mRNA_H-paniculata_contig2167.5723.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2167.5723.1
Unique NamemRNA_H-paniculata_contig2167.5723.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2167.5723.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.160e-8
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 2 
Query:  137 YGPGSE-------THEEIAREELSDFVRIENSSL-DRMPLHHTLVFCKARAGRFPYMVRVARVVLGAPISVVVIERNFSAAGPMMTSCRSSIDATWVK 406
            +GPG +       + E+ AR EL++   ++  SL   +     L + K  A  +P + RVARVV GAP S  V+ER+FS AG MMTS RS++D+ +V+
Sbjct:  565 FGPGGDEQNEEPPSFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVE 662
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BLAST of mRNA_H-paniculata_contig2167.5723.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.850e-5
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:  143 PGSE----THEEIAREELSDFVRIENSSLDR-MPLHHTLVFCKARAGRFPYMVRVARVVLGAPISVVVIERNFSAAGPMMTSCRSSIDATWVK 406
            PGS+    + E+ AR EL+    ++  SL   +     L + K  A  +P + RVARVV+GA  S  V+E +FS AG MMTS RS++D+ +V+
Sbjct:  343 PGSKEEPPSFEQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVE 435
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BLAST of mRNA_H-paniculata_contig2167.5723.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 8.180e-5
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 3 
Query:  405 KMILSLHGNKDLIPDNGPALTEDQALAAIPGRLRDSVSDLQHLHGPF 545
            +MIL LHGN DLIP++   LTE  A + IPGRL + V  L+ L G F
Sbjct:   51 EMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANPVEGLEQLDGAF 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2167.5723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZ82_9PHAE6.160e-839.80Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.850e-539.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE8.180e-553.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2167contigH-paniculata_contig2167:3112..3952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size841
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2167.5723.1prot_H-paniculata_contig2167.5723.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2167 3335..3562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.1117537-UTR-H-paniculata_contig2167:3111..33341622929588.1117537-UTR-H-paniculata_contig2167:3111..3334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2167 3112..3334 +
1691480925.4619906-UTR-H-paniculata_contig2167:3111..33341691480925.4619906-UTR-H-paniculata_contig2167:3111..3334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2167 3112..3334 +
1622929588.143862-UTR-H-paniculata_contig2167:3562..39521622929588.143862-UTR-H-paniculata_contig2167:3562..3952Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2167 3563..3952 +
1691480925.4814208-UTR-H-paniculata_contig2167:3562..39521691480925.4814208-UTR-H-paniculata_contig2167:3562..3952Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2167 3563..3952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.1277943-CDS-H-paniculata_contig2167:3334..35621622929588.1277943-CDS-H-paniculata_contig2167:3334..3562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2167 3335..3562 +
1691480925.4725618-CDS-H-paniculata_contig2167:3334..35621691480925.4725618-CDS-H-paniculata_contig2167:3334..3562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2167 3335..3562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2167.5723.1

>prot_H-paniculata_contig2167.5723.1 ID=prot_H-paniculata_contig2167.5723.1|Name=mRNA_H-paniculata_contig2167.5723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MPLHHTLVFCKARAGRFPYMVRVARVVLGAPISVVVIERNFSAAGPMMTS
CRSSIDATWVKNDPVVAREQGSHSR*
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mRNA from alignment at H-paniculata_contig2167:3112..3952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2167.5723.1 ID=mRNA_H-paniculata_contig2167.5723.1|Name=mRNA_H-paniculata_contig2167.5723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=841bp|location=Sequence derived from alignment at H-paniculata_contig2167:3112..3952+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAAAGCGAAGGGGATGGAAACGGTGGCGGTGCAAGTACGGTTTCAATA
CTTTTGCCTCTAGGCGGGGAAAGAGACGAGGCGATGCTCAGCGCGTATAC
CGACCTCGGACTGGTCCACGTCGCAGAGACTAAGATTACGGTCCCGGGAG
CGAAACACACGAGGAAATCGCAAGGGAGGAGCTGTCGGACTTCGTGCGGA
TTGAAAACTCCAGTTTAGATCGTATGCCACTCCATCACACGCTAGTATTT
TGCAAAGCGCGTGCTGGCCGCTTCCCCTACATGGTACGAGTGGCGCGTGT
GGTGCTGGGCGCTCCGATTTCGGTGGTTGTAATTGAACGGAATTTCAGCG
CCGCCGGCCCCATGATGACCTCTTGCAGAAGCTCGATCGACGCGACATGG
GTGAAAAATGATCCTGTCGTTGCACGGGAACAAGGATCTCATTCCCGATA
ACGGGCCTGCTCTTACCGAGGATCAAGCGTTGGCTGCTATTCCTGGGCGG
CTGCGAGACTCGGTCTCTGATTTACAACATCTTCACGGGCCGTTCCACAC
GAAATTGGGCAATGGAAACGGAGAGAATTGGCATGTTTTAGATATTTTAT
AGATCACGGAGCACGAAACTAGTCTATAGTTTGTATTTTGTGTGATCGGG
TTACGGCGTCTAGCTCTATGGTATCCTCGGTGCAATTGCGTTAGTGAGTA
TTCTCAGGGCAATTGCATTTGGTGTACGGTACACGCTGAGTACTCGTAGT
GTTTGCTTCGGTTAGGTGACTGTTACTCTGCCTACCTGGTTCTTAGCCGA
ACCGGGGTGGCGCCTACCCCGCAGAGGAAACTCTGTTCTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2167:3112..3952+

>mRNA_H-paniculata_contig2167.5723.1 ID=mRNA_H-paniculata_contig2167.5723.1|Name=mRNA_H-paniculata_contig2167.5723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig2167:3112..3952+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCACTCCATCACACGCTAGTATTTTGCAAAGCGCGTGCTGGCCGCTT
CCCCTACATGGTACGAGTGGCGCGTGTGGTGCTGGGCGCTCCGATTTCGG
TGGTTGTAATTGAACGGAATTTCAGCGCCGCCGGCCCCATGATGACCTCT
TGCAGAAGCTCGATCGACGCGACATGGGTGAAAAATGATCCTGTCGTTGC
ACGGGAACAAGGATCTCATTCCCGATAAATGCCACTCCATCACACGCTAG
TATTTTGCAAAGCGCGTGCTGGCCGCTTCCCCTACATGGTACGAGTGGCG
CGTGTGGTGCTGGGCGCTCCGATTTCGGTGGTTGTAATTGAACGGAATTT
CAGCGCCGCCGGCCCCATGATGACCTCTTGCAGAAGCTCGATCGACGCGA
CATGGGTGAAAAATGATCCTGTCGTTGCACGGGAACAAGGATCTCATTCC
CGATAA
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