mRNA_H-paniculata_contig21628.5710.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21628.5710.1
Unique NamemRNA_H-paniculata_contig21628.5710.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A6H5KBH3_9PHAE (Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.200e-20
Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFFTKILKR 271
            CWAGRGRTGLIA+CLLG LYP+++AEQ+L RVD YYRTR        G VA            G   R+SP+T EQEEQVRLFF ++L R
Sbjct:  327 CWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTR--------GTVAI-----------GKSSRVSPETPEQEEQVRLFFKQVLNR 397          
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S3AE84_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AE84_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 3.630e-14
Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFF 253
            CW GRGRTGLIAACLLG LY DM AE++LQRV  YY  R P      G+  S +             + SP+TEEQ+ QVR ++
Sbjct:    5 CWGGRGRTGLIAACLLGALYGDMEAEESLQRVQCYYDLRQPL-----GREFSAS------------RKQSPETEEQKNQVRDWY 71          
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S0LRA0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRA0_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 5.480e-12
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFF 253
            C+AGRGRTGL+AACLLG+LY  M A+ AL+RV AYYR R+         + S A DG            SP+TE Q +QVR FF
Sbjct:  260 CFAGRGRTGLVAACLLGVLYNGMKADDALERVSAYYRLRA------AFALNSRAQDGH-----------SPETELQRQQVRDFF 326          
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S2JZQ2_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZQ2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.670e-11
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMT-AEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFFTKI 262
            CW G+GR GLI+ACLLG+LYPD+  A++AL+R+ AY   RS                    G KG  Y  SP+T+ Q+ QV  F+ ++
Sbjct:   45 CWGGKGRAGLISACLLGVLYPDIKDADEALERIQAYCNVRS-------------------RGAKGVFYH-SPETDAQKGQVSEFYRRL 112          
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S1WRL8_ALECA (Protein-tyrosine-phosphatase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WRL8_ALECA)

HSP 1 Score: 56.2 bits (134), Expect = 9.370e-8
Identity = 33/81 (40.74%), Postives = 41/81 (50.62%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVR 244
            CW GRGRTG++AACLLG L+PD +A+  L  V A Y +R                D  + G    +  LSP T EQ   VR
Sbjct:   66 CWGGRGRTGVVAACLLGKLFPDRSADDCLDLVQAAYSSRG---------------DDRDVG----QLALSPQTREQRNFVR 127          
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: R1BR51_EMIHU (Protein-tyrosine-phosphatase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BR51_EMIHU)

HSP 1 Score: 56.6 bits (135), Expect = 4.020e-7
Identity = 36/84 (42.86%), Postives = 43/84 (51.19%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFF 253
            CW GRGRTG++AACLLG LY  + AE+ALQRV      R                   EAG +      SP+TE Q E VR +F
Sbjct:  373 CWGGRGRTGMVAACLLGSLYRYVGAEEALQRVQRCLSLR-------------------EAGCR------SPETEAQVEAVREWF 431          
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: K0S231_THAOC (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S231_THAOC)

HSP 1 Score: 56.2 bits (134), Expect = 5.620e-7
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFFTKILKR*G 277
            C  G GR GL+ AC+LG+LYP + A+QA++   A    R+              ++G       D+   SP+T+EQ++QVR FF K+L R G
Sbjct:  457 CGGGVGRAGLLTACVLGVLYPTLKADQAIEYCTALCHLRN--------------MNGE------DKVYHSPETDEQQQQVRDFFRKMLDREG 528          
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A813CU31_9DINO (Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CU31_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 5.190e-6
Identity = 31/86 (36.05%), Postives = 45/86 (52.33%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRL--SPDTEEQEEQVRLFF 253
            CW GRGR+G++AACLLG ++ +MTA + L+ V + Y +R                     G K D   L  SP T+EQ + V+L+ 
Sbjct:  686 CWGGRGRSGVVAACLLGSMFREMTAAECLEMVQSGYSSR---------------------GSKADVGALAKSPQTDEQRQFVKLWL 750          
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S2KKK6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KKK6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.740e-6
Identity = 29/87 (33.33%), Postives = 44/87 (50.57%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFFTKI 262
            C  G GR GL++AC++G+LY ++TA+ A+         R+                      K +++  SP+TEEQ+EQVR FF K 
Sbjct:  168 CGGGVGRAGLVSACVMGILYKNLTADAAIDYTTGLCHLRN-------------------LESKEEKHYSSPETEEQKEQVRNFFEKF 235          
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: R1E8P7_EMIHU (Protein-tyrosine-phosphatase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E8P7_EMIHU)

HSP 1 Score: 52.0 bits (123), Expect = 1.170e-5
Identity = 32/83 (38.55%), Postives = 42/83 (50.60%), Query Frame = 2
Query:    2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLF 250
            CW G+GR GL+ ACLL  LY ++ AE+AL R   Y   R+  + A                       LSP+TEEQ++QVR F
Sbjct:  156 CWGGKGRAGLVCACLLAYLY-NIGAEEALVRTQVYCSLRNQGVGAT---------------------LLSPETEEQKQQVREF 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KBH3_9PHAE1.200e-2056.67Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus Ta... [more]
A0A7S3AE84_9EUKA3.630e-1448.81Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S0LRA0_9EUKA5.480e-1250.00Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2JZQ2_9STRA6.670e-1140.91Protein-tyrosine-phosphatase n=1 Tax=Leptocylindru... [more]
A0A7S1WRL8_ALECA9.370e-840.74Protein-tyrosine-phosphatase n=1 Tax=Alexandrium c... [more]
R1BR51_EMIHU4.020e-742.86Protein-tyrosine-phosphatase n=1 Tax=Emiliania hux... [more]
K0S231_THAOC5.620e-736.96TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A813CU31_9DINO5.190e-636.05Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A... [more]
A0A7S2KKK6_9STRA8.740e-633.33Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
R1E8P7_EMIHU1.170e-538.55Protein-tyrosine-phosphatase n=2 Tax=Emiliania hux... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21628contigH-paniculata_contig21628:1211..1525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21628.5710.1prot_H-paniculata_contig21628.5710.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21628 1278..1484 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.2987063-UTR-H-paniculata_contig21628:1210..12771622929586.2987063-UTR-H-paniculata_contig21628:1210..1277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21628 1211..1277 +
1691480924.8672035-UTR-H-paniculata_contig21628:1210..12771691480924.8672035-UTR-H-paniculata_contig21628:1210..1277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21628 1211..1277 +
1622929586.3352919-UTR-H-paniculata_contig21628:1484..15251622929586.3352919-UTR-H-paniculata_contig21628:1484..1525Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21628 1485..1525 +
1691480924.8825378-UTR-H-paniculata_contig21628:1484..15251691480924.8825378-UTR-H-paniculata_contig21628:1484..1525Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21628 1485..1525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.3216033-CDS-H-paniculata_contig21628:1277..14841622929586.3216033-CDS-H-paniculata_contig21628:1277..1484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21628 1278..1484 +
1691480924.875261-CDS-H-paniculata_contig21628:1277..14841691480924.875261-CDS-H-paniculata_contig21628:1277..1484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21628 1278..1484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21628.5710.1

>prot_H-paniculata_contig21628.5710.1 ID=prot_H-paniculata_contig21628.5710.1|Name=mRNA_H-paniculata_contig21628.5710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPD
TEEQEEQVRLFFTKILKR*
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mRNA from alignment at H-paniculata_contig21628:1211..1525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21628.5710.1 ID=mRNA_H-paniculata_contig21628.5710.1|Name=mRNA_H-paniculata_contig21628.5710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig21628:1211..1525+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTGGGCGGGCAGGGGGAGAACTGGACTCATCGCCGCATGCTTGCTCG GCCTCCTGTACCCGGACATGACCGCAGAGCAAGCCTTGCAGAGAGTAGAT GCCTACTATAGGACCAGGAGTCCTCCCATCGTAGCCCCTGGCGGCAAAGT AGCGAGCTTTGCTGTTGACGGGACAGAGGCAGGGGTGAAGGGTGACCGGT ATAGGCTGTCGCCAGACACCGAGGAACAGGAGGAGCAAGTCCGCTTATTT TTCACAAAGATTTTGAAGCGTTGAGGAGGAAACTGGAAAAAACGAAAGAA GAGAGGATGACGACT
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Coding sequence (CDS) from alignment at H-paniculata_contig21628:1211..1525+

>mRNA_H-paniculata_contig21628.5710.1 ID=mRNA_H-paniculata_contig21628.5710.1|Name=mRNA_H-paniculata_contig21628.5710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig21628:1211..1525+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGCAGAGCAAGCCTTGCAGAGAGTAGATGCCTACTATAGGACCAG
GAGTCCTCCCATCGTAGCCCCTGGCGGCAAAGTAGCGAGCTTTGCTGTTG
ACGGGACAGAGGCAGGGGTGAAGGGTGACCGGTATAGGCTGTCGCCAGAC
ACCGAGGAACAGGAGGAGCAAGTCCGCTTATTTTTCACAAAGATTTTGAA
GCGTTGAATGACCGCAGAGCAAGCCTTGCAGAGAGTAGATGCCTACTATA
GGACCAGGAGTCCTCCCATCGTAGCCCCTGGCGGCAAAGTAGCGAGCTTT
GCTGTTGACGGGACAGAGGCAGGGGTGAAGGGTGACCGGTATAGGCTGTC
GCCAGACACCGAGGAACAGGAGGAGCAAGTCCGCTTATTTTTCACAAAGA
TTTTGAAGCGTTGA
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