mRNA_H-paniculata_contig21628.5711.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: D8LRW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRW0_ECTSI) HSP 1 Score: 124 bits (312), Expect = 8.500e-34 Identity = 69/128 (53.91%), Postives = 89/128 (69.53%), Query Frame = 1
Query: 1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDL-------------------ESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKDH 327
RS+ SE+VWSLSGSKN+TGT Q FCVQ DA+LLVAAIG+ E +LRS+LAD++GQ C L+ L L + G++++ R+R KK+YK+TEEELA+ SLEDCV+MRMA KDH
Sbjct: 69 RSLPSEMVWSLSGSKNITGTLQTFCVQ-EVDDADLLVAAIGIDEDDLRSVLADIKGQPCGLERLGEGLRPVDGGVGDGQQQXXXQRWQGGDASKWRERLKKLYKITEEELAVNSLEDCVVMRMAVKDH 195
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A7SA06_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SA06_NEMVE) HSP 1 Score: 56.2 bits (134), Expect = 8.950e-8 Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 13 SELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
SE++++LS + N++ +F+ F + + D ++L+A I ++ S+ A VQG ++ L + + R+ KK+YK+TE ELA SL D VI RMA KD
Sbjct: 31 SEIIFNLSPTNNISDSFRKFGL--ADGDDSVLIATISSDAQKMSSVTAFVQGNRVPVNTLSTSAD-------REFIKKIYKVTESELACGSLADAVIFRMATKD 125
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: UPI001390149F (EKC/KEOPS complex subunit TPRKB n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI001390149F) HSP 1 Score: 56.2 bits (134), Expect = 2.140e-7 Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 13 SELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
SE++++LS + N++ +F+ F + + D ++L+A I ++ S+ A VQG ++ L + + R+ KK+YK+TE ELA SL D VI RMA KD
Sbjct: 81 SEIIFNLSPTNNISDSFRKFGL--ADGDDSVLIATISSDAQKMSSVTAFVQGNRVPVNTLSTSAD-------REFIKKIYKVTESELACGSLADAVIFRMATKD 175
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A8J1T7C7_OWEFU (Ofus.G013037 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1T7C7_OWEFU) HSP 1 Score: 55.5 bits (132), Expect = 2.640e-7 Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
R+V SE+++SLS +K +T +F+ F +Q + D+ L+ I + ++ ILA + G ++DE+ S+ + S KK YK+TE EL + +L D V+ RMA K+
Sbjct: 42 RNVHSEVLYSLSPTKQITNSFKTFGIQDN--DSELVAVVIHERDVDIDGILAPIDGTRIDIDEI-SNYTNETSI------KKTYKVTEPELHIGTLLDAVLTRMATKN 140
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: M4BD14_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BD14_HYAAE) HSP 1 Score: 54.3 bits (129), Expect = 1.150e-6 Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAK 321
RS+ SELV+++SGS+N++ +F+ F V ++ +L+V I E L+ + A VQG +EL + L + + + KK+YK++E+EL ++L D V R+A K
Sbjct: 74 RSLHSELVFNMSGSRNVSESFKRFGV--NEDTTSLVVCVIDADEETLKQVEALVQGVQVPFEELGTHL----TDDNVNLIKKVYKVSEQELTQSTLTDAVTCRIATK 174
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A3M6VC21_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VC21_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 2.250e-6 Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1
Query: 1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
RS+ +ELV+++SGS+N+T +F+ F V S +L+V I E L+ + V G DEL + L S E KK YK++E+EL ++L D R+A K+
Sbjct: 74 RSLHAELVFNMSGSRNVTESFKRFGV--SNDTTSLVVCVIDADEEALKQVETLVNGTQLPFDELGTHLTS----EDVKLIKKFYKISEQELTKSTLVDAATCRIATKN 175
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A1V9Y5W6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5W6_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 3.880e-6 Identity = 35/103 (33.98%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 13 SELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAK 321
SELV+++SGS+N+T + + F + S+ LLV A E +L + + VQG ++ S +E S E + KK YK+++ EL++++L D ++ R+A K
Sbjct: 69 SELVFNMSGSRNVTDSLRRFGI--SESTTKLLVCAFDADEAKLAEMQSLVQGTLVDV----SAIEGHVSPENLAQLKKHYKISDMELSVSTLTDAIVSRIATK 165
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A2P6TIK0_CHLSO (EKC KEOPS complex subunit Tprkb n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TIK0_CHLSO) HSP 1 Score: 52.0 bits (123), Expect = 8.400e-6 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
RS+ +ELV+SLSGSK++ T + + + ++L A E++ + + V G L ELPS E + + KK K+++EELA+ SL D +MR+AA+D
Sbjct: 78 RSLHAELVFSLSGSKHIAETLGRYGINPDCR--HILAARFDALPDEVQQMRSLVAGSPAPLAELPSLAE-------QQQLKKYLKVSQEELAIGSLADAQLMRIAARD 176
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A484EHN4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHN4_BRELC) HSP 1 Score: 49.7 bits (117), Expect = 6.200e-5 Identity = 34/109 (31.19%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKDH 327
RS+ +ELV+++SGS+N++ +F+ F + S+K +++V E L+ + A+V+G +EL + L + + K YK++E EL +SL D R+A K +
Sbjct: 74 RSLHAELVFNMSGSRNVSESFKRFGI--SEKTTSIVVCVFDADEAILKEVEANVEGIQVPFEELGASL----THQDNQLIIKAYKISELELTQSSLVDAATCRIATKSY 176
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A6P7VJI3_IXOSC (EKC/KEOPS complex subunit TPRKB n=5 Tax=Ixodes TaxID=6944 RepID=A0A6P7VJI3_IXOSC) HSP 1 Score: 49.3 bits (116), Expect = 8.150e-5 Identity = 34/109 (31.19%), Postives = 68/109 (62.39%), Query Frame = 1
Query: 1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRS-ILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
RS+ SE+++ L+ +KN++ + + + A + D +++V + P+ + R+ +L V+G+ L++L S L ++ +K++K+T++ELA+ SL D V+ RMA KD
Sbjct: 72 RSILSEILYQLAPTKNISDSLKQ--LGAHENDTSVVVVLVDDPDDKHRAKLLESVRGERAPLEKL-SALSDPQAL------RKLFKITDKELAVGSLLDAVVTRMAVKD 171 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21628.5711.1 >prot_H-paniculata_contig21628.5711.1 ID=prot_H-paniculata_contig21628.5711.1|Name=mRNA_H-paniculata_contig21628.5711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSIback to top mRNA from alignment at H-paniculata_contig21628:2375..3102- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21628.5711.1 ID=mRNA_H-paniculata_contig21628.5711.1|Name=mRNA_H-paniculata_contig21628.5711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=728bp|location=Sequence derived from alignment at H-paniculata_contig21628:2375..3102- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21628:2375..3102- >mRNA_H-paniculata_contig21628.5711.1 ID=mRNA_H-paniculata_contig21628.5711.1|Name=mRNA_H-paniculata_contig21628.5711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig21628:2375..3102- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |