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Homology
BLAST of mRNA_H-paniculata_contig2175.5749.1 vs. uniprot
Match: D7G2K9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2K9_ECTSI) HSP 1 Score: 212 bits (540), Expect = 2.740e-60 Identity = 153/279 (54.84%), Postives = 169/279 (60.57%), Query Frame = 1
Query: 352 MGRVRRYKKVKAIDPFSK----------RKTAKVNDKDRNLPPDVKNHQAQRLNNLQEN-GKSKKAKRRLPQWAHEELMETAKRVREEHDDSEGKNRRQPEPQRPTIEGKREDESMREFNKRVKQGTAQLLRDQFLEHSTTNKRRKQYLDDKKRKNKLKKQGLWEGVKRREHLDKEGAEEEEIFGTTXXXXXXXXQGGAKGRGMAR----------------------GRADDEEGVS-FADSERIKFGEVAHAPPDLAKIPKPKGFKDQGQAKPWARQ 1086
MGRVR+YKKVKA+DPF+K RK +D DRNLPPDVKNHQAQRLNNL+E K KK KRRLPQWAHEEL ETAKRVREEH D GK R QPEPQR +EGKREDESMR+FNKRV++GTAQLL+D+F EHS+TNK LW XXXXXXXX GRADD+EG + ERI+FGEVAHAPPDLAKIPKP+GFKDQGQAKPWARQ
Sbjct: 1 MGRVRKYKKVKAMDPFAKGGCGGRMGMGRKGG--SDLDRNLPPDVKNHQAQRLNNLEEGKDKKKKNKRRLPQWAHEELKETAKRVREEHADPGGKGR-QPEPQRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSSTNKXXXXXXXXXXXXXXXXXXXLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQ 276
BLAST of mRNA_H-paniculata_contig2175.5749.1 vs. uniprot
Match: A0A835YUV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV8_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.030e-35 Identity = 120/327 (36.70%), Postives = 157/327 (48.01%), Query Frame = 1
Query: 352 MGRVRRYKKVKAIDPFSKRKTAKVNDKDRNLPPDVKNHQAQRLNNLQENGKSKKAKRRLPQWAHEELMETAKRVREEHDDSEGKNRRQPEP-----QRPTIEGKREDESMREFNKRVKQGTAQLLRDQFLEHSTTNKRRKQYLDDKKRKNKLKKQGLWEGVKRREHLDKEGAEEEEIFGTTXXXXXXXXQGGAKGRGMARGRADDEEGVSFADSERIKFGEVAHAPPDLAKIPKPKGFKDQGQAKPWARQQQHKHXXXXXXXXXXXXXXXXXXXXMPGRNVRGGEAAGEAAKAQKRQMEEMRQRVLEAYSSMKKRRRAGQTQFVGSD 1317
MGRVRRYKK K +D SKRK A D + NLPPD NHQAQRL + ++AK+RLP+WA EEL ETAKR RE P P + I KR DES+REFN+RV++ A+ L+D S+T RRK++L +K +K KL++QGLWE K + +++G EE F+ E I+FGE H PP +PK KG K KPW R X G + E A+ + +Q+E +R + AY+ +KKRRRAGQ Q V D
Sbjct: 1 MGRVRRYKKAKNLDITSKRKRADKKDVEHNLPPDTANHQAQRLK--ADGTLKRRAKQRLPEWAKEELRETAKREREADKQLLAGAAATPLPGENDTPKVKITPKRTDESLREFNERVRKVAAEALKDNAKRASSTVARRKKHLAEKSQKKKLQRQGLWEEHKMQVAREEQGIAEER---------------------------------DFSKPEHIQFGETVHEPPRFQSMPKLKGLKPDLAEKPWLR---------GLRSDAITGLKRKAGGXXXXXXXXXGVLSAEGAQLKAQQLERVRTEAVAAYADLKKRRRAGQVQHVAHD 283
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-11_002610.1 |
| Exons | 5 |
| Model size | 1802 |
| Cds size | 972 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2175.5749.1 >prot_H-paniculata_contig2175.5749.1 ID=prot_H-paniculata_contig2175.5749.1|Name=mRNA_H-paniculata_contig2175.5749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MGRVRRYKKVKAIDPFSKRKTAKVNDKDRNLPPDVKNHQAQRLNNLQENG
KSKKAKRRLPQWAHEELMETAKRVREEHDDSEGKNRRQPEPQRPTIEGKR
EDESMREFNKRVKQGTAQLLRDQFLEHSTTNKRRKQYLDDKKRKNKLKKQ
GLWEGVKRREHLDKEGAEEEEIFGTTSGGGGGGGQGGAKGRGMARGRADD
EEGVSFADSERIKFGEVAHAPPDLAKIPKPKGFKDQGQAKPWARQQQHKH
NRNADKKSKGEDDGGGGGGGMPGRNVRGGEAAGEAAKAQKRQMEEMRQRV
LEAYSSMKKRRRAGQTQFVGSDL* back to topmRNA from alignment at H-paniculata_contig2175:6828..11656+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2175.5749.1 ID=mRNA_H-paniculata_contig2175.5749.1|Name=mRNA_H-paniculata_contig2175.5749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4829bp|location=Sequence derived from alignment at H-paniculata_contig2175:6828..11656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCGCCCCAGCCTGCTGCCCAGTACTACAGACTGTTGTACTGTCCGTAC
TCCATTTCCTGCTGTCGGAGACAATATTGGTACCCGTTGTGTTGGGAAAC
CTTGTCATTCTCCGCTGTGGGGTAATGACCCTTTCAAGGCATACAGCACT
CACACCAACTGTCCTCACCCGAAACACACGCGCGCCCCCTAAGTGCGATA
ATCCTAAAGGATTGGCAGTCTGGAGGGAGATCTCTTTGAGGATCCTGCTC
GGTTCGGTTTGGAATCCGTTTCTGTGTTACACTCGTGGTGTGGTCAGTAT
TGGCTTCTGTTTAAGCCACATTGTCTGTGCGTGGCTGTGGTGTGAACGAA
GATGGGTCGTGTGAGGAGGTACAAGAAGGTGAAGGCCATAGACCCCTTTT
CCAAGCGCAAGACAGCCAAGGTAAACGACAAGGACAGGAACCTACCCCCG
GACGTCAAGAATCATCAGGCCCAGCGCCTCAACAACCTACAAGGTGAGAA
GTACGAAACTCAACTCGCGACAGCAAGGGATGACAGTCTTCACGATTAGC
CAAGGTGATCGTAACCGTTTTACAGTTGTATCCAAGAGTCATACGGATGA
CAGCATTCGCTGTTTTACAGACGACGGGTCTCGACAGGTTGCTGTTGGGC
GCATAATATGTTAGTGGCATTGGACGCCACACCTTCTGCGTTGATCTCTC
CCTGCCCAAAGTTTACGAGTGATGTACTACGTTGCAATCTTCAGGCGATA
CCGTTTCAAAGTTGCCGCACTTCGTAACATCCAGATTGGCATATATCTGT
ATCCAGACGCTCCCAAAACGAAGGGGGGGGGGGGGGTGGTATACATATTA
CAACACTCACCGAGCCAAGTGTACAACATGCATGGAGGGATATGTTCAGA
CTCTATTCAAACTCACAGAGACTTCTTTTGTGAAAGATTCTTGATTTTCG
CAACAAATTAGGTATAGCCCAACCCGGTCGTACCACAGCAACACCGCCAG
CTCGAAACATGACCATTACCAACATGCTAAATTATGCACATGTACTGGCA
CGTCGAGCGAACACGAGTACTGATTTCTGTACCGTACTACTGTTGTGTGA
CGGTTTATCACATCGTCCACAGCCGGCGCAAACATTGCCTTTGCTGAAAG
TTTTCACTCTGCTAGAAGGATCCCCCTTGCCCCAAAAACGAGATAACTCA
TTAACGATGGTGCCCGGAAATTCGTCCCCTTCGCTCTGCGTGGCAAATGA
TTAACGACATGGATGAAAAACCCGAACGCGTCCGTCCGTGAGAAAACGGC
AAGAGCAAAAAGGCGAAGAGAAGGCTGCCGCAGTGGGCTCATGAGGAGCT
GATGGAAACAGCCAAGAGGGTCAGGGAGGAGCATGACGATTCGGAGGGGA
AAAATCGACGACAACCTGAACCGCAGGTACGAGCGGGTGTTGCTTCTTTC
CCTGCACTCCATTGTCGTATCTTCATTATATTTATATGTACGTTCTGTGC
ATAGCAGCTGGACGATTTTCTCTGTCGGCATGGACTTGTCCTGAGTAGAC
ATTTGCTTGTACTGAGTAGATAGATATTTGTTGATCTCTCTGTGCGCCGT
TCGTGTGGGACATGGCCGTGGTGGTGCTGCCCGCCGAGCAGCGGGGGTTT
TGTGCTACTGTGCCAACAGTCCTCACCAAGATAGCAGCAGCAGCAAGCGA
AAGGAGGAGGGGGACCAAGTGCAGTACATCGTACTCTCTTCCTGCAACAT
ATTTTTTAATGATTAGGAGCGCTCTGTCGACAAAATGATGTTACACAGCC
TGTGTTTCTGTACCGCCTGTGTCGCGCCGTTGGGTGAACTACTGCATATA
CGGCCTGCTAGCAGCTGGCCAAAGTGAATATTTTTTCAACATCGGTCAGC
GGGCTTCTTTCCCGCGCACTTCGACAACGAAGGGAATTTTGTTCCAGTAG
TATACCGCTACTTCGTACGCACTCCCTCGAAACGGGTTCATATCCACCTT
TGGCACCGATTATCAAGCTTCAGTTGTTGAACAGTAATGTTTACCGCAGT
CGAGAGCTCTTCAACGAATGCGTCCTCGCGGTGAAACTTGAGGTTGCTCG
ACAAGCATCATGTTGGCCGACCTTTTGCTGGTTGTAAAAAATGAAGCTGA
GCAGGTGCTTCCCACAGAAAACTACAACTCGCTTCGCTCCCGCGAATTCT
TCGGAAGGGTTTCAATTATTTTCATAGTAGACCCATGGCTGTGGGATCGG
AGCCTGAGTAGTAGAGCTATTACGCGACGGAAGCTTGAGTGGTCGGAAGT
GTTGGTTCCGCCCCAGTTTCTAGTACTCGTGTGGCAGCCGACTTTTTATT
GTTATGGGTACCACAACAGGAAGCAAAAACTTGCGTGTGGGGAATCATCA
CAGTAATGATGTTGTTTGTCAAGAATTTTGGGTTTCACCACGTTTCTCGT
ATTCGTTTTGAGGCCTTTTTTGTACGATTAACGAAAGAGGATAGGCGTCG
CATGAAAGGGGTGTTTTATGCTTTGGTGGGTGAAATGCTTCTTGTTTTTT
TCCTCGACCACGAAAGGTTGATATCAGGACGAAAATACTGCCGTTCAACC
CCACGAATTGAGGGTAGAAAAAACTTTCCTTCTTGTATTTCCTCCTCCGT
CCCATGGGCCGTGTTTCGCGTGTAATGATATTTTTGTTGTGGTTGTACCG
ACGGTCTAATGCAGCGGCCCACGATAGAGGGCAAGCGAGAGGATGAAAGC
ATGCGGGAGTTCAACAAACGGGTTAAGCAGGGAACGGCGCAGCTGTTGAG
AGACCAATTTCTAGAGCACAGCACTACCAACAAACGACGGAAGCAGTGAG
TACCTTCGTCTTCAAAGTATCGAACATATTGAAACGGATTATACCTGTTG
TTTTTTTCAACTTTCACCACCTTTCACACGGAGCAGACCGTCCCGCCTTT
TGTTTGGTCAAACAGCTCCTTTCATTTTTTGCGTATTTTTTTGTGAGTTA
TGCATGTAACGACACCTTGTTCTCAGATCGATGAGATTAATTCGCGACCA
GAATCGGGCTGTAAAATCTTGCGTCCGGTAGCTCGCATAGCTAGTTTCCG
CAAGTCCCATGCAGTAGTGAGCATGTTACATGGAACAACTACTACGAAAA
GCAATCGGCCAACCGTCAAGCGATCACCTTGAGTTGCACCGCACGGAATT
GACGACCTCTTTGGTTGGGCACCCCATTTTTTATTTTTGTGATTTTATTC
GTCTGACACACAGTCCTATCACCACCACCGCGCACTGTCTTTTGTTATGT
TTCATATGACCATAATTCCCCGGTCCTACTCTGCCCTGCCCTACCCTACT
CTACCGTGTTCACCTTGAAACCAATCACCCATACGCTCAACCAAAAAACA
GATACCTTGACGATAAAAAGCGCAAAAACAAACTCAAGAAGCAAGGGTTG
TGGGAAGGGGTGAAGCGCCGCGAGCATTTGGATAAAGAAGGAGCTGAGGA
AGAGGAAATCTTCGGTACCACCAGTGGCGGCGGCGGTGGTGGCGGCCAAG
GCGGGGCAAAGGGCAGAGGCATGGCACGGGGGCGAGCAGACGATGAGGAG
GGCGTCTCCTTTGCTGACTCGGAACGAATTAAGTGCGTCGGACGTCTCTA
TCGAGGGCATGCGTCGTACTATATTAAGTAGCGAACCATTTTCATGCACA
GTATTTCTAACCGATGGGGGAAATGTGTTGACCCTCCATCGAGAGAAATG
TCATGCTGCCTTGCCACCCTAACATGAAAACAACCACCCTTCAGGCGCAA
CATGCTTCGATGTGTATTACTGAGAGGGATGAGATGCGGCATAGTCATAC
AGTGCTGTTGTTCTGTATCAGGTGGAATCTATCAAATCAAGTATGATGGG
AGCGGGGACATGCTGCAGTTCTCCTTAACAGTCCTTAGTTTGAAGAAAAT
GAGACATCGTTTGTTTTTATCTTGAAATATGCGCTCCCTCGTTCTTTTCG
CCGAAAATCAAATCAGGTTCGGAGAAGTTGCGCACGCGCCGCCGGACCTC
GCGAAAATTCCGAAACCGAAAGGGTTCAAAGATCAGGGCCAGGCAAAGCC
CTGGGCGCGACAACAGCAGCACAAACATAATAGGAATGCCGACAAGAAGA
GTAAGGGCGAAGATGACGGCGGAGGTGGAGGTGGAGGAATGCCAGGGCGG
AACGTCCGGGGTGGGGAGGCCGCTGGAGAGGCTGCGAAGGCGCAGAAACG
GCAGATGGAGGAGATGAGACAGAGGGTACTAGAGGCGTACTCGAGCATGA
AGAAGAGGAGGCGGGCGGGACAGACGCAGTTCGTAGGAAGCGATCTATGA
TTCTTTCGCTGTTGTTTTGTTTTGGAGAACTGTTGGAGGCTGTGGTTGGT
TTTGATGGCTCAGGTTGTGTATGTCGTCGGCAGTGGCGAGAAGAAGGTAT
TTGGTCGAACTGCGCAGTAGTATGACGCGCACCCCACAACTGGATGAGTG
TTCAACTGGCGACCGTACCCAATTTGACTCTTGGCAGTTCCTAGGTGGGC
TAGTGAGTATCGTAGCGGTCTGTGCGTTGCATATGTGGTATCCCTGCGTA
CAGGTTGGCGTTCGCGCGTTGTCGTTTTGCGGGACTATCCGCCTCAGGAT
GTTCTTACGGCACCCTGTGTAGGGCCTCACGTTGTGTAGAACTGACTGTA
AACATTTAGGAATGCAGTTCATCTGGACATGACACAGCGGTCAAGAGTGA
CATGTGGGAAACCACTAACAGCAGATTGTGGAAGAAAATGTCGTAACGAA
ATCCAAGATATGAAAAAAGTTATTTGTAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig2175:6828..11656+ >mRNA_H-paniculata_contig2175.5749.1 ID=mRNA_H-paniculata_contig2175.5749.1|Name=mRNA_H-paniculata_contig2175.5749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig2175:6828..11656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGTGTGAGGAGGTACAAGAAGGTGAAGGCCATAGACCCCTTTTC
CAAGCGCAAGACAGCCAAGGTAAACGACAAGGACAGGAACCTACCCCCGG
ACGTCAAGAATCATCAGGCCCAGCGCCTCAACAACCTACAAGATGGGTCG
TGTGAGGAGGTACAAGAAGGTGAAGGCCATAGACCCCTTTTCCAAGCGCA
AGACAGCCAAGGTAAACGACAAGGACAGGAACCTACCCCCGGACGTCAAG
AATCATCAGGCCCAGCGCCTCAACAACCTACAAGAAAACGGCAAGAGCAA
AAAGGCGAAGAGAAGGCTGCCGCAGTGGGCTCATGAGGAGCTGATGGAAA
CAGCCAAGAGGGTCAGGGAGGAGCATGACGATTCGGAGGGGAAAAATCGA
CGACAACCTGAACCGCAGAAAACGGCAAGAGCAAAAAGGCGAAGAGAAGG
CTGCCGCAGTGGGCTCATGAGGAGCTGATGGAAACAGCCAAGAGGGTCAG
GGAGGAGCATGACGATTCGGAGGGGAAAAATCGACGACAACCTGAACCGC
AGCGGCCCACGATAGAGGGCAAGCGAGAGGATGAAAGCATGCGGGAGTTC
AACAAACGGGTTAAGCAGGGAACGGCGCAGCTGTTGAGAGACCAATTTCT
AGAGCACAGCACTACCAACAAACGACGGAAGCACGGCCCACGATAGAGGG
CAAGCGAGAGGATGAAAGCATGCGGGAGTTCAACAAACGGGTTAAGCAGG
GAACGGCGCAGCTGTTGAGAGACCAATTTCTAGAGCACAGCACTACCAAC
AAACGACGGAAGCAATACCTTGACGATAAAAAGCGCAAAAACAAACTCAA
GAAGCAAGGGTTGTGGGAAGGGGTGAAGCGCCGCGAGCATTTGGATAAAG
AAGGAGCTGAGGAAGAGGAAATCTTCGGTACCACCAGTGGCGGCGGCGGT
GGTGGCGGCCAAGGCGGGGCAAAGGGCAGAGGCATGGCACGGGGGCGAGC
AGACGATGAGGAGGGCGTCTCCTTTGCTGACTCGGAACGAATTAAATACC
TTGACGATAAAAAGCGCAAAAACAAACTCAAGAAGCAAGGGTTGTGGGAA
GGGGTGAAGCGCCGCGAGCATTTGGATAAAGAAGGAGCTGAGGAAGAGGA
AATCTTCGGTACCACCAGTGGCGGCGGCGGTGGTGGCGGCCAAGGCGGGG
CAAAGGGCAGAGGCATGGCACGGGGGCGAGCAGACGATGAGGAGGGCGTC
TCCTTTGCTGACTCGGAACGAATTAAGTTCGGAGAAGTTGCGCACGCGCC
GCCGGACCTCGCGAAAATTCCGAAACCGAAAGGGTTCAAAGATCAGGGCC
AGGCAAAGCCCTGGGCGCGACAACAGCAGCACAAACATAATAGGAATGCC
GACAAGAAGAGTAAGGGCGAAGATGACGGCGGAGGTGGAGGTGGAGGAAT
GCCAGGGCGGAACGTCCGGGGTGGGGAGGCCGCTGGAGAGGCTGCGAAGG
CGCAGAAACGGCAGATGGAGGAGATGAGACAGAGGGTACTAGAGGCGTAC
TCGAGCATGAAGAAGAGGAGGCGGGCGGGACAGACGCAGTTCGTAGGAAG
CGATCTATGAGTTCGGAGAAGTTGCGCACGCGCCGCCGGACCTCGCGAAA
ATTCCGAAACCGAAAGGGTTCAAAGATCAGGGCCAGGCAAAGCCCTGGGC
GCGACAACAGCAGCACAAACATAATAGGAATGCCGACAAGAAGAGTAAGG
GCGAAGATGACGGCGGAGGTGGAGGTGGAGGAATGCCAGGGCGGAACGTC
CGGGGTGGGGAGGCCGCTGGAGAGGCTGCGAAGGCGCAGAAACGGCAGAT
GGAGGAGATGAGACAGAGGGTACTAGAGGCGTACTCGAGCATGAAGAAGA
GGAGGCGGGCGGGACAGACGCAGTTCGTAGGAAGCGATCTATGA back to top
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