prot_H-paniculata_contig216.5698.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig216.5698.1
Unique Nameprot_H-paniculata_contig216.5698.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length62
Homology
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BLAST of mRNA_H-paniculata_contig216.5698.1 vs. uniprot
Match: D7FNM1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.380e-16
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 0 
Query:    5 SEQQVLSLEDASARVREERDKLRATLRGEGIRGCSLQELEQLEKELKKALEGVCAERD 62
            SE +VLSLE+ +A +REERDKL+ATL GEG +G SLQELE LEK+L+KALEGVC ERD
Sbjct:   69 SEAKVLSLEEGAAALREERDKLKATLNGEGFKGRSLQELEHLEKDLRKALEGVCGERD 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig216.5698.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNM1_ECTSI3.380e-1672.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..29
NoneNo IPR availableCOILSCoilCoilcoord: 40..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig216contigH-paniculata_contig216:25579..26351 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig216.5698.1mRNA_H-paniculata_contig216.5698.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig216 25579..26351 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig216.5698.1 ID=prot_H-paniculata_contig216.5698.1|Name=mRNA_H-paniculata_contig216.5698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
ELVRSEQQVLSLEDASARVREERDKLRATLRGEGIRGCSLQELEQLEKEL
KKALEGVCAERD
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