prot_H-paniculata_contig21927.5790.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21927.5790.1
Unique Nameprot_H-paniculata_contig21927.5790.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length460
Homology
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: D8LGT1_ECTSI (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT1_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 1.000e-105
Identity = 162/198 (81.82%), Postives = 180/198 (90.91%), Query Frame = 0
Query:  263 RAQTPHIVFVGQLAFSTTAQALEDHLRKRGGVEGRISVRLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGKGAKGARIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRADPKDLEAGARDWLNDEK 460
            R++ P IVFVGQLAFSTTA+ +E+H R RGG+EG ISVRLLT KGTNPP+S+GMAF++V+DAE+AYQCL LHHSRLDGRLLNVER+SGGGK  KG RI+E R EQKEFMKSVVQRVL EFI AGRLGK ELD+ A+GVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFR+DP+ LEAGARDWLNDEK
Sbjct:  175 RSRNPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPKSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKERKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRSDPETLEAGARDWLNDEK 372          
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: A0A6H5KAW2_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW2_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 2.670e-102
Identity = 158/196 (80.61%), Postives = 177/196 (90.31%), Query Frame = 0
Query:  265 QTPHIVFVGQLAFSTTAQALEDHLRKRGGVEGRISVRLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGKGAKGARIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRADPKDLEAGARDWLNDEK 460
            + P IVFVGQLAFSTTA+ +E+H R RGG+EG ISVRLLT KGTNPP+S+GMAF++V+DAE+AYQCL LHHSRLDGRLLNVER+SGGGK  KG RI+E R +QKEFMKSVVQRVL EFI AGRLGK ELD+ A+GVLEKMEAKVMERAVKDYCDKPDRLEL NPSAWFTHHAHELCFR+DP+ LEAGARDWL+DEK
Sbjct:  192 RNPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPQSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKEKKGERIQEKRGQQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSDPETLEAGARDWLDDEK 387          
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: A0A836CEL8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL8_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.570e-48
Identity = 101/184 (54.89%), Postives = 124/184 (67.39%), Query Frame = 0
Query:  260 RSKRAQTPHIVFVGQLAFSTTAQALEDHLRKRGGVEGRISVRLLTMKGTNPP--RSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGKGAKGARIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCF 441
            R+ +   P +VFVGQL+F TT   +E+H RKRGGVEG + VRLLT    NP   RS+GMAFVE E  ET YQCL LHH+RLDGR+LNVER+SGG   A   +I   R+EQK  MK  V R++ EFI  G L + ELD  A  VLEK E KV+E+A+ DYC KPD+  L+N SA+F H  H + F
Sbjct:  159 RTGKKAAPLVVFVGQLSFKTTEAEVEEHFRKRGGVEGELKVRLLT----NPTNGRSRGMAFVETESPETLYQCLTLHHTRLDGRILNVERTSGGKGDAHKQKISSLREEQKAHMKDTVARIMGEFIAKGLLKEGELDVDAVRVLEKFEGKVVEKALSDYCVKPDKATLRNKSAYFVHITHGIAF 338          
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: A0A4D9D4A6_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4A6_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.450e-32
Identity = 80/175 (45.71%), Postives = 114/175 (65.14%), Query Frame = 0
Query:  259 KRSKRAQTPHIVFVGQLAFSTTAQALEDHLRKRGGVEGRISVRLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGK-GAKGARIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWF 432
            KR +  + PHIVFVGQL+F T+A  L +HL K GGV G I VRLLT KG+N  +S+G AFV + DAE  Y+CL LHHS+L  R++NVERS GG     +  +++  R EQ+E +++   R+++E I+AG L   ELD+ A  +L + +       ++ YC + DR  L+NPSA+F
Sbjct:  126 KRRRIHENPHIVFVGQLSFDTSAHELREHLEK-GGVTGPIHVRLLTEKGSN--KSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRGEQREAIEATCDRIVKEKIEAGELLPGELDEQAVKLLTRYDGHTAVGILEAYCAE-DRARLRNPSAYF 296          
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: A0A8J2WQQ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WQQ0_9STRA)

HSP 1 Score: 130 bits (326), Expect = 9.740e-30
Identity = 76/201 (37.81%), Postives = 115/201 (57.21%), Query Frame = 0
Query:  256 PAAKRSKRA-----QTPHIVFVGQLAFSTTAQALEDHLRKRGGVEGRISVRLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGKGAKGARIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRADPKDLEAG 451
            PAA   KRA     + P + FVGQL +STT + +E   R +G VEG + VRLLT   T   RS+GMAFVE E AE  Y C+  HH+ LDGR +NVE+S+GGGK  K  ++K  R+ Q + ++  V RV+ EF+  GR+ +   D+  + +L++   +V   A++++     R    NP+A+ T     +    +P +  +G
Sbjct:  158 PAAPPPKRASQPPKRAPLVAFVGQLHYSTTKERIEQFFRSQG-VEGTLKVRLLTDAKTK--RSRGMAFVECETAEALYACVACHHAHLDGRRVNVEKSAGGGKATKKDKLKRHRERQDQKIEESVDRVIGEFVSQGRIEERVFDEGVRKLLQRRSGRVANMALEEFASLEGRESFDNPAAYLTKIVCRISAEENPFEKFSG 355          
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: A0A7S1TQR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.690e-29
Identity = 77/182 (42.31%), Postives = 114/182 (62.64%), Query Frame = 0
Query:  259 KRSKRAQTPHIVFVGQLAFSTTAQALEDHLRKRGGVEGRISVRLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGKGAKGAR---IKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVLEKMEAKVMERAVKDYCDKP---DRLELQNPSAWFTH 434
            +R +R   P IVFVGQL++ TTA+ L+ H     GVEG I+VRL T   T   RS+GMAFVE++  E  ++CL LHH+ LDGR +NVE+S+G G  A GAR   +K+ R  Q+E +   V R++ E ++A +L + E+D+    +L + E +++E A+  +C +    DR  + NPSA  TH
Sbjct:   13 RRGRR--NPCIVFVGQLSYRTTAEQLKKHFAA-AGVEGNIAVRLRTDPKTK--RSRGMAFVELDTPEALHECLKLHHTMLDGRNINVEKSAGRGGRATGARATKLKDQRAAQQETIDGAVARMVDERVEAKKLARGEIDERCIALLSRFEGRIVELALDAFCMRGAPGDRGGIANPSAMVTH 189          
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: A0A7S3XJ31_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJ31_HETAK)

HSP 1 Score: 127 bits (319), Expect = 4.800e-29
Identity = 89/230 (38.70%), Postives = 129/230 (56.09%), Query Frame = 0
Query:  215 TATTAKDRRLLRRQEERQXXXXEEGGXTGTGRAGAGGSAGHPAAKRSKRAQT----PHIVFVGQLAFSTTAQALEDHLRKRGGVEGRISVRLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGKGAKGA-RIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHEL 439
            T   AK RRL +RQ ER+      G  T   + G GG+       + K A+     P+IVFVGQL F TT++ +EDH R    + G I VRLLT K T  P  KGMAFVEV +    Y+CL LHHS L+ R +NVE+S GG    K   +I E + +Q++ +++ V+R+L+EF D G + + E ++     L   E  ++E A+K Y D+ D+ ++QN +A       +L
Sbjct:   16 TKMNAKQRRLAKRQAERESLSTSPG-RTNLQQQGVGGNKLTERTDKKKNAKKTKKIPNIVFVGQLDFKTTSKQIEDHFRAHD-IHGFIKVRLLTDKVTKKP--KGMAFVEVSNPTEMYKCLKLHHSSLNRRRINVEKSCGGKNTDKRKEKINELKQKQRQAVETTVKRILKEFTDRGDISETEFNETLMERLVSYEGTIVEEALKKYVDE-DKEKVQNRTALLVSLVRDL 240          
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: A0A7S4JM15_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM15_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.730e-26
Identity = 71/187 (37.97%), Postives = 114/187 (60.96%), Query Frame = 0
Query:  258 AKRSKRA---QTPHIVFVGQLAFSTTAQALEDHLRKRGG------VEGRISVRLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGKGA--KGARIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFT 433
            AKRSK+     +P+++F+GQL++ TT + L  H ++  G       E  + +RLLT   T   RS+G+AFVE ED ET Y CL LHH+ LDGR +NVERS+GG K +  +  +I + R EQ+E+M   + +++ +F   G + + ELD+    ++++  A ++E A+ +Y ++     L NPSA+ T
Sbjct:  221 AKRSKKRAKKSSPYVLFIGQLSYHTTKEGLFRHFQRELGKDKKEITEETLRIRLLTDSKTG--RSRGLAFVETEDPETMYACLQLHHTTLDGRCINVERSAGGKKESETRKGKITQYRKEQEEYMSGTIDKIIADFQSRGDISEGELDEGVVALMKRNSAALVETALAEYVEERGE-SLDNPSAYLT 404          
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: A0A6V2LJ41_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LJ41_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.760e-26
Identity = 68/180 (37.78%), Postives = 108/180 (60.00%), Query Frame = 0
Query:  261 SKRAQTPHIVFVGQLAFSTTAQALEDHLRKRGGVE----GRISVRLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGKG--AKGARIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTH 434
            S+  + P IVF+GQL+++TT   +  H +   G +      +S+RLLT   T   +S+GMAF+E  D E  Y CL LHH+ LDGR +NVERS+GG KG  A+  ++K  R EQ+E++   V ++L+++   G L ++ELDD    + ++    V+  A+ +Y +      ++NPSA+ TH
Sbjct:   35 SEAKKDPCIVFIGQLSYTTTKDQIFQHFQNELGSDVVTPDTLSIRLLT-DPTKNNKSRGMAFIETTDPELMYNCLKLHHTHLDGRRINVERSAGGNKGSEARQNKLKRYRTEQEEYLSETVNKILEDYKAQGDLNESELDDGVIALCKRHSPHVVSAALSEYVEARGG-HMENPSAYLTH 212          
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Match: W7TH40_9STRA (RNA binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH40_9STRA)

HSP 1 Score: 117 bits (292), Expect = 6.010e-26
Identity = 66/138 (47.83%), Postives = 94/138 (68.12%), Query Frame = 0
Query:  265 QTPHIVFVGQLAFSTTAQALEDHLRKRGGVEGRISVRLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSGGGK-GAKGARIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGVL 401
            + PHIVFVGQL+F T+A  L +HL + GGV G I VRLLT KG+N  +S+G AFV + DAE  Y+CL LHHS+L  R++NVERS GG     +  +++  R EQ+E +++   R+++E  +AG+L   ELD+ A  +L
Sbjct:  130 ENPHIVFVGQLSFDTSAHELREHL-ENGGVTGPIHVRLLTEKGSN--KSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLL 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21927.5790.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT1_ECTSI1.000e-10581.82RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5KAW2_9PHAE2.670e-10280.61RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CEL8_9STRA1.570e-4854.89RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D4A6_9STRA5.450e-3245.71RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A8J2WQQ0_9STRA9.740e-3037.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1TQR3_9STRA2.690e-2942.31Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3XJ31_HETAK4.800e-2938.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4JM15_9STRA2.730e-2637.97Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6V2LJ41_9STRA2.760e-2637.78Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
W7TH40_9STRA6.010e-2647.83RNA binding protein n=1 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 32..52
NoneNo IPR availablePANTHERPTHR23236:SF51EUKARYOTIC INITIATION FACTOR 4Bcoord: 86..416
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 86..416
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 269..346
e-value: 1.3E-9
score: 47.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 270..343
e-value: 1.5E-7
score: 31.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 268..350
score: 11.349
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 173..357
e-value: 1.5E-16
score: 62.7
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 261..353

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21927contigH-paniculata_contig21927:331..4306 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21927.5790.1mRNA_H-paniculata_contig21927.5790.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21927 190..4306 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21927.5790.1 ID=prot_H-paniculata_contig21927.5790.1|Name=mRNA_H-paniculata_contig21927.5790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=460bp
MVVMSEALATFSSTSHIESPAARISTESVGSNAKERRAARRAAAAAAAAE
EEEITPAGSSITLKIESSPAATFAITTPVMNAKERRAARRKAEQALSGDG
SGGGTPANPSTAETPAPAPAPAADLSSMTAKERRKAKRAAERMPSITITI
PSSLTPTAVSTSEEAGAGAGAGAGSTAKERRAAKRAAAREVREGTGSSGS
RMATAPVDCGQDANTATTAKDRRLLRRQEERQKREREEGGGTGTGRAGAG
GSAGHPAAKRSKRAQTPHIVFVGQLAFSTTAQALEDHLRKRGGVEGRISV
RLLTMKGTNPPRSKGMAFVEVEDAETAYQCLGLHHSRLDGRLLNVERSSG
GGKGAKGARIKETRDEQKEFMKSVVQRVLQEFIDAGRLGKNELDDVAKGV
LEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRADPKDLEA
GARDWLNDEK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf