mRNA_H-paniculata_contig21956.5799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.860e-31 Identity = 69/147 (46.94%), Postives = 89/147 (60.54%), Query Frame = 1
Query: 1 WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADIRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
W L+ +DG+TKEARR C KL T M+SG+DP DFL MD R RLE+M + IPDE YED++LRAL EY +R S + R F L +IR + MY D LSR ++ VAGRGVAM A +++ C C + GH +C
Sbjct: 64 WKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAES-------SNVQCRNCQEFGHYANEC 203
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.600e-11 Identity = 49/150 (32.67%), Postives = 73/150 (48.67%), Query Frame = 1
Query: 1 WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADIRHMVST---MYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
W A ++D T+EARR CH++L R +G+DP DF + RL + + + Y DI+L L E I RD N+A + + +T ++ D SR + +V+GRG AM A+ SD C C + G +RDC
Sbjct: 116 WRAQHERFDAQTQEARRACHNELFNLRHLAGNDPIDFFTKGWDLKLRLMVLGEEVSSPVYLDIMLSGLTKAPEFTFIREMHYRD-NIASVDSLQATANRIFVDQQSRNASGPMVSGRGAAMAAASSSD-------QCHRCKEYGPFQRDC 257
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.660e-10 Identity = 45/149 (30.20%), Postives = 71/149 (47.65%), Query Frame = 1
Query: 1 WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAE--YERVRIASCEKRDFNLADIRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
W AL ++D T+EARR CH++L R +G DP DF + RL+ + + + D Y DI+L L +E +R ++ ++ + + D SR + +V+GRG AM + +D C C GH +RDC
Sbjct: 96 WRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDLVYLDIMLSGLTKAPVFEFIREMHYRDNFTSVDSLQATANCFFVDQHSRNASGPVVSGRGAAMAVASDTD-------QCRRCKAYGHFQRDC 237
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 2.750e-10 Identity = 39/130 (30.00%), Postives = 67/130 (51.54%), Query Frame = 1
Query: 61 DKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADIRHMVSTMY---TDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
+KL T M+ G +P+D+ R ++E+M + I D ++D+ + EY+ V++ +FN + HM +TM+ D SR + +AGRG M + TCF CG++GH++R+C
Sbjct: 2 EKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFN---VNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQ------ETCFGCGEKGHIRRNC 122
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.020e-9 Identity = 42/144 (29.17%), Postives = 69/144 (47.92%), Query Frame = 1
Query: 10 LQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADIRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
L Y+ T E R ++L T M+ +P+D+ R + E+M + I D + D + EY+ V++ DFN+ ++ + M+ D SR +AGRG AM A+ + TCF CG++GH+ R+C
Sbjct: 100 LNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEE------PTCFDCGEKGHIWRNC 237
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: UPI000DEC40E4 (LOW QUALITY PROTEIN: uncharacterized protein LOC112703916 n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI000DEC40E4) HSP 1 Score: 52.4 bits (124), Expect = 4.390e-5 Identity = 36/148 (24.32%), Postives = 62/148 (41.89%), Query Frame = 1
Query: 1 WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVR-IASCEKRDFNLADIRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
W L+ + R D+ H RM D L ++G LE +E I DE ++ +LP+ YE ++ + K N ++ S + + N + + + ++ G R +TC+ CGK GH+KR+C
Sbjct: 39 WDKLERLHQAKGISNRLLLKDQFHNLRMDHNVKISDHLSAINGIISELEAIEVKIDDEDKALWLILSLPSSYEYIKPVLMYGKETLNFEEV---ASKLIAEERRMKNEGSTSSDLALVARSDNYGKGNRGRSVTCWKCGKSGHVKRNC 183 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21956.5799.1 >prot_H-paniculata_contig21956.5799.1 ID=prot_H-paniculata_contig21956.5799.1|Name=mRNA_H-paniculata_contig21956.5799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEback to top mRNA from alignment at H-paniculata_contig21956:2839..3279- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21956.5799.1 ID=mRNA_H-paniculata_contig21956.5799.1|Name=mRNA_H-paniculata_contig21956.5799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig21956:2839..3279- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21956:2839..3279- >mRNA_H-paniculata_contig21956.5799.1 ID=mRNA_H-paniculata_contig21956.5799.1|Name=mRNA_H-paniculata_contig21956.5799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig21956:2839..3279- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |