mRNA_H-paniculata_contig21722.5743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE) HSP 1 Score: 155 bits (393), Expect = 2.710e-35 Identity = 175/631 (27.73%), Postives = 259/631 (41.05%), Query Frame = 2
Query: 1031 DPASETATLTSSNDSAIKVKIVPHPLGKRTKIAWIWRFAREFTPAIRDLNVFCTVNACSRGVVKPCMHLVKWVNSNGTTRHDQPLQEAAP*AVCYLDAAAWD*VR*G*GQRGG*G*GRSRDYRLNIGLLLWVQDRVRRQRQRQVPKLGFKGRANRQLKLSCFLTRTLDQMAKEQADCRLILWRAI--KPEACSHLPRRQLSATGSHLVSYLRGNDD*QQYLRQ*VGQDLQRAC-----WLREGRQWCAPAVLLGL*YHGAFLGG*LDLTTIVNEEYITFSFSYVPANCAEITGVSIATGAFPGSRLMTFPGG*MWW*VTVSAT*WENISRCRMYSSRSPWIKV*PWLMHVSW*ESTSFCTTPIA*TRSPSGVWELAVRKRCARI*RWRGSRRS*RHA*ASSVTRWSTTTSST--TCRRCARSSTWCTSSS--GETTRGALVN------------------------TRW-----MKLRFLQLKIVIVVYLKKHLTSKRKLTMNEWFVTNEECSLLDTISGVTTRM*GSVNTHISQTTFIMKNMVEVLKLENHLIRIGEVEHGHH--VMEETAVIDLIPQA*EVLKVLMEMMESKNLGKVTLEKERIPVLLDPRRKSCSKKECVNGGRTLRA 2797
D A+ET+TL S+N + + V IVP GK+TK +W+W+ REF P I NVFC C HL+ W ++GT ++ P A D + R N+ + + + + G G + +K L + A+ R ++W AI +P+ + +L G Y+ + C LR R+ C V LG Y G FLG LDLTT+ NEEYITFS SY+ IT V +AT AFPGS W I + + + + +M + F +A T G A R + + R +SVT W+ + + T A ++ G + A+ N TRW M +R L+LK IV Y + + + RKL+ EW VTNE CSLLD ++ VT ++ G+ +THISQT F M+ + E+ + + IR+ + + + E+ V DL+ + +V +V++ ME K LG + ERI LLDPRRK CS + VNG L+A
Sbjct: 42 DGAAETSTLHSNNGTQVVVTIVPQTSGKKTKRSWVWQVCREFKPLINGKNVFCMA----------CKHLMLWKPADGTGGMSSHYKKKHP---ALYKALMDDHTT-------------TAQGRANVAAAVAFDPKPTGKATGKGK--GKAGSSTPSIKDYMQTGNPLLASTEAAANRRFVVWCAINMRPQNMRYDDGYKLHM-GMLCPKYVESTMS-DATFNSILSTIYTETCDAVKTGLRLHRESC---VKLG--YVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSH------------TAADIEPW--IEKASFTTFKLLTTEFFADMMGENVQPKDVF----LAFTVDQGGNVVNACRNLDVEVLKCNAHR-------LNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKA 612
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.250e-33 Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 1975 NMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
+MMG+ ++ +DVFL FTVDQG VVNAC + V V+ NAHRLNSVT+W+LGI GS + +N ME+L K+L A +GVFSH+ VNNDEL D+Q L+EEF ++YE IRRNDTR SQH M
Sbjct: 10 DMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAM 128
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE) HSP 1 Score: 145 bits (367), Expect = 4.210e-32 Identity = 167/654 (25.54%), Postives = 251/654 (38.38%), Query Frame = 2
Query: 1034 PASETATLTSSNDSAIKVKIVPHPLGKRTKIAWIWRFAREFTPAIRDLNVFCTVNACSRGVVKPCMHLVKWVNS------NGTTRHDQPLQEAAP*AVCYLDAAAWD*VR*G*GQRGG*G*GRSRDYRLNIGLLLWVQDRVRRQRQR--QVPKLGFKGRANRQLKLSCFLTRTLDQMAKEQADCRLILWRAI--KPEACSHLP--RRQLSATGSHLVSYLRGNDD*QQYLRQ*VGQDLQRACW-LREGRQWCAPAVLLGL*YHGAFLGG*LDLTTIVNEEYITFSFSYVPANCAEITGVSIATGAFPGSRLMTFPGG*MWW*VTVSAT*WENISRCRMYSSRSPWIKV*PWLMHVSW*ESTSFCTTPIA*TRSPSGVWELAVRKRCARI*RWRGSRRS*RHA*ASSVTRWSTTTSSTTCRRCARSSTWCTSSSGE----TTRGALV----------------------------------------NTRW-----MKLRFLQLKIVIVVYLKKHLTSKRKLTMNEWFVTNEECSLLDTISGVTTRM*GSVNTHISQTTFIMKNMVEVLKLENHLIR-----IGEVEHGHHVMEETAVIDLIPQA*EVLKVLMEMMESKNLGKVTLEKERIPVLLDPRRKSCSKKECVNGGRTLR 2794
P A++ +KV + GKR +W W FA F+P+I NV C V PC L+KW + GT+ + L+ +C+ + G + + +G + R++ + R +V +L A L ++ T+ + K+ AD R +LW I +PE + L + V+ Q L + G L LR R+ LG+ Y G FLG LDLTT EEYITF+ ++V ++T +++A AFPGS E+I PW+ ++ + F + PS V+ + I ++ T T C R + W +G+ G L+ +TRW M R L LK I Y KK+ ++RKLT NEW +TNE CSLL +S VT RM GSV+TH+ Q FI+ ++E+L + H IR + + ++T V+DL +A VL+VL E M K +G + ER+ L+DPRRKS + NG LR
Sbjct: 45 PPESEASIDVGKGKTVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADG---TPCGRLMKWEGAALGKKGTGTSGISKHLE------ICHKSEVDKHKAKVGASE------DNTAPIVAALGEFFFFCPRLKNKESRDGRVYRLYS---APSSSSLMNYMVPTMTKARKDAADRRFVLWCCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLRE-----ENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTA------------------EDIQ---------------PWIEKLTLEYFSGFMGESV----QPSDVFLAFTVDQGKNI--------------INACTALGVTVVECNCHRLNTAVVWALGIAGKGRLNPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLR 624
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.040e-29 Identity = 72/137 (52.55%), Postives = 91/137 (66.42%), Query Frame = 1
Query: 1921 SADDISWRIDVVVSDGVGNMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
+ADDI I+ + + + ++MG +E QDVFL FTVDQG VVNAC + V V+ N HR+NS +W+LGI GS CKN M KKL A +GVFSH+ VNND L ++Q L + H +YE IRRNDTR TSQ KM
Sbjct: 141 TADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKM 273
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.430e-29 Identity = 72/137 (52.55%), Postives = 90/137 (65.69%), Query Frame = 1
Query: 1921 SADDISWRIDVVVSDGVGNMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
+ADDI I+ + + ++MG +E QDVFL FTVDQG VVNAC + V V+ N HR+NS +W+LGI GS CKN M KKL A +GVFSH+ VNND L ++Q L + H +YE IRRNDTR TSQ KM
Sbjct: 141 TADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKM 273
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 135 bits (341), Expect = 5.840e-29 Identity = 70/137 (51.09%), Postives = 95/137 (69.34%), Query Frame = 1
Query: 1921 SADDISWRIDVVVSDGVGNMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
+ADDIS I+ + + + MG+ +E +DVFL FTVDQG VVNAC+ + V V+ N HR+N+ +W+LGI G+ + +N M L KKL A +GVFSH+ VNND+L ++Q L E+ H VY+ IRRNDTR TSQ KM
Sbjct: 330 TADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRLEEDLHAVYQLIRRNDTRWTSQFKM 464
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.810e-26 Identity = 65/137 (47.45%), Postives = 88/137 (64.23%), Query Frame = 1
Query: 1921 SADDISWRIDVVVSDGVGNMMGKYIEVQDVFLPFTVDQGMTVVNACELVRVNVILYNAHRLNSVTIWSLGIGGSEKMCKNLEMERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
+A+DI I+ + + MG+ ++ DVFL FTVDQG ++NAC + V V+ N HRLN+ +W+LGI G ++ N M L KKL A +GVFSH+ VNNDEL ++Q L E F +YE +R NDTR TSQ KM
Sbjct: 137 TAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRPNDTRWTSQFKM 271
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.530e-15 Identity = 115/411 (27.98%), Postives = 170/411 (41.36%), Query Frame = 2
Query: 1517 LTRTLDQMAKEQADCRLILWRAI--KPEACSH---------LPRRQLSATGSHLVSYLRGNDD*QQYLRQ*VGQDLQRACWLREGRQWCAPAVLLGL*YHGAFLGG*LDLTTIVNEEYITFSFSYVP-ANCAEITGVSIATGAFPGSRLMTFPGG*MWW*VTVSAT*WENISRCRMYSSRSPWIK----------V*PWLM-HVSW*ESTSFCTTPIA*TRSPSGVWELAVRKRCARI*RWRGSRRS*RHA*ASSVTRWSTTTSSTTCRRCARSSTW------CTSSSGETTRGALVNT----------------RW-----MKLRFLQLKIVIVVYLKK-------HLTSKRKLTMNEWFVTNEECSLLDTISGVTTRM*GSVNTHISQTTFIMKNMVEVLKLENHLIRI 2578
++R +D+ ++ AD R ++W I +P+ + + Q T ++ + D ++Q + DL+ LRE LG+ Y GAFLG LDLTT+ NEEYITF+ SYV ++T V++AT AFPGS E+I PWI+ + P + H + T I + GV V C R+ +S W+ + C R ++ +S G + A+ N W M +R L L I Y ++ H KRKLT +EW VTNE CSLLDT+S T RM G+ +THISQ TFI+ ++E+LK ++H IR+
Sbjct: 1 MSRKMDKKQRDLADLRYVIWCCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRL---LRE--------EFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTA------------------EDIK---------PWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGV--PVVECNCHRV---------------NSAVLWALGIAG--CARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQRLEADLHRVYEWTSQFRMMVRLLILNKAINEYFRRLAQQNPQHKQLKRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLKEDSHPIRV 354
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Match: A0A6H5KZZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ1_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.020e-8 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 2167 MERLTKKLTACIGVFSHAVVNNDELNDMQTLREEFHVVYEFIRRNDTRCTSQHKM 2331
M L KKL A +GVF+H+ VNNDEL ++Q L E F +YE +RRNDTR TSQ KM
Sbjct: 1 MGTLMKKLAAMVGVFNHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWTSQFKM 55 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21722.5743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21722.5743.1 >prot_H-paniculata_contig21722.5743.1 ID=prot_H-paniculata_contig21722.5743.1|Name=mRNA_H-paniculata_contig21722.5743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=235bp MVCTGSPAWTLIPRRFPGWLARPNHNCQRGVHHLLILVCPCELRRDYRRQback to top mRNA from alignment at H-paniculata_contig21722:2..4202- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21722.5743.1 ID=mRNA_H-paniculata_contig21722.5743.1|Name=mRNA_H-paniculata_contig21722.5743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4201bp|location=Sequence derived from alignment at H-paniculata_contig21722:2..4202- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21722:2..4202- >mRNA_H-paniculata_contig21722.5743.1 ID=mRNA_H-paniculata_contig21722.5743.1|Name=mRNA_H-paniculata_contig21722.5743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at H-paniculata_contig21722:2..4202- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |