mRNA_H-paniculata_contig21672.5726.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21672.5726.1
Unique NamemRNA_H-paniculata_contig21672.5726.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.310e-51
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    7 QVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            +VLQYAPNA +SRGGTKLLCQSDF+LGSRV KLTRRRTRGNLR GARYCLLA TLDGGLG +LPVDERVFRRLYALQGIMSNALGH GAANP+
Sbjct:  100 KVLQYAPNATNSRGGTKLLCQSDFYLGSRVGKLTRRRTRGNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 192
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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A397FV89_9STRA (CPSF_A domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FV89_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.590e-20
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   10 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            V+QY P   +SRGG KLL  SDFHLG+RV  L R+R   +      Y  L +T +GGLGV++PV ER+FRR+Y LQ IM N L      NP+
Sbjct:    7 VMQYEPTHVESRGGQKLLRTSDFHLGTRVTCLLRKRMVDS--SFPLYVTLLATAEGGLGVLIPVQERLFRRMYTLQSIMINVLPQNAGLNPR 96
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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A835Z873_9STRA (Cleavage/polyadenylation specificity factor, A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z873_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.090e-20
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    7 QVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            ++L+YAP    SRGG +L+C +DFH+G+ V     +R R N     R+      LDG + ++ P++ER FRRLYALQG+M NAL H    NP+
Sbjct:  115 KILRYAPQLLASRGGHRLVCDADFHIGAPVGAFGPQRLRNNKLNAPRFGAAVGGLDGSVALLAPLEERAFRRLYALQGVMCNALEHGAGVNPR 207
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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A6G0WGC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.420e-18
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:   10 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGAR-YCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            V+QY P   +SRGG +LL  SDFH+G+RV  L R+R    L      Y  L +T +GGLGV++PV ER+FRRLY LQ IM NAL      NP+
Sbjct: 1328 VMQYEPTHVESRGGQRLLRTSDFHVGARVTSLMRKRV---LESPIPLYVTLLATAEGGLGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1417
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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A485L0M5_9STRA (Aste57867_14310 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0M5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.930e-18
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   10 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            VLQY P   +SRGG +LL  SDFH+G+RV  L R+R   +      Y  L +T +GG+GV++PV ER+FRRLY LQ IM NAL      NP+
Sbjct: 1323 VLQYEPTHVESRGGQRLLRTSDFHVGARVTSLLRKRVVES--PFPFYVTLLATAEGGIGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1412
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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: W4G356_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G356_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.930e-18
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   10 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            V+QY P   +SRGG KLL  SDFHLG+RV  L R+R   +      Y  L +T +GGLGV++PV ER+FRR+Y LQ IM N L      NP+
Sbjct: 1334 VMQYEPTHVESRGGQKLLRTSDFHLGTRVTCLLRKRMVDS--SFPLYVTLLATAEGGLGVLIPVQERLFRRMYTLQSIMVNVLPQNAGLNPR 1423
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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: K8YVP3_NANGC (Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC)

HSP 1 Score: 87.4 bits (215), Expect = 2.990e-18
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    7 QVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTR-----GNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            Q+LQY P   +SRGG +L+ ++DFHL  R++ L   R       G  R G R  +  S ++GG+G ++PV+E+V+RRLYALQ +M NAL H GA NP+
Sbjct:  236 QLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGS-VEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR 332
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BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A024UE49_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE49_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.600e-18
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   10 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            VLQY P   +SRGG KLL  SDFHLG+RV  L R+R          Y  L +T +GG+GV++PV ER+FRR+Y LQ IM N L      NP+
Sbjct: 1330 VLQYEPTHVESRGGQKLLRTSDFHLGTRVTSLLRKRVLDC--PFPLYVTLLATAEGGVGVLIPVQERLFRRMYTLQSIMVNVLPQNAGLNPR 1419
[Close]
BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A4D9CM95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.950e-18
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    7 QVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTR-----GNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            Q+LQY P   +SRGG +L+ ++DFHL  R++ L   R       G  R G R  +  S ++GG+G ++PV+E+V+RRLYALQ +M NAL H GA NP+
Sbjct: 1792 QLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGS-VEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR 1888
[Close]
BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Match: A0A1V9ZBF8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBF8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.180e-18
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   10 VLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARYCLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK 285
            V Q+AP++ +SRGG +LL  +DFH+G+RV  + R+R          Y  L +T +GGLGV+ PV E+ FRRLY LQ IM NAL H    NP+
Sbjct: 1356 VFQFAPSSIESRGGQRLLRSADFHVGARVTAMLRKRL--FEAKVMTYVTLLATAEGGLGVLTPVHEKTFRRLYTLQTIMINALPHNAGLNPR 1445
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21672.5726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W9_ECTSI1.310e-5188.17CPSF_A domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A397FV89_9STRA3.590e-2050.00CPSF_A domain-containing protein n=7 Tax=Aphanomyc... [more]
A0A835Z873_9STRA4.090e-2044.09Cleavage/polyadenylation specificity factor, A sub... [more]
A0A6G0WGC0_9STRA1.420e-1850.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L0M5_9STRA1.930e-1850.00Aste57867_14310 protein n=1 Tax=Aphanomyces stella... [more]
W4G356_9STRA1.930e-1850.00Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
K8YVP3_NANGC2.990e-1845.92Cleavage and polyadenylation specificity factor su... [more]
A0A024UE49_9STRA3.600e-1850.00Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A4D9CM95_9STRA4.950e-1845.92Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1V9ZBF8_9STRA9.180e-1847.83Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21672contigH-paniculata_contig21672:2046..3063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue7e-41
Seed eggNOG ortholog2880.D7G8W9
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG5161@1,KOG1896@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons2
Model size288
Cds size288
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.6738062-CDS-H-paniculata_contig21672:2045..21471622929588.6738062-CDS-H-paniculata_contig21672:2045..2147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21672 2046..2147 +
1691480925.7580173-CDS-H-paniculata_contig21672:2045..21471691480925.7580173-CDS-H-paniculata_contig21672:2045..2147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21672 2046..2147 +
1622929588.6857116-CDS-H-paniculata_contig21672:2877..30631622929588.6857116-CDS-H-paniculata_contig21672:2877..3063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21672 2878..3063 +
1691480925.7714112-CDS-H-paniculata_contig21672:2877..30631691480925.7714112-CDS-H-paniculata_contig21672:2877..3063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21672 2878..3063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21672.5726.1prot_H-paniculata_contig21672.5726.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21672 2046..3063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21672.5726.1

>prot_H-paniculata_contig21672.5726.1 ID=prot_H-paniculata_contig21672.5726.1|Name=mRNA_H-paniculata_contig21672.5726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MPQVLQYAPNAPDSRGGTKLLCQSDFHLGSRVAKLTRRRTRGNLRGGARY
CLLASTLDGGLGVILPVDERVFRRLYALQGIMSNALGHTGAANPK*
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mRNA from alignment at H-paniculata_contig21672:2046..3063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21672.5726.1 ID=mRNA_H-paniculata_contig21672.5726.1|Name=mRNA_H-paniculata_contig21672.5726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1018bp|location=Sequence derived from alignment at H-paniculata_contig21672:2046..3063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCAGGTATTACAGTACGCGCCAAACGCTCCTGATTCCCGGGGCGG
AACGAAACTTCTTTGTCAATCGGACTTCCACCTAGGATCTAGGGTAGCCA
AGGTAACTGACTGACTGGCTGGCTGACTGACTGACTGACTGACTGACTGA
CTGACTGACTGACTGACTGACTGACTGACTGACTGACTGACTGACTGACT
GACTGACTGACTGACTGACTGACTGACTGACTGACTGACTGACTGACTGA
CTGACTCGCCTGTGGGAAAACTGCGCCGCGCTTGTTTAGTTTGTGAATTT
GGTGTATGTTTGCTGTGTGTATTCGGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTTTTCCCGTGTTCGCTTTGCTATGTAGAGTAAGTAATGCGTCATCA
TCCTAAGAAACGGTTGTGAAAAATCAAGCCTGATGAAAAACAATGTATAT
ATATATATATATATAGCATCAAGAAATGGTGCTCGCCTTGTCGACCCATA
ATATTGGAATTCTCTATATGACGAAGACATGACATGATGCTGTACATAAG
CCGTGGACCTCATACCAAATTCGTTAGTAAAGACGCGTACTATTTAGCAG
AGGTTTTCATATGCGGTTGCATTTTCTTCTTTTTTTATTTTCAGTTTTTT
ACACTGCTTGGGTGTGTGCTTGTGCGTGTGCTTGTACGTATCCCTGTGCC
TGTGCCTGTGCGTCCTTCGTGTGTTTTCTTTTGCATGGTGCTTGTTTCAA
CACCAAGCCATAGCCACTTGCATCCTTTCCACACCCCTGCCCCACCCCAC
CGAACCCATTCATCCATCCATCCGATTGCCAGCTGACGCGGAGACGCACC
CGAGGAAACCTGAGAGGAGGTGCTCGGTATTGCCTCCTGGCCAGCACTTT
AGATGGAGGGTTGGGGGTCATCCTTCCCGTCGATGAACGCGTGTTTCGTA
GGCTGTACGCGCTGCAGGGGATCATGAGCAATGCGCTAGGACACACGGGC
GCCGCTAATCCCAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21672:2046..3063+

>mRNA_H-paniculata_contig21672.5726.1 ID=mRNA_H-paniculata_contig21672.5726.1|Name=mRNA_H-paniculata_contig21672.5726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig21672:2046..3063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCAGGTATTACAGTACGCGCCAAACGCTCCTGATTCCCGGGGCGG
AACGAAACTTCTTTGTCAATCGGACTTCCACCTAGGATCTAGGGTAGCCA
AGATGCCTCAGGTATTACAGTACGCGCCAAACGCTCCTGATTCCCGGGGC
GGAACGAAACTTCTTTGTCAATCGGACTTCCACCTAGGATCTAGGGTAGC
CAAGCTGACGCGGAGACGCACCCGAGGAAACCTGAGAGGAGGTGCTCGGT
ATTGCCTCCTGGCCAGCACTTTAGATGGAGGGTTGGGGGTCATCCTTCCC
GTCGATGAACGCGTGTTTCGTAGGCTGTACGCGCTGCAGGGGATCATGAG
CAATGCGCTAGGACACACGGGCGCCGCTAATCCCAAGTGACTGACGCGGA
GACGCACCCGAGGAAACCTGAGAGGAGGTGCTCGGTATTGCCTCCTGGCC
AGCACTTTAGATGGAGGGTTGGGGGTCATCCTTCCCGTCGATGAACGCGT
GTTTCGTAGGCTGTACGCGCTGCAGGGGATCATGAGCAATGCGCTAGGAC
ACACGGGCGCCGCTAATCCCAAGTGA
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