prot_H-paniculata_contig2167.5723.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2167.5723.1
Unique Nameprot_H-paniculata_contig2167.5723.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length76
Homology
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BLAST of mRNA_H-paniculata_contig2167.5723.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-7
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 0 
Query:    7 LVFCKARAGRFPYMVRVARVVLGAPISVVVIERNFSAAGPMMTSCRSSIDATWVK 61
            L + K  A  +P + RVARVV GAP S  V+ER+FS AG MMTS RS++D+ +V+
Sbjct:  608 LKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVE 662
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BLAST of mRNA_H-paniculata_contig2167.5723.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 8.510e-6
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0 
Query:    7 LVFCKARAGRFPYMVRVARVVLGAPISVVVIERNFSAAGPMMTSCRSSIDATWVK 61
            L + K  A  +P + RVARVV+GA  S  V+E +FS AG MMTS RS++D+ +V+
Sbjct:  381 LKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVE 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2167.5723.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZ82_9PHAE1.480e-752.73Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE8.510e-649.09Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 7..57
e-value: 1.4E-8
score: 34.4
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 11..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2167contigH-paniculata_contig2167:3335..3562 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2167.5723.1mRNA_H-paniculata_contig2167.5723.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2167 3112..3952 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2167.5723.1 ID=prot_H-paniculata_contig2167.5723.1|Name=mRNA_H-paniculata_contig2167.5723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MPLHHTLVFCKARAGRFPYMVRVARVVLGAPISVVVIERNFSAAGPMMTS
CRSSIDATWVKNDPVVAREQGSHSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf