mRNA_H-paniculata_contig216.5698.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig216.5698.1
Unique NamemRNA_H-paniculata_contig216.5698.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig216.5698.1 vs. uniprot
Match: D7FNM1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.380e-16
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   13 SEQQVLSLEDASARVREERDKLRATLRGEGIRGCSLQELEQLEKELKKALEGVCAERD 186
            SE +VLSLE+ +A +REERDKL+ATL GEG +G SLQELE LEK+L+KALEGVC ERD
Sbjct:   69 SEAKVLSLEEGAAALREERDKLKATLNGEGFKGRSLQELEHLEKDLRKALEGVCGERD 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig216.5698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNM1_ECTSI3.380e-1672.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig216contigH-paniculata_contig216:25579..26351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue8.9e-13
Seed eggNOG ortholog2880.D7FNM1
KEGG koko:K15693
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG4265@1,KOG4265@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons3
Model size188
Cds size186
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig216.5698.1prot_H-paniculata_contig216.5698.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig216 25579..26351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.587795-CDS-H-paniculata_contig216:25578..256561622929584.587795-CDS-H-paniculata_contig216:25578..25656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig216 25579..25656 -
1691480924.3100853-CDS-H-paniculata_contig216:25578..256561691480924.3100853-CDS-H-paniculata_contig216:25578..25656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig216 25579..25656 -
1622929584.6028175-CDS-H-paniculata_contig216:25965..260491622929584.6028175-CDS-H-paniculata_contig216:25965..26049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig216 25966..26049 -
1691480924.3206685-CDS-H-paniculata_contig216:25965..260491691480924.3206685-CDS-H-paniculata_contig216:25965..26049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig216 25966..26049 -
1622929584.6178648-CDS-H-paniculata_contig216:26327..263511622929584.6178648-CDS-H-paniculata_contig216:26327..26351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig216 26328..26351 -
1691480924.3292463-CDS-H-paniculata_contig216:26327..263511691480924.3292463-CDS-H-paniculata_contig216:26327..26351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig216 26328..26351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig216.5698.1

>prot_H-paniculata_contig216.5698.1 ID=prot_H-paniculata_contig216.5698.1|Name=mRNA_H-paniculata_contig216.5698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
ELVRSEQQVLSLEDASARVREERDKLRATLRGEGIRGCSLQELEQLEKEL
KKALEGVCAERD
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mRNA from alignment at H-paniculata_contig216:25579..26351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig216.5698.1 ID=mRNA_H-paniculata_contig216.5698.1|Name=mRNA_H-paniculata_contig216.5698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=773bp|location=Sequence derived from alignment at H-paniculata_contig216:25579..26351- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACTCGTGCGAAGCGAGCAACAGGTGCGTGTTCTTCCCGGCACCTCCTT
GAATATCTGTACGACCATAACACACCACCTCATTGGATTCAAGCTGTACA
CAATTTTCAACAAGTTCGTGCAGAGGCGTGAATACCGGCACCCTACGTTG
CTGCCAAACAGGCTACTAGATCCATACTCTCCCTGAGATATTTGAAAAAG
ATTGCAATTTTGCCATTGACCACATTTTCACGTCAAAAGAGTTTGCGCTG
TTTTCCTTTTTTTCGGCGATATTGTCTCATCGGGTGGTGAATGCTATTGC
AGGTTTTGAGCCTGGAGGATGCATCCGCCCGCGTGCGGGAAGAGAGGGAT
AAACTCCGAGCTACGCTCAGAGGGGAAGGAATTAGGGTATGATGATCGTG
CGAACGGCACGCGGGTACTAGCCTCTAATCTACACCTTATATTAATCATG
AGTTCAGCCCCACTAACTCTTTCTGATGTATAGAATATTGGGAATATGCT
CATTACGCGATGCGGGATGTTAAGGGTAATCGACCCAGTTCATTCGGTTC
AGGGTTGCGTTTGTTGTCCGCACCAACCCGACCGTTCCACCGCGGTTTCG
GTTCGAAATTGCCAAATTTTTTCCAGAGTGTAGACACACTCCGATATCTC
TCGCTACCTTCTTCCGTTGACTTTTTGTGGTTTATTTTGTATTAGGGTTG
CTCATTGCAGGAGCTTGAGCAGCTCGAGAAGGAACTGAAGAAGGCGCTGG
AAGGTGTTTGCGCTGAACGGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig216:25579..26351-

>mRNA_H-paniculata_contig216.5698.1 ID=mRNA_H-paniculata_contig216.5698.1|Name=mRNA_H-paniculata_contig216.5698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig216:25579..26351- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACTCGTGCGAAGCGAGCAACAGGAACTCGTGCGAAGCGAGCAACAGGT
TTTGAGCCTGGAGGATGCATCCGCCCGCGTGCGGGAAGAGAGGGATAAAC
TCCGAGCTACGCTCAGAGGGGAAGGAATTAGGGTTTTGAGCCTGGAGGAT
GCATCCGCCCGCGTGCGGGAAGAGAGGGATAAACTCCGAGCTACGCTCAG
AGGGGAAGGAATTAGGGGTTGCTCATTGCAGGAGCTTGAGCAGCTCGAGA
AGGAACTGAAGAAGGCGCTGGAAGGTGTTTGCGCTGAACGGGATGGTTGC
TCATTGCAGGAGCTTGAGCAGCTCGAGAAGGAACTGAAGAAGGCGCTGGA
AGGTGTTTGCGCTGAACGGGAT
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