mRNA_H-paniculata_contig21956.5799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21956.5799.1
Unique NamemRNA_H-paniculata_contig21956.5799.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.860e-31
Identity = 69/147 (46.94%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    1 WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADIRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
            W  L+  +DG+TKEARR C  KL  T M+SG+DP DFL  MD  R RLE+M + IPDE YED++LRAL  EY  +R  S + R F L +IR  +  MY D LSR ++   VAGRGVAM A         +++ C  C + GH   +C
Sbjct:   64 WKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAES-------SNVQCRNCQEFGHYANEC 203          
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.600e-11
Identity = 49/150 (32.67%), Postives = 73/150 (48.67%), Query Frame = 1
Query:    1 WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADIRHMVST---MYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
            W A   ++D  T+EARR CH++L   R  +G+DP DF       + RL  + + +    Y DI+L  L    E   I     RD N+A +  + +T   ++ D  SR  +  +V+GRG AM A+  SD        C  C + G  +RDC
Sbjct:  116 WRAQHERFDAQTQEARRACHNELFNLRHLAGNDPIDFFTKGWDLKLRLMVLGEEVSSPVYLDIMLSGLTKAPEFTFIREMHYRD-NIASVDSLQATANRIFVDQQSRNASGPMVSGRGAAMAAASSSD-------QCHRCKEYGPFQRDC 257          
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.660e-10
Identity = 45/149 (30.20%), Postives = 71/149 (47.65%), Query Frame = 1
Query:    1 WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAE--YERVRIASCEKRDFNLADIRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
            W AL  ++D  T+EARR CH++L   R  +G DP DF       + RL+ + + + D  Y DI+L  L     +E +R         ++  ++   +  + D  SR  +  +V+GRG AM  +  +D        C  C   GH +RDC
Sbjct:   96 WRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDLVYLDIMLSGLTKAPVFEFIREMHYRDNFTSVDSLQATANCFFVDQHSRNASGPVVSGRGAAMAVASDTD-------QCRRCKAYGHFQRDC 237          
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.750e-10
Identity = 39/130 (30.00%), Postives = 67/130 (51.54%), Query Frame = 1
Query:   61 DKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADIRHMVSTMY---TDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
            +KL  T M+ G +P+D+       R ++E+M + I D  ++D+ +     EY+ V++      +FN   + HM +TM+    D  SR  +   +AGRG  M  +           TCF CG++GH++R+C
Sbjct:    2 EKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFN---VNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQ------ETCFGCGEKGHIRRNC 122          
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.020e-9
Identity = 42/144 (29.17%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   10 LQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADIRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
            L   Y+  T E  R   ++L  T M+   +P+D+       R + E+M + I D  + D  +     EY+ V++      DFN+  ++  +  M+ D  SR      +AGRG AM A+   +       TCF CG++GH+ R+C
Sbjct:  100 LNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEE------PTCFDCGEKGHIWRNC 237          
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Match: UPI000DEC40E4 (LOW QUALITY PROTEIN: uncharacterized protein LOC112703916 n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI000DEC40E4)

HSP 1 Score: 52.4 bits (124), Expect = 4.390e-5
Identity = 36/148 (24.32%), Postives = 62/148 (41.89%), Query Frame = 1
Query:    1 WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVR-IASCEKRDFNLADIRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 441
            W  L+  +       R    D+ H  RM       D L  ++G    LE +E  I DE     ++ +LP+ YE ++ +    K   N  ++    S +  +     N  +  +   +  ++     G R   +TC+ CGK GH+KR+C
Sbjct:   39 WDKLERLHQAKGISNRLLLKDQFHNLRMDHNVKISDHLSAINGIISELEAIEVKIDDEDKALWLILSLPSSYEYIKPVLMYGKETLNFEEV---ASKLIAEERRMKNEGSTSSDLALVARSDNYGKGNRGRSVTCWKCGKSGHVKRNC 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21956.5799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.860e-3146.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE2.600e-1132.67Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KC00_9PHAE1.660e-1030.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Q1_ECTSI2.750e-1030.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KW66_9PHAE1.020e-929.17CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI000DEC40E44.390e-524.32LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21956contigH-paniculata_contig21956:2839..3279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.579925-CDS-H-paniculata_contig21956:2838..32791622929599.579925-CDS-H-paniculata_contig21956:2838..3279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21956 2839..3279 -
1691480930.5240462-CDS-H-paniculata_contig21956:2838..32791691480930.5240462-CDS-H-paniculata_contig21956:2838..3279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21956 2839..3279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21956.5799.1prot_H-paniculata_contig21956.5799.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21956 2839..3279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21956.5799.1

>prot_H-paniculata_contig21956.5799.1 ID=prot_H-paniculata_contig21956.5799.1|Name=mRNA_H-paniculata_contig21956.5799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
WAALQYKYDGNTKEARRECHDKLHTTRMQSGDDPEDFLFVMDGYRDRLEE
MEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADIRHMVSTMYTD
YLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC
back to top

mRNA from alignment at H-paniculata_contig21956:2839..3279-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21956.5799.1 ID=mRNA_H-paniculata_contig21956.5799.1|Name=mRNA_H-paniculata_contig21956.5799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig21956:2839..3279- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGCAGCGCTGCAATACAAGTATGACGGCAACACCAAGGAAGCACGGAG GGAGTGCCACGACAAACTCCACACAACAAGGATGCAGTCCGGAGATGATC CGGAAGATTTCCTCTTCGTCATGGATGGTTATCGCGACCGTTTGGAGGAA ATGGAGCAACCCATACCTGACGAACGCTACGAGGACATTATTCTCCGAGC CCTCCCCGCTGAGTACGAAAGGGTTCGTATTGCCAGTTGCGAGAAACGTG ACTTCAATTTGGCGGACATTCGACACATGGTTAGCACCATGTACACCGAC TACCTCTCCCGCCCGAATACCGCAAACCTGGTCGCAGGCCGCGGAGTCGC CATGCAGGCAAGTGGGGGAAGTGATGGCGGCAGAAGGAACCACATAACAT GTTTCTTTTGCGGGAAGCGAGGCCACCTGAAAAGAGACTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig21956:2839..3279-

>mRNA_H-paniculata_contig21956.5799.1 ID=mRNA_H-paniculata_contig21956.5799.1|Name=mRNA_H-paniculata_contig21956.5799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig21956:2839..3279- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGCAGCGCTGCAATACAAGTATGACGGCAACACCAAGGAAGCACGGAG
GGAGTGCCACGACAAACTCCACACAACAAGGATGCAGTCCGGAGATGATC
CGGAAGATTTCCTCTTCGTCATGGATGGTTATCGCGACCGTTTGGAGGAA
ATGGAGCAACCCATACCTGACGAACGCTACGAGGACATTATTCTCCGAGC
CCTCCCCGCTGAGTACGAAAGGGTTCGTATTGCCAGTTGCGAGAAACGTG
ACTTCAATTTGGCGGACATTCGACACATGGTTAGCACCATGTACACCGAC
TACCTCTCCCGCCCGAATACCGCAAACCTGGTCGCAGGCCGCGGAGTCGC
CATGCAGGCAAGTGGGGGAAGTGATGGCGGCAGAAGGAACCACATAACAT
GTTTCTTTTGCGGGAAGCGAGGCCACCTGAAAAGAGACTGCTGGGCAGCG
CTGCAATACAAGTATGACGGCAACACCAAGGAAGCACGGAGGGAGTGCCA
CGACAAACTCCACACAACAAGGATGCAGTCCGGAGATGATCCGGAAGATT
TCCTCTTCGTCATGGATGGTTATCGCGACCGTTTGGAGGAAATGGAGCAA
CCCATACCTGACGAACGCTACGAGGACATTATTCTCCGAGCCCTCCCCGC
TGAGTACGAAAGGGTTCGTATTGCCAGTTGCGAGAAACGTGACTTCAATT
TGGCGGACATTCGACACATGGTTAGCACCATGTACACCGACTACCTCTCC
CGCCCGAATACCGCAAACCTGGTCGCAGGCCGCGGAGTCGCCATGCAGGC
AAGTGGGGGAAGTGATGGCGGCAGAAGGAACCACATAACATGTTTCTTTT
GCGGGAAGCGAGGCCACCTGAAAAGAGACTGC
back to top