mRNA_H-paniculata_contig21722.5743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21722.5743.1
Unique NamemRNA_H-paniculata_contig21722.5743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.710e-35
Identity = 175/631 (27.73%), Postives = 259/631 (41.05%), Query Frame = 2
Query: 1031 DPASETATLTSSNDSAIKVKIVPHPLGKRTKIAWIWRFAREFTPAIRDLNVFCTVNACSRGVVKPCMHLVKWVNSNGTTRHDQPLQEAAP*AVCYLDAAAWD*VR*G*GQRGG*G*GRSRDYRLNIGLLLWVQDRVRRQRQRQVPKLGFKGRANRQLKLSCFLTRTLDQMAKEQADCRLILWRAI--KPEACSHLPRRQLSATGSHLVSYLRGNDD*QQYLRQ*VGQDLQRAC-----WLREGRQWCAPAVLLGL*YHGAFLGG*LDLTTIVNEEYITFSFSYVPANCAEITGVSIATGAFPGSRLMTFPGG*MWW*VTVSAT*WENISRCRMYSSRSPWIKV*PWLMHVSW*ESTSFCTTPIA*TRSPSGVWELAVRKRCARI*RWRGSRRS*RHA*ASSVTRWSTTTSST--TCRRCARSSTWCTSSS--GETTRGALVN------------------------TRW-----MKLRFLQLKIVIVVYLKKHLTSKRKLTMNEWFVTNEECSLLDTISGVTTRM*GSVNTHISQTTFIMKNMVEVLKLENHLIRIGEVEHGHH--VMEETAVIDLIPQA*EVLKVLMEMMESKNLGKVTLEKERIPVLLDPRRKSCSKKECVNGGRTLRA 2797
            D A+ET+TL S+N + + V IVP   GK+TK +W+W+  REF P I   NVFC            C HL+ W  ++GT       ++  P       A   D                +   R N+   +    +   +   +    G  G +   +K        L    +  A+ R ++W AI  +P+   +    +L   G     Y+             +       C      LR  R+ C   V LG  Y G FLG  LDLTT+ NEEYITFS SY+      IT V +AT AFPGS                    W  I +    + +    +    +M  +      F    +A T    G    A R     + +    R        +SVT W+   + +  T    A        ++  G  +  A+ N                        TRW     M +R L+LK  IV Y + +  + RKL+  EW VTNE CSLLD ++ VT ++ G+ +THISQT F M+ + E+   + + IR+ +  +     + E+  V DL+ +  +V +V++  ME K LG   +  ERI  LLDPRRK CS +  VNG   L+A
Sbjct:   42 DGAAETSTLHSNNGTQVVVTIVPQTSGKKTKRSWVWQVCREFKPLINGKNVFCMA----------CKHLMLWKPADGTGGMSSHYKKKHP---ALYKALMDDHTT-------------TAQGRANVAAAVAFDPKPTGKATGKGK--GKAGSSTPSIKDYMQTGNPLLASTEAAANRRFVVWCAINMRPQNMRYDDGYKLHM-GMLCPKYVESTMS-DATFNSILSTIYTETCDAVKTGLRLHRESC---VKLG--YVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSH------------TAADIEPW--IEKASFTTFKLLTTEFFADMMGENVQPKDVF----LAFTVDQGGNVVNACRNLDVEVLKCNAHR-------LNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKA 612          
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.250e-33
Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 1975 NMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
            +MMG+ ++ +DVFL FTVDQG  VVNAC  + V V+  NAHRLNSVT+W+LGI GS +  +N  ME+L K+L A +GVFSH+ VNNDEL D+Q L+EEF ++YE IRRNDTR  SQH M
Sbjct:   10 DMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAM 128          
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.210e-32
Identity = 167/654 (25.54%), Postives = 251/654 (38.38%), Query Frame = 2
Query: 1034 PASETATLTSSNDSAIKVKIVPHPLGKRTKIAWIWRFAREFTPAIRDLNVFCTVNACSRGVVKPCMHLVKWVNS------NGTTRHDQPLQEAAP*AVCYLDAAAWD*VR*G*GQRGG*G*GRSRDYRLNIGLLLWVQDRVRRQRQR--QVPKLGFKGRANRQLKLSCFLTRTLDQMAKEQADCRLILWRAI--KPEACSHLP--RRQLSATGSHLVSYLRGNDD*QQYLRQ*VGQDLQRACW-LREGRQWCAPAVLLGL*YHGAFLGG*LDLTTIVNEEYITFSFSYVPANCAEITGVSIATGAFPGSRLMTFPGG*MWW*VTVSAT*WENISRCRMYSSRSPWIKV*PWLMHVSW*ESTSFCTTPIA*TRSPSGVWELAVRKRCARI*RWRGSRRS*RHA*ASSVTRWSTTTSSTTCRRCARSSTWCTSSSGE----TTRGALV----------------------------------------NTRW-----MKLRFLQLKIVIVVYLKKHLTSKRKLTMNEWFVTNEECSLLDTISGVTTRM*GSVNTHISQTTFIMKNMVEVLKLENHLIR-----IGEVEHGHHVMEETAVIDLIPQA*EVLKVLMEMMESKNLGKVTLEKERIPVLLDPRRKSCSKKECVNGGRTLR 2794
            P    A++       +KV +     GKR   +W W FA  F+P+I   NV C V         PC  L+KW  +       GT+   + L+      +C+         + G  +        +      +G   +   R++ +  R  +V +L     A     L  ++  T+ +  K+ AD R +LW  I  +PE        +  L +     V+         Q L +  G  L      LR  R+       LG+ Y G FLG  LDLTT   EEYITF+ ++V     ++T +++A  AFPGS                     E+I                PW+  ++    + F    +     PS V+      +   I               ++ T    T     C R   +  W    +G+       G L+                                        +TRW     M  R L LK  I  Y KK+  ++RKLT NEW +TNE CSLL  +S VT RM GSV+TH+ Q  FI+  ++E+L  + H IR     +  +       ++T V+DL  +A  VL+VL E M  K +G   +  ER+  L+DPRRKS    +  NG   LR
Sbjct:   45 PPESEASIDVGKGKTVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADG---TPCGRLMKWEGAALGKKGTGTSGISKHLE------ICHKSEVDKHKAKVGASE------DNTAPIVAALGEFFFFCPRLKNKESRDGRVYRLYS---APSSSSLMNYMVPTMTKARKDAADRRFVLWCCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLRE-----ENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTA------------------EDIQ---------------PWIEKLTLEYFSGFMGESV----QPSDVFLAFTVDQGKNI--------------INACTALGVTVVECNCHRLNTAVVWALGIAGKGRLNPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLR 624          
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.040e-29
Identity = 72/137 (52.55%), Postives = 91/137 (66.42%), Query Frame = 1
Query: 1921 SADDISWRIDVVVSDGVGNMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
            +ADDI   I+ +  + + ++MG  +E QDVFL FTVDQG  VVNAC  + V V+  N HR+NS  +W+LGI GS   CKN  M    KKL A +GVFSH+ VNND L ++Q L  + H +YE IRRNDTR TSQ KM
Sbjct:  141 TADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKM 273          
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.430e-29
Identity = 72/137 (52.55%), Postives = 90/137 (65.69%), Query Frame = 1
Query: 1921 SADDISWRIDVVVSDGVGNMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
            +ADDI   I+ +  +   ++MG  +E QDVFL FTVDQG  VVNAC  + V V+  N HR+NS  +W+LGI GS   CKN  M    KKL A +GVFSH+ VNND L ++Q L  + H +YE IRRNDTR TSQ KM
Sbjct:  141 TADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKM 273          
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.840e-29
Identity = 70/137 (51.09%), Postives = 95/137 (69.34%), Query Frame = 1
Query: 1921 SADDISWRIDVVVSDGVGNMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
            +ADDIS  I+ +  +   + MG+ +E +DVFL FTVDQG  VVNAC+ + V V+  N HR+N+  +W+LGI G+ +  +N  M  L KKL A +GVFSH+ VNND+L ++Q L E+ H VY+ IRRNDTR TSQ KM
Sbjct:  330 TADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRLEEDLHAVYQLIRRNDTRWTSQFKM 464          
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.810e-26
Identity = 65/137 (47.45%), Postives = 88/137 (64.23%), Query Frame = 1
Query: 1921 SADDISWRIDVVVSDGVGNMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
            +A+DI   I+ +  +     MG+ ++  DVFL FTVDQG  ++NAC  + V V+  N HRLN+  +W+LGI G  ++  N  M  L KKL A +GVFSH+ VNNDEL ++Q L E F  +YE +R NDTR TSQ KM
Sbjct:  137 TAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRPNDTRWTSQFKM 271          
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.530e-15
Identity = 115/411 (27.98%), Postives = 170/411 (41.36%), Query Frame = 2
Query: 1517 LTRTLDQMAKEQADCRLILWRAI--KPEACSH---------LPRRQLSATGSHLVSYLRGNDD*QQYLRQ*VGQDLQRACWLREGRQWCAPAVLLGL*YHGAFLGG*LDLTTIVNEEYITFSFSYVP-ANCAEITGVSIATGAFPGSRLMTFPGG*MWW*VTVSAT*WENISRCRMYSSRSPWIK----------V*PWLM-HVSW*ESTSFCTTPIA*TRSPSGVWELAVRKRCARI*RWRGSRRS*RHA*ASSVTRWSTTTSSTTCRRCARSSTW------CTSSSGETTRGALVNT----------------RW-----MKLRFLQLKIVIVVYLKK-------HLTSKRKLTMNEWFVTNEECSLLDTISGVTTRM*GSVNTHISQTTFIMKNMVEVLKLENHLIRI 2578
            ++R +D+  ++ AD R ++W  I  +P+   +         +   Q   T     ++ +  D     ++Q +  DL+    LRE          LG+ Y GAFLG  LDLTT+ NEEYITF+ SYV      ++T V++AT AFPGS                     E+I          PWI+          + P +  H  +   T      I    +  GV    V   C R+               +S   W+   +   C R  ++           +S G  +  A+ N                  W     M +R L L   I  Y ++       H   KRKLT +EW VTNE CSLLDT+S  T RM G+ +THISQ TFI+  ++E+LK ++H IR+
Sbjct:    1 MSRKMDKKQRDLADLRYVIWCCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRL---LRE--------EFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTA------------------EDIK---------PWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGV--PVVECNCHRV---------------NSAVLWALGIAG--CARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQRLEADLHRVYEWTSQFRMMVRLLILNKAINEYFRRLAQQNPQHKQLKRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLKEDSHPIRV 354          
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5KZZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.020e-8
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 2167 MERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
            M  L KKL A +GVF+H+ VNNDEL ++Q L E F  +YE +RRNDTR TSQ KM
Sbjct:    1 MGTLMKKLAAMVGVFNHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWTSQFKM 55          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KJ52_9PHAE2.710e-3527.73Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KAN7_9PHAE1.250e-3360.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE4.210e-3225.54Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JZU3_9PHAE1.040e-2952.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.430e-2952.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE5.840e-2951.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE1.810e-2647.45Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE1.530e-1527.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZZ1_9PHAE1.020e-860.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21722contigH-paniculata_contig21722:2..4202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2802
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21722.5743.1prot_H-paniculata_contig21722.5743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21722 356..2054 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929592.078097-UTR-H-paniculata_contig21722:1..3551622929592.078097-UTR-H-paniculata_contig21722:1..355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21722 2..355 -
1691480926.8885686-UTR-H-paniculata_contig21722:1..3551691480926.8885686-UTR-H-paniculata_contig21722:1..355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21722 2..355 -
1622929592.1308186-UTR-H-paniculata_contig21722:2054..23991622929592.1308186-UTR-H-paniculata_contig21722:2054..2399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21722 2055..2399 -
1691480926.9275773-UTR-H-paniculata_contig21722:2054..23991691480926.9275773-UTR-H-paniculata_contig21722:2054..2399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21722 2055..2399 -
1622929592.1426947-UTR-H-paniculata_contig21722:2804..42021622929592.1426947-UTR-H-paniculata_contig21722:2804..4202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21722 2805..4202 -
1691480926.9356437-UTR-H-paniculata_contig21722:2804..42021691480926.9356437-UTR-H-paniculata_contig21722:2804..4202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21722 2805..4202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929592.0926356-CDS-H-paniculata_contig21722:355..4941622929592.0926356-CDS-H-paniculata_contig21722:355..494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21722 356..494 -
1691480926.8984122-CDS-H-paniculata_contig21722:355..4941691480926.8984122-CDS-H-paniculata_contig21722:355..494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21722 356..494 -
1622929592.103348-CDS-H-paniculata_contig21722:1141..14971622929592.103348-CDS-H-paniculata_contig21722:1141..1497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21722 1142..1497 -
1691480926.9068851-CDS-H-paniculata_contig21722:1141..14971691480926.9068851-CDS-H-paniculata_contig21722:1141..1497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21722 1142..1497 -
1622929592.1154065-CDS-H-paniculata_contig21722:1844..20541622929592.1154065-CDS-H-paniculata_contig21722:1844..2054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21722 1845..2054 -
1691480926.915483-CDS-H-paniculata_contig21722:1844..20541691480926.915483-CDS-H-paniculata_contig21722:1844..2054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21722 1845..2054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21722.5743.1

>prot_H-paniculata_contig21722.5743.1 ID=prot_H-paniculata_contig21722.5743.1|Name=mRNA_H-paniculata_contig21722.5743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=235bp
MVCTGSPAWTLIPRRFPGWLARPNHNCQRGVHHLLILVCPCELRRDYRRQ
HRDRSLSRLSADDISWRIDVVVSDGVGNMMGKYIEVQDVFLPFTVDQGMT
VVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLT
ACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKMDEAT
ISAAEDRHRRVLEEAPDQQAEADNERVVRHERGV*
back to top

mRNA from alignment at H-paniculata_contig21722:2..4202-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21722.5743.1 ID=mRNA_H-paniculata_contig21722.5743.1|Name=mRNA_H-paniculata_contig21722.5743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4201bp|location=Sequence derived from alignment at H-paniculata_contig21722:2..4202- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAATACCCGATGCTTTGCCGCCAATACCAACTTGACCAAGCCCAATAAG CTGCCAAATCACTGTACCAAAATGGCTCACCTGGATTTTCGAGACGAATT GCGAGTCTGAAAAACGTGATGTAGTGATTTTTCATTCGGGGGAAATTTAT GTTGTGCTTGATTCGTGGACTCCGAGTATATCGGGCTACGATCGTCGGAC GGTTGTAGCGTCGATATTTGCAAGCAATTTCTTACTGCAGGCAGACAGGA CATGACCCAGTAGTAGTATTGACATTTCCACTTGGCCCTAGTTGGAGATG GCATGTATGACCCAGTGGGGTTGACACGCCCACCTCCTGGACAGATTTTG CTGCAGAAAGACATGGCAGCTCAGTGGTTGCCAGCCGACCATCGCGACGG GGCAGGCAATATGCGTTAGAAAGGAACGATAGTGTCGACCTCGCGACGGG TGCAGAATCTTTTGGTGGAGAAACATAATCAATGTGAGTTGGAAACATGC GCAAGGATGTCGTGTTCGGGACGGGGTCCCGAGGCCCACTTCGTGCTTAT GAGAAATGTTTCTTGCAACGTGGTAGATCTCCCTGGCGAGAAGTCTTGAT TCAAAATAACCCCAAACTTCAGTCATGCGTATTTTACACAAGCATGTAAT TGTTGTGGATCTTTGCCAGGGCTGAAGAGCCAAATAAGAATGCGGTCGAC CCGCCCAGGCTTTGCCACCAACTCAACGCAATAGCACCTATCCAACCCAA CTCAACACCTCAAGTTTACCAGGGATGCTCTCGGTAAAAAGACCGCGGTA TTCGGTATTTGGTTCCGATACCGCGAAAAACTCGATTTACCGTTTACCGT ACGGTGATGGTACTGTGAAAATTCCCACGACCGCGGGTCTGACCGAGTTG GTGTGTTAGTGTATGGTAGAACGTTTGTTTTATGCTTAACTGACTAGGGC GCACATTTGGTGCACAATTGTTTAGTTGTAGTCCCTAGACAGCACACGCT GGCCCGCGAGCTGGTGGCGGTGCTGTCGCCGACCCTGCCAGCGAAACAGC GACTCTCACTTCCTCCAACGACTCAGCGATCAAGGTCAAGATTGTTCCCC ATCCTTTGGGCAAACGTACAAAGATAGCTTGGATTTGGCGTTTCGCGCGT GAGTTTACACCCGCCATCAGGGATCTGAACGTGTTCTGCACAGTAAATGC GTGCTCAAGAGGTGTGGTGAAACCATGCATGCACCTCGTCAAGTGGGTAA ACAGTAACGGAACTACAAGGCACGATCAACCACTACAGGAAGCAGCACCG TAAGCAGTATGTTACCTTGATGCAGCAGCTTGGGATTGAGTCCGATGAGG ATGAGGACAACGAGGAGGATAAGGATGAGGACGAAGCCGCGATTATCGGT GAGCGTCCGTTTGCTCTGATTGCGGTCCCTATGCGTATTCCGTAGTCAGC GCAGCTGGCGACTACAACTGTACTGTACTGACGACATTGTCAAGATTTCG ATTGAGAAATTTGAAATTTATTAGGTGAAATTTATACCAGTAGGCGAGCT CAATGCTGCTGAATACTGCAGGTACACTGAGAGCTATTTACTAGATTGCC TGGAATGCACACACGTCGTTGCTCGATTGCTTCGTCCGCATTTTCGTCTT TCGCCCTGAGTTCGTAGGCATATATACCTGCAGACTTTTTTGCTATTGAG CTATTTAGTAGTCCATACTTCGAACATGCAGCTTGAGCGCTAAACTCACG CCTGTCTTTTCTCGCACTTCCTCATTACCCATGCCCTATTCTCCTCTTGC CAGCCTAAATATTGGCTTGCTCCTCTGGGTGCAGGACCGGGTTCGTCGAC AAAGACAGCGGCAGGTCCCAAAGCTGGGGTTTAAGGGAAGAGCCAATCGC CAGTTGAAGTTGTCGTGTTTTTTAACCCGGACGCTGGATCAGATGGCGAA GGAGCAGGCCGACTGCCGGCTCATTCTTTGGCGCGCGATTAAACCTGAGG CCTGTAGTCATTTGCCAAGACGTCAGCTTTCAGCTACTGGCAGTCACCTC GTCTCCTACCTTCGCGGAAACGACGATTAGCAACAATACCTTCGACAATA AGTTGGACAGGATCTACAGAGAGCTTGTTGGCTACGTGAGGGACGACAAT GGTGTGCACCGGCAGTCCTGCTTGGACTTTAATACCACGGCGCTTTCCTG GGTGGTTAGCTAGACCTAACCACAATTGTCAACGAGGAGTACATCACCTT CTCATTCTCGTATGTCCCTGCGAACTGCGCAGAGATTACCGGCGTCAGCA TCGCGACCGGAGCCTTTCCCGGCTCTCGGCTGATGACATTTCCTGGCGGA TAGATGTGGTGAGTTCTTGAGTTTAAAATGCAAGAACAGTCTGTTGACAT GATAAAAACCAAAAAAAAAGAAGAAAAAAGATGGGTCGACTCTAGCGCAT GTTCAAGCTGTAGTAGCTTTAAAGTGTTTCTAAGCGTGTAGTAGCCCTAA AGTGTGTCGAAGCGTTTAGTAGCGTATACCATGGTACAAGGTGCCTGGCG ATTTTCATTTTACTCGGGTTTTTTTAATTCACGTCAAGTATTTCTTCGTG AAATGGTTTGCCTCTTATTTCTTGGTGGATTAGAGAATTCCTTCATGCAT TGATGGCACATCATATTTGCATAGTAATCTCTCTTCTTCCCCCTTCATTG GGCAGGTGGTGAGTGACGGTGTCGGCAACATGATGGGAAAATATATCGAG GTGCAGGATGTATTCCTCCCGTTCACCGTGGATCAAGGTATGACCGTGGT TAATGCATGTGAGTTGGTGAGAGTCAACGTCATTCTGTACAACGCCCATC GCCTGAACTCGGTCACCATCTGGAGTTTGGGAATTGGCGGTTCGGAAAAG ATGTGCAAGAATCTAGAGATGGAGAGGCTCACGAAGAAGCTGACGGCATG CATAGGCGTCTTCAGTCACGCGGTGGTCAACAACGACGAGCTCAACGACA TGCAGACGCTGCGCGAGGAGTTCCACGTGGTGTACGAGTTCATCAGGCGA AACGACACGAGGTAGGACAAGACTCGTTATTTACATATTGATAAAAAACA AATTCCCGTTACTTGGAAATATATATTAAATACCGTGAAAAACGTCTTAG AAAGTAACGTCTGGTTCGTGCAGCGTTGCAAGCTAACTTCGCAGTGTTGT TTTCAGTCTGTCATTCAAATCTTGGGTTAGTTTGCAAGCGTGTTACGTGT TCAGGCATCACTTATTGTGTTGTGGGGCGTAGACCTCCAGTTCATTGGAG GCTTCGTTGCGTCCTTGTTGAGTGGGCATTTCTCGTCCTTACGGTATGGC AGGGTCAGCGTTTCAGTGCATATACCGATATATATATATATATATATATA TATATATATATATGTATACGGTACAGTATGTTCATACTGTTGCATTAACT AATATGAATGTATGTATATATAGACACATACCATGGGTGGCTCGATTTTC AAGGTTTTGCTTCGCGCTAAGCCTTCCATCAAAAGTGTACGGTAGTGCTT AATGTAGCCTATGATGTAACACGGGAGAAGTAACGGAGTAGCCCTAGCAT ATAAATACGCGTAAGAACACGAACAACATGCTGTCCGTAACTCTCGCGCC CTCCTGCCTCTCCCTGTTGTTTTGTGTTTTTACACCTAACCCGTATTCGG TAAAGCAGGTGCACTAGTCAACACAAGATGGATGAAGCTACGATTTCTGC AGCTGAAGATCGTCATCGTCGTGTACTTGAAGAAGCACCTGACCAGCAAG CGGAAGCTGACAATGAACGAGTGGTTCGTCACGAACGAGGAGTGTAGTCT ACTGGATACCATCTCGGGGGTGACGACGCGAATGTAAGGGTCCGTAAACA CGCACATCAGCCAAACGACGTTCATCATGAAAAATATGGTGGAGGTGCTC AAGCTGGAGAATCACCTCATCCGTATAGGCGAGGTTGAGCATGGCCACCA TGTGATGGAGGAGACAGCGGTGATTGACCTCATACCCCAGGCGTAAGAGG TGTTGAAGGTATTGATGGAGATGATGGAGAGCAAGAACCTGGGCAAGGTC ACCCTGGAGAAAGAGCGTATTCCCGTGCTGCTGGACCCGAGGCGGAAGTC GTGCTCAAAAAAAGAGTGCGTCAATGGCGGACGAACGTTGAGGGCCCTCG A
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig21722:2..4202-

>mRNA_H-paniculata_contig21722.5743.1 ID=mRNA_H-paniculata_contig21722.5743.1|Name=mRNA_H-paniculata_contig21722.5743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at H-paniculata_contig21722:2..4202- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTGCACCGGCAGTCCTGCTTGGACTTTAATACCACGGCGCTTTCC
TGGGTGGTTAGCTAGACCTAACCACAATTGTCAACGAGGAGTACATCACC
TTCTCATTCTCGTATGTCCCTGCGAACTGCGCAGAGATTACCGGCGTCAG
CATCGCGACCGGAGCCTTTCCCGGCTCTCGGCTGATGACATTTCCTGGCG
GATAGATGTGATGGTGTGCACCGGCAGTCCTGCTTGGACTTTAATACCAC
GGCGCTTTCCTGGGTGGTTAGCTAGACCTAACCACAATTGTCAACGAGGA
GTACATCACCTTCTCATTCTCGTATGTCCCTGCGAACTGCGCAGAGATTA
CCGGCGTCAGCATCGCGACCGGAGCCTTTCCCGGCTCTCGGCTGATGACA
TTTCCTGGCGGATAGATGTGGTGGTGAGTGACGGTGTCGGCAACATGATG
GGAAAATATATCGAGGTGCAGGATGTATTCCTCCCGTTCACCGTGGATCA
AGGTATGACCGTGGTTAATGCATGTGAGTTGGTGAGAGTCAACGTCATTC
TGTACAACGCCCATCGCCTGAACTCGGTCACCATCTGGAGTTTGGGAATT
GGCGGTTCGGAAAAGATGTGCAAGAATCTAGAGATGGAGAGGCTCACGAA
GAAGCTGACGGCATGCATAGGCGTCTTCAGTCACGCGGTGGTCAACAACG
ACGAGCTCAACGACATGCAGACGCTGCGCGAGGAGTTCCACGTGGTGTAC
GAGTTCATCAGGCGAAACGACACGAGGTGGTGAGTGACGGTGTCGGCAAC
ATGATGGGAAAATATATCGAGGTGCAGGATGTATTCCTCCCGTTCACCGT
GGATCAAGGTATGACCGTGGTTAATGCATGTGAGTTGGTGAGAGTCAACG
TCATTCTGTACAACGCCCATCGCCTGAACTCGGTCACCATCTGGAGTTTG
GGAATTGGCGGTTCGGAAAAGATGTGCAAGAATCTAGAGATGGAGAGGCT
CACGAAGAAGCTGACGGCATGCATAGGCGTCTTCAGTCACGCGGTGGTCA
ACAACGACGAGCTCAACGACATGCAGACGCTGCGCGAGGAGTTCCACGTG
GTGTACGAGTTCATCAGGCGAAACGACACGAGGTGCACTAGTCAACACAA
GATGGATGAAGCTACGATTTCTGCAGCTGAAGATCGTCATCGTCGTGTAC
TTGAAGAAGCACCTGACCAGCAAGCGGAAGCTGACAATGAACGAGTGGTT
CGTCACGAACGAGGAGTGTAGGTGCACTAGTCAACACAAGATGGATGAAG
CTACGATTTCTGCAGCTGAAGATCGTCATCGTCGTGTACTTGAAGAAGCA
CCTGACCAGCAAGCGGAAGCTGACAATGAACGAGTGGTTCGTCACGAACG
AGGAGTGTAG
back to top