prot_H-paniculata_contig21672.5726.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig21672.5726.1
Unique Name	prot_H-paniculata_contig21672.5726.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	96

Homology

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.310e-51
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0

Query:    3 QVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            +VLQYAPNA +SRGGTKLLCQSDF+LGSRV KLTRRRTRGNLR GARYCLLA TLDGGLG +LPVDERVFRRLYALQGIMSNALGH GAANP+
Sbjct:  100 KVLQYAPNATNSRGGTKLLCQSDFYLGSRVGKLTRRRTRGNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 192

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A397FV89_9STRA (CPSF_A domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FV89_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.590e-20
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 0

Query:    4 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            V+QY P   +SRGG KLL  SDFHLG+RV  L R+R   +      Y  L +T +GGLGV++PV ER+FRR+Y LQ IM N L      NP+
Sbjct:    7 VMQYEPTHVESRGGQKLLRTSDFHLGTRVTCLLRKRMVDS--SFPLYVTLLATAEGGLGVLIPVQERLFRRMYTLQSIMINVLPQNAGLNPR 96

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A835Z873_9STRA (Cleavage/polyadenylation specificity factor, A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z873_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.090e-20
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0

Query:    3 QVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            ++L+YAP    SRGG +L+C +DFH+G+ V     +R R N     R+      LDG + ++ P++ER FRRLYALQG+M NAL H    NP+
Sbjct:  115 KILRYAPQLLASRGGHRLVCDADFHIGAPVGAFGPQRLRNNKLNAPRFGAAVGGLDGSVALLAPLEERAFRRLYALQGVMCNALEHGAGVNPR 207

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A6G0WGC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.420e-18
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 0

Query:    4 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGAR-YCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            V+QY P   +SRGG +LL  SDFH+G+RV  L R+R    L      Y  L +T +GGLGV++PV ER+FRRLY LQ IM NAL      NP+
Sbjct: 1328 VMQYEPTHVESRGGQRLLRTSDFHVGARVTSLMRKRV---LESPIPLYVTLLATAEGGLGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1417

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A485L0M5_9STRA (Aste57867_14310 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0M5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.930e-18
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 0

Query:    4 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            VLQY P   +SRGG +LL  SDFH+G+RV  L R+R   +      Y  L +T +GG+GV++PV ER+FRRLY LQ IM NAL      NP+
Sbjct: 1323 VLQYEPTHVESRGGQRLLRTSDFHVGARVTSLLRKRVVES--PFPFYVTLLATAEGGIGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1412

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: W4G356_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G356_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.930e-18
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 0

Query:    4 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            V+QY P   +SRGG KLL  SDFHLG+RV  L R+R   +      Y  L +T +GGLGV++PV ER+FRR+Y LQ IM N L      NP+
Sbjct: 1334 VMQYEPTHVESRGGQKLLRTSDFHLGTRVTCLLRKRMVDS--SFPLYVTLLATAEGGLGVLIPVQERLFRRMYTLQSIMVNVLPQNAGLNPR 1423

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: K8YVP3_NANGC (Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC)

HSP 1 Score: 87.4 bits (215), Expect = 2.990e-18
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 0

Query:    3 QVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTR-----GNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            Q+LQY P   +SRGG +L+ ++DFHL  R++ L   R       G  R G R  +  S ++GG+G ++PV+E+V+RRLYALQ +M NAL H GA NP+
Sbjct:  236 QLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGS-VEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR 332

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A024UE49_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE49_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.600e-18
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 0

Query:    4 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            VLQY P   +SRGG KLL  SDFHLG+RV  L R+R          Y  L +T +GG+GV++PV ER+FRR+Y LQ IM N L      NP+
Sbjct: 1330 VLQYEPTHVESRGGQKLLRTSDFHLGTRVTSLLRKRVLDC--PFPLYVTLLATAEGGVGVLIPVQERLFRRMYTLQSIMVNVLPQNAGLNPR 1419

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A4D9CM95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.950e-18
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 0

Query:    3 QVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTR-----GNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            Q+LQY P   +SRGG +L+ ++DFHL  R++ L   R       G  R G R  +  S ++GG+G ++PV+E+V+RRLYALQ +M NAL H GA NP+
Sbjct: 1792 QLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGS-VEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR 1888

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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A1V9ZBF8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBF8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.180e-18
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 0

Query:    4 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 95
            V Q+AP++ +SRGG +LL  +DFH+G+RV  + R+R          Y  L +T +GGLGV+ PV E+ FRRLY LQ IM NAL H    NP+
Sbjct: 1356 VFQFAPSSIESRGGQRLLRSADFHVGARVTAMLRKRL--FEAKVMTYVTLLATAEGGLGVLTPVHEKTFRRLYTLQTIMINALPHNAGLNPR 1445

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8W9_ECTSI	1.310e-51	88.17	CPSF_A domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A397FV89_9STRA	3.590e-20	50.00	CPSF_A domain-containing protein n=7 Tax=Aphanomyc...	[more]
A0A835Z873_9STRA	4.090e-20	44.09	Cleavage/polyadenylation specificity factor, A sub...	[more]
A0A6G0WGC0_9STRA	1.420e-18	50.54	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A485L0M5_9STRA	1.930e-18	50.00	Aste57867_14310 protein n=1 Tax=Aphanomyces stella...	[more]
W4G356_9STRA	1.930e-18	50.00	Uncharacterized protein n=5 Tax=Aphanomyces astaci...	[more]
K8YVP3_NANGC	2.990e-18	45.92	Cleavage and polyadenylation specificity factor su...	[more]
A0A024UE49_9STRA	3.600e-18	50.00	Uncharacterized protein n=2 Tax=Aphanomyces invada...	[more]
A0A4D9CM95_9STRA	4.950e-18	45.92	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
A0A1V9ZBF8_9STRA	9.180e-18	47.83	Uncharacterized protein n=1 Tax=Achlya hypogyna Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004871	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	PFAM	PF03178	CPSF_A	coord: 4..94 e-value: 1.5E-13 score: 50.8
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 3..65 e-value: 1.9E-9 score: 39.1
None	No IPR available	PANTHER	PTHR10644	DNA REPAIR/RNA PROCESSING CPSF FAMILY	coord: 3..95
None	No IPR available	PANTHER	PTHR10644:SF2	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1	coord: 3..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig21672	contig	H-paniculata_contig21672:2046..3063 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig21672.5726.1	mRNA_H-paniculata_contig21672.5726.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig21672 2046..3063 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig21672.5726.1 ID=prot_H-paniculata_contig21672.5726.1|Name=mRNA_H-paniculata_contig21672.5726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MPQVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARY
CLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004871	Cleavage/polyA-sp_fac_asu_C
IPR015943	WD40/YVTN_repeat-like_dom_sf