAQ+INFRFV  +YQVL +N  GF WNIYLSYQSNKAV  +KD E
Sbjct:    2 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVA------KREEEKSSAQDVDELEHHEPFGDGGARSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTLVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAV--LKDME 205
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BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: A0A6H5JL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL95_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 2.830e-70
Identity = 133/235 (56.60%), Postives = 159/235 (67.66%), Query Frame = 1 
Query:  217 VPPQQPRPRKPSTTKNSESLGLLGRYEELLASRPLATKAITSGIIAGAGDLTCQVLAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMPAAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSYQSNKAVTTVKDGE 921
            VP Q P    P  TK + +  +   Y  LL SRPLATKA+TSG IA AGD++CQ+LA   A      E +       +D E         A  +A+EIDWGR  RFT +GAA +AP LH WYGFL R +PG A +TVVKRVA+DQL+F+PVFL  FLST+ML+DG AAKI  KL+ADY  T+V NWGYWIPAQ+INFRFV  +YQVL +N  GF WNIYLSYQSNKAV  +KD E
Sbjct:   49 VPAQPPPTGAPKPTKPTRA-SIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVA----KREEEHSSAQHVDDHEQHEPFGDGGATSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPVFLAVFLSTVMLLDGNAAKIDRKLRADYPTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAV--LKDME 276
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BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: A0A835YNC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC4_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.830e-49
Identity = 100/227 (44.05%), Postives = 131/227 (57.71%), Query Frame = 1 
Query:  265 SESLGLLGRYEELLASRPLATKAITSGIIAGAGDLTCQV-----LAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMPAAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSYQSNKAVTTVKDGETKP 930
            S S+ ++  Y  LL + P+ATKA+TS  IAG GD+ CQ+     LAA  A    + E+    G        G+ SQ          +DW R ARF LL  A  AP  H WYG LGR +PG+ L    KR+A+DQ VFSPVF+  F S +M+++G+AA+I  KL+ DY  TLV NW  W+PAQL NFR VP  YQV  +N  G  WN YLS+QS K + +    + +P
Sbjct:   42 SRSINIIQSYSRLLETNPIATKALTSAAIAGMGDIGCQIYTNRGLAAAAAG---AGEAGSNAGAADGAATWGSTSQQ-------RHLDWTRCARFMLLSGALFAPAAHAWYGLLGRLLPGQTLMVATKRMALDQFVFSPVFVGVFFSALMVLEGEAARIPDKLRQDYWTTLVSNWTLWMPAQLANFRLVPLQYQVGAANCVGLFWNAYLSFQSFKKIKSAPQSQPEP 258
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BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: A0A835YKC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC9_9STRA)

HSP 1 Score: 173 bits (439), Expect = 3.240e-46
Identity = 104/238 (43.70%), Postives = 134/238 (56.30%), Query Frame = 1 
Query:  262 NSESLGLLGRYEELLASRPLATKAITSGIIAGAGDLTCQVLAAHFAVDYLSVESDEVR--------GVEQ------EDEELGNHSQMPAAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGK-ALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSYQSNKAVTTVKDGETKP 930
            +S S  LL RY  LLASRPL TK +T+ IIAG GD+ CQ+  AH A +  +   ++V         GV         +  +    Q    W     +D  R  +F LL AA  AP  HYWY  L + + G  A+   VKR+A+DQ +F+PVF+  F S +M+V+G+AAKI  KL+ DY  TLV NWG W+PAQLINFR VP  YQVL +NG GF WN  +S Q  K      D E +P
Sbjct:   18 SSSSRSLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWW---GAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETL---DDEEQP 249
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BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: A0A484DWD7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWD7_BRELC)

HSP 1 Score: 159 bits (402), Expect = 4.820e-42
Identity = 86/212 (40.57%), Postives = 114/212 (53.77%), Query Frame = 1 
Query:  292 YEELLASRPLATKAITSGIIAGAGDLTCQVLAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMPAAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSYQSNKAVTTVKDGETK 927
            Y  LL + PL+TK +T G IAG GD+ CQVL      D                                A+ D  R A FT LG   ++P LH WYGFLG  +PG + +T+ KR+ +DQ++F+PVFL  FLS++  ++G A  I  KL+AD+      NW  W+PAQ+INFRFVP+  QVL SN  G VWN YLS+ S+  +      E K
Sbjct:   45 YASLLVTHPLSTKIVTGGTIAGLGDIGCQVLLEGERKD--------------------------------AKFDLKRTAIFTFLGGVAVSPILHVWYGFLGSRLPGISKATITKRLVLDQIIFAPVFLSIFLSSVQALEGHADDIQDKLRADWWPLTKANWVIWVPAQIINFRFVPATMQVLFSNVMGLVWNSYLSFVSHSEIPKTLFSEDK 224
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BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: A0A225WCL6_9STRA (Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WCL6_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.970e-42
Identity = 89/217 (41.01%), Postives = 119/217 (54.84%), Query Frame = 1 
Query:  250 STTKNSESLGLLGRYEELLASRPLATKAITSGIIAGAGDLTCQVLAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMPAAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSYQSNKAV 900
            S+TK + +  +   Y  LL + PL+TK  T G IAG GD+ CQ+L          +E D+                           D  R A FT+LG   I+P LH WYGFLG  + G A S V+KR+A+DQL F+P+FL  FLS+++ ++G A  I  KL+ D+      NWG W+PAQ++NFRFVP   QVL SN  G +WN YLSY S+  V
Sbjct:    4 SSTKPTTARRVWDSYASLLGTHPLSTKIATGGAIAGLGDVGCQLL----------LEGDK-------------------------RFDGKRTAIFTILGGFLISPVLHVWYGFLGSRVSGVATSAVMKRLALDQLGFAPIFLPVFLSSVLTLEGHAYDIPDKLRVDWWSVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHSTV 185
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BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: A0A662Y1B5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1B5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 7.760e-42
Identity = 89/215 (41.40%), Postives = 120/215 (55.81%), Query Frame = 1 
Query:  250 STTKNSESLGLLGR----YEELLASRPLATKAITSGIIAGAGDLTCQVLAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMPAAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSY 882
            S +  S S G + R    Y  LL + PL+TK +T G IAGAGD++CQ          L +E+D+                         + D  R A FT LG A I+P LH WYGFLG+ +PG +   +VKR+A+DQLVF+P FL  F S+++ ++G   ++  KL+AD+      NW  W+PAQ+INFRFVP   QVL +N  G VWN YLSY
Sbjct:   24 SFSSTSSSKGFVRRSWESYATLLETHPLSTKIVTGGAIAGAGDVSCQ----------LFIEADD-----------------------NGKFDVKRAAIFTFLGGALISPVLHVWYGFLGKLVPGVSSRAIVKRLALDQLVFAPTFLCVFFSSLLTLEGHLDQLPEKLRADWWPATKANWAVWVPAQIINFRFVPGSLQVLFANVVGLVWNSYLSY 205
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BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: D0MT87_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT87_PHYIT)

HSP 1 Score: 156 bits (394), Expect = 7.320e-41
Identity = 91/227 (40.09%), Postives = 122/227 (53.74%), Query Frame = 1 
Query:  250 STTKNSESLG---LLGRYEELLASRPLATKAITSGIIAGAGDLTCQVLAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMPAAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSYQSNKAVTTVKDGE 921
            ST+  SES G   +   Y  LL + PL TK +T G IAG GD+ CQ++                  +E ED +              A++D  R   FT LG   I+P LH WYGFLG  +PG + S V KR+A+DQL F+P FL   LS+++ ++G A  I  KL+AD+   +  NW  W+PAQ++NFRFVP   QV+ SN  G +WN YLSY S+  V      E
Sbjct:   28 STSSTSESSGFRRIWDTYASLLETHPLKTKIVTGGAIAGLGDVGCQLV------------------LEGEDGD--------------AKLDVKRTVIFTFLGGLLISPVLHVWYGFLGSRLPGVSTSAVAKRLALDQLGFAPTFLPIILSSVLTLEGHAEDIPDKLRADWWPLMKANWVVWVPAQILNFRFVPGSMQVIFSNVVGLLWNSYLSYVSHSQVPKALPAE 222
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BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: A0A6A3NKH9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NKH9_9STRA)

HSP 1 Score: 155 bits (393), Expect = 8.120e-41
Identity = 87/213 (40.85%), Postives = 117/213 (54.93%), Query Frame = 1 
Query:  292 YEELLASRPLATKAITSGIIAGAGDLTCQVLAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMPAAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSYQSNKAVTT---VKDGE 921
            Y  LL + PL+TK  T G IAG GD+ CQ++                       EE   H  +         +D  R A FT LG   I+P LH WYGFLG  +PG + + V KR+A+DQL F+P FL  FLS+++ ++G   +I  KL+AD+      NWG W+PAQ++NFRFVP   QVL SN  G +WN YLSY S+  V     ++DG+
Sbjct:   40 YTSLLETHPLSTKIATGGAIAGLGDMGCQLVL----------------------EEKEKHKPL---------LDVKRAAIFTFLGGFLISPVLHVWYGFLGSRLPGVSAAAVAKRLALDQLGFAPTFLPVFLSSVLTLEGNKEQIPDKLRADWWTVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHADVPAKGLLEDGD 221
[Close]
BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Match: A0A4Q2YFM0_9BACT (Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2YFM0_9BACT)

HSP 1 Score: 155 bits (392), Expect = 1.070e-40
Identity = 92/230 (40.00%), Postives = 125/230 (54.35%), Query Frame = 1 
Query:  241 RKPSTTKNSESLGLLGRYEELLASRPLATKAITSGIIAGAGDLTCQVLAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMPAAWVLAAEIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQLVFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLINFRFVPSMYQVLCSNGFGFVWNIYLSYQS-NKAVTTVKDGETK 927
            R+P +++   S  L  +Y +LL + PL TK IT+G IA   D+TCQV          S  SDE                  A   L   +DW R   FT++      P  HYWYGFL   I G      +KRV +DQ++F+PV L SF S ++LV+G++ +I  KL+ D   T++ N+  WIPAQLINF+FVP  Y+VL +N  GF WNIYLSY + N   ++  D E K
Sbjct:   19 RRPFSSRPDTS-SLWQQYNKLLETHPLMTKCITAGAIAAVADVTCQV----------SFPSDE-----------------DANKSLLERMDWKRTRNFTIVNTFLFPPLAHYWYGFLSVKIVGTTFMAAIKRVVLDQMLFAPVLLASFFSAVLLVNGESDRIPDKLRNDLPTTILTNYTVWIPAQLINFQFVPIPYRVLWANAVGFFWNIYLSYAAVNGTSSSAGDTEKK 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2197.5805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTH2_ECTSI4.100e-7159.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL95_9PHAE2.830e-7056.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNC4_9STRA2.830e-4944.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKC9_9STRA3.240e-4643.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A484DWD7_BRELC4.820e-4240.57Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A225WCL6_9STRA4.970e-4241.01Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID... [more]
A0A662Y1B5_9STRA7.760e-4241.40Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
D0MT87_PHYIT7.320e-4140.09Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A6A3NKH9_9STRA8.120e-4140.85Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A4Q2YFM0_9BACT1.070e-4040.00Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2197contigH-paniculata_contig2197:11549..15739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.3
Seed ortholog evalue9.3e-60
Seed eggNOG ortholog2880.D8LTH2
KEGG koko:K01301,ko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-02_005610.1
EC3.4.17.21
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons5
Model size1517
Cds size879
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929600.4475524-UTR-H-paniculata_contig2197:11548..121321622929600.4475524-UTR-H-paniculata_contig2197:11548..12132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2197 11549..12132 -
1691480930.834976-UTR-H-paniculata_contig2197:11548..121321691480930.834976-UTR-H-paniculata_contig2197:11548..12132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2197 11549..12132 -
1622929600.7829173-UTR-H-paniculata_contig2197:15685..157391622929600.7829173-UTR-H-paniculata_contig2197:15685..15739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2197 15686..15739 -
1691480930.89632-UTR-H-paniculata_contig2197:15685..157391691480930.89632-UTR-H-paniculata_contig2197:15685..15739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2197 15686..15739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929600.465704-CDS-H-paniculata_contig2197:12132..122341622929600.465704-CDS-H-paniculata_contig2197:12132..12234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 12133..12234 -
1691480930.8472176-CDS-H-paniculata_contig2197:12132..122341691480930.8472176-CDS-H-paniculata_contig2197:12132..12234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 12133..12234 -
1622929600.4832377-CDS-H-paniculata_contig2197:12421..125291622929600.4832377-CDS-H-paniculata_contig2197:12421..12529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 12422..12529 -
1691480930.8572485-CDS-H-paniculata_contig2197:12421..125291691480930.8572485-CDS-H-paniculata_contig2197:12421..12529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 12422..12529 -
1622929600.7390623-CDS-H-paniculata_contig2197:13095..134661622929600.7390623-CDS-H-paniculata_contig2197:13095..13466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 13096..13466 -
1691480930.866251-CDS-H-paniculata_contig2197:13095..134661691480930.866251-CDS-H-paniculata_contig2197:13095..13466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 13096..13466 -
1622929600.7564368-CDS-H-paniculata_contig2197:14762..149931622929600.7564368-CDS-H-paniculata_contig2197:14762..14993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 14763..14993 -
1691480930.875932-CDS-H-paniculata_contig2197:14762..149931691480930.875932-CDS-H-paniculata_contig2197:14762..14993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 14763..14993 -
1622929600.770152-CDS-H-paniculata_contig2197:15618..156851622929600.770152-CDS-H-paniculata_contig2197:15618..15685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 15619..15685 -
1691480930.888294-CDS-H-paniculata_contig2197:15618..156851691480930.888294-CDS-H-paniculata_contig2197:15618..15685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2197 15619..15685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2197.5805.1prot_H-paniculata_contig2197.5805.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2197 12133..15685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2197.5805.1

>prot_H-paniculata_contig2197.5805.1 ID=prot_H-paniculata_contig2197.5805.1|Name=mRNA_H-paniculata_contig2197.5805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=293bp
MSELTVLAVGMRRAVALSSPQIAISRLGQPLLRTTKTKIPTPARPRQCSS
DQQQVPPQQPRPRKPSTTKNSESLGLLGRYEELLASRPLATKAITSGIIA
GAGDLTCQVLAAHFAVDYLSVESDEVRGVEQEDEELGNHSQMPAAWVLAA
EIDWGRYARFTLLGAAFIAPCLHYWYGFLGRAIPGKALSTVVKRVAVDQL
VFSPVFLMSFLSTIMLVDGQAAKIVPKLQADYVQTLVGNWGYWIPAQLIN
FRFVPSMYQVLCSNGFGFVWNIYLSYQSNKAVTTVKDGETKP*
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mRNA from alignment at H-paniculata_contig2197:11549..15739-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2197.5805.1 ID=mRNA_H-paniculata_contig2197.5805.1|Name=mRNA_H-paniculata_contig2197.5805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4191bp|location=Sequence derived from alignment at H-paniculata_contig2197:11549..15739- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCAGAGCCGTGGTCAGATAATAGTTCGAAGCAGCCACACAGCATTCAC
TGCGATGTCTGAGTTGACCGTGCTGGCTGTCGGGATGAGGAGAGCTGTTG
CTTTGTCTTCGCCTCAAATTGGTGAGACCTAAAGCGAGCTAGAGAGATAG
ATGTGCCAGGTGGTGCCTTGCCTTTGTAATTCAATTGTGCAACACCTTGT
CGCAGATACACACCTGCACCGAACGTGAATGTATTCAGCACATCCAGACG
AGCTCGCACAGACAGTAACGATAGTGGAGTGCCACTGGCGATTAGGATCG
TGGATTTGAATCTGCAGCACGTGGAAAATTAGATTTGTGTCGTAACTATT
TTACCCGTGAAGCCTCTCAACAGATAATGTATGGAAAAGCAGCGATATGT
GCTGCGACAACCATGCATACGCGAGTATCCCTTGTCAGGTTCCGTTGCTC
TTTAAAGATCAAGGCCAGACACAGATATCACATACACACACCGTCTGTGT
GACCTGGACCTTGACGTTACCGACGCGCACCCAGCATCTTAAGTCTTACT
CACTGCACTACGTCCATGTTGTGTTGATGTAATCAAACGCATATTGATAA
GACAGTCCAGTAATATCACATATATCGTATGAGCTTGGGTCTGAAACTGT
CGTTATTCGCGATGGCGTTGATTACTCACACCATTGACGACGGCGCAACT
GACGAAACCAACTCAAATCTACCTGCTCTCCTGTCAAATCCATCAGCGAT
AAGTCGACTAGGCCAACCGCTTCTACGAACAACGAAAACGAAAATTCCAA
CGCCCGCGAGGCCGCGACAATGCAGTAGTGACCAGCAGCAGGTGCCGCCG
CAGCAGCCCCGTCCGCGAAAGCCTTCGACAACCAAGAACTCTGAGTCCTT
GGGATTACTAGGGCGTTACGAGGAGCTTTTGGCGTCCCGACCATTAGCGA
CAAAGGCGATCACTTCAGGAATTATCGGTAAGGGAGGTGTTGGCTCATGT
TTTTATATCTTCAGAGTCTTTGGAAATTTGCAATCCAGCCGATGTTGGTG
AGGACGCCAAGCTTCAGCGGACCTCCGATGTTCCGTATGGTGTACACTAG
TTACGATCTCGCTGGGGTTTTTTTGTTTTGTTTTTTTCGGTCCCCGGGAG
ACCAGGAAGGAACTCCTGCTTTGCACGTATACAATAATGAAGTTGCTTTC
GTGCGGCGCTTTGCCGGTTTCCCGGTGCGCCTCGCTTTCACCTCGTTTCG
ATCCCTATTTGGAATGTCATCACAACGGTTTCCGCGGGCGGGTAGGCACC
TAGGTAAGCTCTACTCCGTTCTTACCCAGATAGTCTCGGATTTAAACCGA
GTAAACCTCCTGCAAACACTCCCAGCTCGACTCTGTACACGAGTCACCCT
ACCCATCCGGGCGTCGGTCCTCAATCTCGCTGGGGTTCTGTCACTCTGCT
GTCGAGTCGGACGAGTCAGTTCATGTCCTGGACGAGCCGCACGTGTCCGT
TCGAGAGCACCTTGCAGTGAAAGTACAATTTGAGACATGTATACCGTACA
CTATTTGGCGGTGGTTATTTTTCTCTTTTTTGTCATTAGATATCATATTC
GTGGGATACGGAACGACGCAATTTAGATAAATGGCTCAGACTGGCTCCAG
GGGCACAAATATGCGACTTAACCACGCAAGGGTCTTTTCGGCACTTTTCG
GTTCCATAACAGCACTGTTTCTTTGTAGCCTGTTGGTACCTGTTTAAAGT
TGTTGGGCACTCCCGCAAGAGTATGTTATTTACCTGTCATGTGACTTCGT
TGGACCAGCATTTGACTTTGACATGCTCATACTATCATTAGAGAAGAACC
CAATGTTGAGCGCTGCAATGAAAACCGATGAACGGGAACAGTTGTCATCT
TCGCATCCGCCGGTCTGAATACTCGACATCCCGCCGCCAACGACATGCTT
CCACAAAACAAGTAGGTAGACGGCAAGAGCAGGGCAGTGGCGTATGCCCG
TTTGACGGCTTTACGGTGGAAACCGCGCAGTGATCAGGACAACTCTATAT
TCCCTCTACGATGCTTTCCAAATTTGCCCATGTGACACGTCGCCATCTAT
ATTTTTCTGCCTGCAGCATTCACCGATCCCCAAGACAACGTTGCAAAATA
GTCGGTGTGGACACCAGTGCACATTGCGTGCTTAAGCAAGGCTCGCATAC
CGAACTACGATCACGCCGTCCACGTTGTTCACCCTGTGTCTTCGTTATAT
GGTGCATGCATTACTCTGCGCAGCTGGGGCGGGAGACCTAACCTGCCAAG
TATTAGCCGCGCATTTCGCGGTGGATTATTTATCTGTAGAGAGTGACGAA
GTGCGAGGAGTCGAACAAGAGGATGAGGAGTTAGGCAATCACAGCCAAAT
GCCAGCAGCATGGGTTCTCGCTGCGGAAATCGATTGGGGACGTTATGCGA
GGTTCACGCTGCTCGGCGCAGCTTTCATAGCGCCATGTTTGCATTATTGG
TATGGGTTTCTGGGGCGAGCAATCCCGGGCAAGGCGCTATCGACTGTGGT
GAAAAGGGTGGCTGTTGACCAGCTGGTGTTCTCTCCCGTGTTCTTGATGT
CATTTTTGTCCACCATCATGCTCGTGGATGGCCAGGCCGCTAAGGTTTGT
TGTGTGTGTCGTTCGTTTCGATACCCTGCATGACTCACGGGCGTACACCT
AGTAGAGCACTTTTACATTATTTAGGCGAGCAATTTGTTTTTGTTTGGCC
CTGTATTGAGCTAGCGGTTGCTGTGTGATAGAGCTTTGGAATTTATTTTG
CTTTCGAGAACGCCAGCGAACCTTCAGCAACTGTGTTGAGATTTATGTTT
TACCTCGCGATGTTGCCGAAGAGGTGCCATCGATGAGCGGACCATATCGT
GGCAACAGTTTGGAGAGTTTTGGAAGAATTGATGAAATCGGGAAGACGTT
CGCCAGGACATAAGATCACGATGCTGTCGATGATCAACCAGCAAAGACAC
CGACCAATCACCGATCCTTGGCTGGCCGTTGGCTTTTACTCGAAGGTCGT
AGCAGTTATCATTCCGCTCACAGGGTACGCTTTCGAGAAACTTGATATAT
TCATGTAGTTTGTCATGCGTGGGGTACTGCCGTGGTAGCGGCATCCTAAG
GTATGTCTTCTTCTAATGCCCGTTGTGCTTGTGCCTCACTGTCTTACTCT
CTACAAATAGATCGTGCCGAAACTTCAAGCGGATTACGTGCAGACTCTAG
TGGGGAACTGGGGATACTGGATCCCTGCACAACTCATCAACTTCCGCTTT
GTACCTTCCATGTATCAGGTGCGAAAATCGCAAAAATATTTTAGATTGAT
TGGTAATTTTCGTCTCTATTCCATGGTTCAGATGCTGCCCTATTGGGGTG
GTAGTTTGGGTGATAACCCACCATAAAGGTTCTCGATTATACCCTTAACA
ATCTCCCACTCTTATGTCCTTGCTGTCTGTCGCTGTTCTTTGGTTCTGTT
GAAAGGTGCTATGCTCGAATGGCTTCGGGTTCGTGTGGAACATTTACCTG
TCCTATCAATCCAACAAGGCTGTCACAACCGTGAAGGATGGAGAGACGAA
ACCATGAAAACAGGCTACGTAACACGAATCATGAATACATGTCATACTCA
AATCACTATCCCAGCAACATGGTCCTCTGCTGGCGCATACGTAAGACGTC
GAAAGTTGGCTTTGTTTAGCAGGGGAGCATTTGGTACTTGGAAACTGAAA
AGCGTGTTACGTTATGGGCTCCTGGGAGGTAATATCCAGCCGCTGGAATA
GCTGGAACAATCGACCAGCAATCATTTCCCTGTACCACGTCACAGGGAGC
AATGAGTCTATGAGACAAGCCTGCGTGCGGTGCTATTCATGGAAGCACAT
ATGCATAACTGTGGTAGTGCGCATGGATTCAGGGGTCAGCATGGTGTATT
TCATATGTCCCTTGCGGAAGGAATCATGATACACCGTACTCATGTCCCTC
GTTGTGAATGAGAGAGGGGTGTCCATGTTCGATCGCTCTATTCGTTGCAT
GTGTTCCTCCAAGTTGTTAGATATGTAGATATCCTTGTGGCTTGTGACAC
AGTAGTGCAGACATTGAAGTTTACTTGTTCTATATTATGATGCGCAGACG
AGAGTGAGACGAAGGGGGTCGGTGCACCTCACATGTCGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2197:11549..15739-

>mRNA_H-paniculata_contig2197.5805.1 ID=mRNA_H-paniculata_contig2197.5805.1|Name=mRNA_H-paniculata_contig2197.5805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig2197:11549..15739- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGAGTTGACCGTGCTGGCTGTCGGGATGAGGAGAGCTGTTGCTTT
GTCTTCGCCTCAAATTGATGTCTGAGTTGACCGTGCTGGCTGTCGGGATG
AGGAGAGCTGTTGCTTTGTCTTCGCCTCAAATTGCGATAAGTCGACTAGG
CCAACCGCTTCTACGAACAACGAAAACGAAAATTCCAACGCCCGCGAGGC
CGCGACAATGCAGTAGTGACCAGCAGCAGGTGCCGCCGCAGCAGCCCCGT
CCGCGAAAGCCTTCGACAACCAAGAACTCTGAGTCCTTGGGATTACTAGG
GCGTTACGAGGAGCTTTTGGCGTCCCGACCATTAGCGACAAAGGCGATCA
CTTCAGGAATTATCGCGATAAGTCGACTAGGCCAACCGCTTCTACGAACA
ACGAAAACGAAAATTCCAACGCCCGCGAGGCCGCGACAATGCAGTAGTGA
CCAGCAGCAGGTGCCGCCGCAGCAGCCCCGTCCGCGAAAGCCTTCGACAA
CCAAGAACTCTGAGTCCTTGGGATTACTAGGGCGTTACGAGGAGCTTTTG
GCGTCCCGACCATTAGCGACAAAGGCGATCACTTCAGGAATTATCGCTGG
GGCGGGAGACCTAACCTGCCAAGTATTAGCCGCGCATTTCGCGGTGGATT
ATTTATCTGTAGAGAGTGACGAAGTGCGAGGAGTCGAACAAGAGGATGAG
GAGTTAGGCAATCACAGCCAAATGCCAGCAGCATGGGTTCTCGCTGCGGA
AATCGATTGGGGACGTTATGCGAGGTTCACGCTGCTCGGCGCAGCTTTCA
TAGCGCCATGTTTGCATTATTGGTATGGGTTTCTGGGGCGAGCAATCCCG
GGCAAGGCGCTATCGACTGTGGTGAAAAGGGTGGCTGTTGACCAGCTGGT
GTTCTCTCCCGTGTTCTTGATGTCATTTTTGTCCACCATCATGCTCGTGG
ATGGCCAGGCCGCTAAGCTGGGGCGGGAGACCTAACCTGCCAAGTATTAG
CCGCGCATTTCGCGGTGGATTATTTATCTGTAGAGAGTGACGAAGTGCGA
GGAGTCGAACAAGAGGATGAGGAGTTAGGCAATCACAGCCAAATGCCAGC
AGCATGGGTTCTCGCTGCGGAAATCGATTGGGGACGTTATGCGAGGTTCA
CGCTGCTCGGCGCAGCTTTCATAGCGCCATGTTTGCATTATTGGTATGGG
TTTCTGGGGCGAGCAATCCCGGGCAAGGCGCTATCGACTGTGGTGAAAAG
GGTGGCTGTTGACCAGCTGGTGTTCTCTCCCGTGTTCTTGATGTCATTTT
TGTCCACCATCATGCTCGTGGATGGCCAGGCCGCTAAGATCGTGCCGAAA
CTTCAAGCGGATTACGTGCAGACTCTAGTGGGGAACTGGGGATACTGGAT
CCCTGCACAACTCATCAACTTCCGCTTTGTACCTTCCATGTATCAGATCG
TGCCGAAACTTCAAGCGGATTACGTGCAGACTCTAGTGGGGAACTGGGGA
TACTGGATCCCTGCACAACTCATCAACTTCCGCTTTGTACCTTCCATGTA
TCAGGTGCTATGCTCGAATGGCTTCGGGTTCGTGTGGAACATTTACCTGT
CCTATCAATCCAACAAGGCTGTCACAACCGTGAAGGATGGAGAGACGAAA
CCATGAGTGCTATGCTCGAATGGCTTCGGGTTCGTGTGGAACATTTACCT
GTCCTATCAATCCAACAAGGCTGTCACAACCGTGAAGGATGGAGAGACGA
AACCATGA
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