mRNA_H-paniculata_contig21628.5711.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21628.5711.1
Unique NamemRNA_H-paniculata_contig21628.5711.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: D8LRW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRW0_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 8.500e-34
Identity = 69/128 (53.91%), Postives = 89/128 (69.53%), Query Frame = 1
Query:    1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDL-------------------ESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKDH 327
            RS+ SE+VWSLSGSKN+TGT Q FCVQ    DA+LLVAAIG+ E +LRS+LAD++GQ C L+ L   L                   + G++++ R+R KK+YK+TEEELA+ SLEDCV+MRMA KDH
Sbjct:   69 RSLPSEMVWSLSGSKNITGTLQTFCVQ-EVDDADLLVAAIGIDEDDLRSVLADIKGQPCGLERLGEGLRPVDGGVGDGQQQXXXQRWQGGDASKWRERLKKLYKITEEELAVNSLEDCVVMRMAVKDH 195          
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A7SA06_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SA06_NEMVE)

HSP 1 Score: 56.2 bits (134), Expect = 8.950e-8
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   13 SELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
            SE++++LS + N++ +F+ F +  +  D ++L+A I     ++ S+ A VQG    ++ L +  +       R+  KK+YK+TE ELA  SL D VI RMA KD
Sbjct:   31 SEIIFNLSPTNNISDSFRKFGL--ADGDDSVLIATISSDAQKMSSVTAFVQGNRVPVNTLSTSAD-------REFIKKIYKVTESELACGSLADAVIFRMATKD 125          
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: UPI001390149F (EKC/KEOPS complex subunit TPRKB n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI001390149F)

HSP 1 Score: 56.2 bits (134), Expect = 2.140e-7
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   13 SELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
            SE++++LS + N++ +F+ F +  +  D ++L+A I     ++ S+ A VQG    ++ L +  +       R+  KK+YK+TE ELA  SL D VI RMA KD
Sbjct:   81 SEIIFNLSPTNNISDSFRKFGL--ADGDDSVLIATISSDAQKMSSVTAFVQGNRVPVNTLSTSAD-------REFIKKIYKVTESELACGSLADAVIFRMATKD 175          
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A8J1T7C7_OWEFU (Ofus.G013037 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1T7C7_OWEFU)

HSP 1 Score: 55.5 bits (132), Expect = 2.640e-7
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
            R+V SE+++SLS +K +T +F+ F +Q +  D+ L+   I   + ++  ILA + G   ++DE+ S+  +  S       KK YK+TE EL + +L D V+ RMA K+
Sbjct:   42 RNVHSEVLYSLSPTKQITNSFKTFGIQDN--DSELVAVVIHERDVDIDGILAPIDGTRIDIDEI-SNYTNETSI------KKTYKVTEPELHIGTLLDAVLTRMATKN 140          
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: M4BD14_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BD14_HYAAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.150e-6
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAK 321
            RS+ SELV+++SGS+N++ +F+ F V  ++   +L+V  I   E  L+ + A VQG     +EL + L    + +  +  KK+YK++E+EL  ++L D V  R+A K
Sbjct:   74 RSLHSELVFNMSGSRNVSESFKRFGV--NEDTTSLVVCVIDADEETLKQVEALVQGVQVPFEELGTHL----TDDNVNLIKKVYKVSEQELTQSTLTDAVTCRIATK 174          
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A3M6VC21_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VC21_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.250e-6
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
            RS+ +ELV+++SGS+N+T +F+ F V  S    +L+V  I   E  L+ +   V G     DEL + L S    E     KK YK++E+EL  ++L D    R+A K+
Sbjct:   74 RSLHAELVFNMSGSRNVTESFKRFGV--SNDTTSLVVCVIDADEEALKQVETLVNGTQLPFDELGTHLTS----EDVKLIKKFYKISEQELTKSTLVDAATCRIATKN 175          
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A1V9Y5W6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5W6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.880e-6
Identity = 35/103 (33.98%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   13 SELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAK 321
            SELV+++SGS+N+T + + F +  S+    LLV A    E +L  + + VQG   ++    S +E   S E   + KK YK+++ EL++++L D ++ R+A K
Sbjct:   69 SELVFNMSGSRNVTDSLRRFGI--SESTTKLLVCAFDADEAKLAEMQSLVQGTLVDV----SAIEGHVSPENLAQLKKHYKISDMELSVSTLTDAIVSRIATK 165          
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A2P6TIK0_CHLSO (EKC KEOPS complex subunit Tprkb n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TIK0_CHLSO)

HSP 1 Score: 52.0 bits (123), Expect = 8.400e-6
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
            RS+ +ELV+SLSGSK++  T   + +    +  ++L A       E++ + + V G    L ELPS  E       + + KK  K+++EELA+ SL D  +MR+AA+D
Sbjct:   78 RSLHAELVFSLSGSKHIAETLGRYGINPDCR--HILAARFDALPDEVQQMRSLVAGSPAPLAELPSLAE-------QQQLKKYLKVSQEELAIGSLADAQLMRIAARD 176          
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A484EHN4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHN4_BRELC)

HSP 1 Score: 49.7 bits (117), Expect = 6.200e-5
Identity = 34/109 (31.19%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKDH 327
            RS+ +ELV+++SGS+N++ +F+ F +  S+K  +++V      E  L+ + A+V+G     +EL + L    + +      K YK++E EL  +SL D    R+A K +
Sbjct:   74 RSLHAELVFNMSGSRNVSESFKRFGI--SEKTTSIVVCVFDADEAILKEVEANVEGIQVPFEELGASL----THQDNQLIIKAYKISELELTQSSLVDAATCRIATKSY 176          
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Match: A0A6P7VJI3_IXOSC (EKC/KEOPS complex subunit TPRKB n=5 Tax=Ixodes TaxID=6944 RepID=A0A6P7VJI3_IXOSC)

HSP 1 Score: 49.3 bits (116), Expect = 8.150e-5
Identity = 34/109 (31.19%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRS-ILADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCVIMRMAAKD 324
            RS+ SE+++ L+ +KN++ + +   + A + D +++V  +  P+ + R+ +L  V+G+   L++L S L   ++       +K++K+T++ELA+ SL D V+ RMA KD
Sbjct:   72 RSILSEILYQLAPTKNISDSLKQ--LGAHENDTSVVVVLVDDPDDKHRAKLLESVRGERAPLEKL-SALSDPQAL------RKLFKITDKELAVGSLLDAVVTRMAVKD 171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21628.5711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LRW0_ECTSI8.500e-3453.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A7SA06_NEMVE8.950e-835.58Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
UPI001390149F2.140e-735.58EKC/KEOPS complex subunit TPRKB n=1 Tax=Nematostel... [more]
A0A8J1T7C7_OWEFU2.640e-735.19Ofus.G013037 protein n=1 Tax=Owenia fusiformis Tax... [more]
M4BD14_HYAAE1.150e-635.51Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3M6VC21_9STRA2.250e-636.11Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A1V9Y5W6_9STRA3.880e-633.98Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2P6TIK0_CHLSO8.400e-635.19EKC KEOPS complex subunit Tprkb n=1 Tax=Chlorella ... [more]
A0A484EHN4_BRELC6.200e-531.19Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6P7VJI3_IXOSC8.150e-531.19EKC/KEOPS complex subunit TPRKB n=5 Tax=Ixodes Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21628contigH-paniculata_contig21628:2375..3102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue2.5e-26
Seed eggNOG ortholog2880.D8LRW0
Preferred nameTPRKB
KEGG rclassRC00141
KEGG koko:K08658,ko:K08869,ko:K15901
KEGG ReactionR09845
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0000408,GO:0000722,GO:0000723,GO:0002949,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032200,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090342,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.tRNA processing
EggNOG OGsKOG4066@1,KOG4066@2759
Ec32 ortholog descriptionCGI121/TPRKB
Ec32 orthologEc-08_002650.3
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01002,ko03016
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.3829274-CDS-H-paniculata_contig21628:2374..26101622929586.3829274-CDS-H-paniculata_contig21628:2374..2610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21628 2375..2610 -
1691480924.8908906-CDS-H-paniculata_contig21628:2374..26101691480924.8908906-CDS-H-paniculata_contig21628:2374..2610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21628 2375..2610 -
1622929586.39925-CDS-H-paniculata_contig21628:3008..31021622929586.39925-CDS-H-paniculata_contig21628:3008..3102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21628 3009..3102 -
1691480924.9007375-CDS-H-paniculata_contig21628:3008..31021691480924.9007375-CDS-H-paniculata_contig21628:3008..3102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21628 3009..3102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21628.5711.1prot_H-paniculata_contig21628.5711.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21628 2375..3102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21628.5711.1

>prot_H-paniculata_contig21628.5711.1 ID=prot_H-paniculata_contig21628.5711.1|Name=mRNA_H-paniculata_contig21628.5711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
RSVSSELVWSLSGSKNMTGTFQAFCVQASKKDANLLVAAIGLPETELRSI
LADVQGQTCELDELPSDLESGESTEARDRWKKMYKLTEEELALASLEDCV
IMRMAAKDH*
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mRNA from alignment at H-paniculata_contig21628:2375..3102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21628.5711.1 ID=mRNA_H-paniculata_contig21628.5711.1|Name=mRNA_H-paniculata_contig21628.5711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=728bp|location=Sequence derived from alignment at H-paniculata_contig21628:2375..3102- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATCTGTATCGTCGGAACTGGTGTGGTCGCTCTCTGGATCTAAGAACAT GACGGGCACCTTTCAAGCCTTCTGCGTGCAGGCAAGCAAGAAGGGTGTGT TTGTGTATTCGCGGGCAGGCACGCATATGGTTTTGCTCCGTCGTTATTTT CGTGTCGTGTATTGGGCTTGGTGCTCGCGGTTGGTTCTGTTATGTACATG CAGCGCACACCACTTCGCTTGAGTACAATCACAGACCAAGTCGCACACGA ATATGAACAAACCAAAATGAATAGGGAAGAAGGGTTGAATTCTTCGATTT AACATTGAAATCTGAGGTATATTAATAGAATTTTCAGTAAGTACCTAAAA AAAATTCAACTATTTTAGTTTGCATTCCGGATATTGGACTGACTCTTTGG CCATAAAAAGGTCACTGCTATTTCACTTTTTTGGGGGGGGGGATGTCTTG GTTTATTTTTCGATATCATGTGTGTTATACAGGAAGCCCAAGACGCGAAC CTTCTAGTTGCTGCGATCGGTTTACCGGAGACAGAGTTGCGTTCGATACT GGCGGATGTACAGGGACAAACATGTGAATTGGATGAGCTACCTTCTGATC TCGAGTCCGGAGAGAGCACGGAGGCTCGAGATAGATGGAAGAAAATGTAC AAGCTCACCGAAGAGGAATTAGCACTGGCCAGTTTAGAAGATTGCGTTAT TATGCGCATGGCGGCGAAGGACCACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig21628:2375..3102-

>mRNA_H-paniculata_contig21628.5711.1 ID=mRNA_H-paniculata_contig21628.5711.1|Name=mRNA_H-paniculata_contig21628.5711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig21628:2375..3102- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATCTGTATCGTCGGAACTGGTGTGGTCGCTCTCTGGATCTAAGAACAT
GACGGGCACCTTTCAAGCCTTCTGCGTGCAGGCAAGCAAGAAGGAGATCT
GTATCGTCGGAACTGGTGTGGTCGCTCTCTGGATCTAAGAACATGACGGG
CACCTTTCAAGCCTTCTGCGTGCAGGCAAGCAAGAAGGACGCGAACCTTC
TAGTTGCTGCGATCGGTTTACCGGAGACAGAGTTGCGTTCGATACTGGCG
GATGTACAGGGACAAACATGTGAATTGGATGAGCTACCTTCTGATCTCGA
GTCCGGAGAGAGCACGGAGGCTCGAGATAGATGGAAGAAAATGTACAAGC
TCACCGAAGAGGAATTAGCACTGGCCAGTTTAGAAGATTGCGTTATTATG
CGCATGGCGGCGAAGGACCACTAAACGCGAACCTTCTAGTTGCTGCGATC
GGTTTACCGGAGACAGAGTTGCGTTCGATACTGGCGGATGTACAGGGACA
AACATGTGAATTGGATGAGCTACCTTCTGATCTCGAGTCCGGAGAGAGCA
CGGAGGCTCGAGATAGATGGAAGAAAATGTACAAGCTCACCGAAGAGGAA
TTAGCACTGGCCAGTTTAGAAGATTGCGTTATTATGCGCATGGCGGCGAA
GGACCACTAA
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