mRNA_H-paniculata_contig21628.5710.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A6H5KBH3_9PHAE (Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH3_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.200e-20 Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFFTKILKR 271
CWAGRGRTGLIA+CLLG LYP+++AEQ+L RVD YYRTR G VA G R+SP+T EQEEQVRLFF ++L R
Sbjct: 327 CWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTR--------GTVAI-----------GKSSRVSPETPEQEEQVRLFFKQVLNR 397
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S3AE84_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AE84_9EUKA) HSP 1 Score: 72.0 bits (175), Expect = 3.630e-14 Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFF 253
CW GRGRTGLIAACLLG LY DM AE++LQRV YY R P G+ S + + SP+TEEQ+ QVR ++
Sbjct: 5 CWGGRGRTGLIAACLLGALYGDMEAEESLQRVQCYYDLRQPL-----GREFSAS------------RKQSPETEEQKNQVRDWY 71
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S0LRA0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRA0_9EUKA) HSP 1 Score: 70.1 bits (170), Expect = 5.480e-12 Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFF 253
C+AGRGRTGL+AACLLG+LY M A+ AL+RV AYYR R+ + S A DG SP+TE Q +QVR FF
Sbjct: 260 CFAGRGRTGLVAACLLGVLYNGMKADDALERVSAYYRLRA------AFALNSRAQDGH-----------SPETELQRQQVRDFF 326
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S2JZQ2_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZQ2_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 6.670e-11 Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMT-AEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFFTKI 262
CW G+GR GLI+ACLLG+LYPD+ A++AL+R+ AY RS G KG Y SP+T+ Q+ QV F+ ++
Sbjct: 45 CWGGKGRAGLISACLLGVLYPDIKDADEALERIQAYCNVRS-------------------RGAKGVFYH-SPETDAQKGQVSEFYRRL 112
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S1WRL8_ALECA (Protein-tyrosine-phosphatase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WRL8_ALECA) HSP 1 Score: 56.2 bits (134), Expect = 9.370e-8 Identity = 33/81 (40.74%), Postives = 41/81 (50.62%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVR 244
CW GRGRTG++AACLLG L+PD +A+ L V A Y +R D + G + LSP T EQ VR
Sbjct: 66 CWGGRGRTGVVAACLLGKLFPDRSADDCLDLVQAAYSSRG---------------DDRDVG----QLALSPQTREQRNFVR 127
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: R1BR51_EMIHU (Protein-tyrosine-phosphatase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BR51_EMIHU) HSP 1 Score: 56.6 bits (135), Expect = 4.020e-7 Identity = 36/84 (42.86%), Postives = 43/84 (51.19%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFF 253
CW GRGRTG++AACLLG LY + AE+ALQRV R EAG + SP+TE Q E VR +F
Sbjct: 373 CWGGRGRTGMVAACLLGSLYRYVGAEEALQRVQRCLSLR-------------------EAGCR------SPETEAQVEAVREWF 431
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: K0S231_THAOC (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S231_THAOC) HSP 1 Score: 56.2 bits (134), Expect = 5.620e-7 Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFFTKILKR*G 277
C G GR GL+ AC+LG+LYP + A+QA++ A R+ ++G D+ SP+T+EQ++QVR FF K+L R G
Sbjct: 457 CGGGVGRAGLLTACVLGVLYPTLKADQAIEYCTALCHLRN--------------MNGE------DKVYHSPETDEQQQQVRDFFRKMLDREG 528
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A813CU31_9DINO (Calmodulin n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CU31_9DINO) HSP 1 Score: 53.5 bits (127), Expect = 5.190e-6 Identity = 31/86 (36.05%), Postives = 45/86 (52.33%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRL--SPDTEEQEEQVRLFF 253
CW GRGR+G++AACLLG ++ +MTA + L+ V + Y +R G K D L SP T+EQ + V+L+
Sbjct: 686 CWGGRGRSGVVAACLLGSMFREMTAAECLEMVQSGYSSR---------------------GSKADVGALAKSPQTDEQRQFVKLWL 750
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: A0A7S2KKK6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KKK6_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 8.740e-6 Identity = 29/87 (33.33%), Postives = 44/87 (50.57%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLFFTKI 262
C G GR GL++AC++G+LY ++TA+ A+ R+ K +++ SP+TEEQ+EQVR FF K
Sbjct: 168 CGGGVGRAGLVSACVMGILYKNLTADAAIDYTTGLCHLRN-------------------LESKEEKHYSSPETEEQKEQVRNFFEKF 235
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Match: R1E8P7_EMIHU (Protein-tyrosine-phosphatase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E8P7_EMIHU) HSP 1 Score: 52.0 bits (123), Expect = 1.170e-5 Identity = 32/83 (38.55%), Postives = 42/83 (50.60%), Query Frame = 2
Query: 2 CWAGRGRTGLIAACLLGLLYPDMTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDTEEQEEQVRLF 250
CW G+GR GL+ ACLL LY ++ AE+AL R Y R+ + A LSP+TEEQ++QVR F
Sbjct: 156 CWGGKGRAGLVCACLLAYLY-NIGAEEALVRTQVYCSLRNQGVGAT---------------------LLSPETEEQKQQVREF 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21628.5710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21628.5710.1 >prot_H-paniculata_contig21628.5710.1 ID=prot_H-paniculata_contig21628.5710.1|Name=mRNA_H-paniculata_contig21628.5710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp MTAEQALQRVDAYYRTRSPPIVAPGGKVASFAVDGTEAGVKGDRYRLSPDback to top mRNA from alignment at H-paniculata_contig21628:1211..1525+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21628.5710.1 ID=mRNA_H-paniculata_contig21628.5710.1|Name=mRNA_H-paniculata_contig21628.5710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig21628:1211..1525+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21628:1211..1525+ >mRNA_H-paniculata_contig21628.5710.1 ID=mRNA_H-paniculata_contig21628.5710.1|Name=mRNA_H-paniculata_contig21628.5710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig21628:1211..1525+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |