prot_H-paniculata_contig21577.5689.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21577.5689.1
Unique Nameprot_H-paniculata_contig21577.5689.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length82
Homology
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: W7TL91_9STRA (Ribosome biogenesis protein bop1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL91_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.690e-28
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 0
Query:    1 RSHNGVVPPPLPPHDPLLFFFSENQERV---------KRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            ++H  V      PH P  F  ++   RV         K+L+SGCKWISSLD+HP+GDH++V SYDRRV WFDLDLSS PYKTLKYH+K  R
Sbjct:   55 KTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVR 145          
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.070e-26
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 0
Query:   16 PLLFFFSENQER---------VKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            P LF  ++ Q R         VK+LISGCKWIS +DVHPSGDH+IVGSYDRRVAWFDLDL+STPYKTLKYHTK  R
Sbjct:  486 PFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVR 561          
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.920e-26
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0
Query:   16 PLLFFFSENQER---------VKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            P LF  ++ Q R         VK+LISGCKWIS +DVHP+GDH+IVGSYDRRVAWFDLDL+STPYKTLKYHTK  R
Sbjct:  726 PFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPTGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVR 801          
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: K8YSG6_NANGC (Block of proliferation 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSG6_NANGC)

HSP 1 Score: 109 bits (272), Expect = 5.520e-26
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 0
Query:    1 RSHNGVVPPPLPPHDPLLFFFSENQERV---------KRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            ++H  V      PH P  F  ++   RV         K+L+SGCKWISSLD+HP+GDH++V SYDRRV WFDLDLSS PYKTLKYH+K  R
Sbjct:  207 KTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVR 297          
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A7S3HLF9_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLF9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.420e-26
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 0
Query:   20 FFSENQERVKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            F    Q+ VK+L+SGCKW+SS+DVHPSGDH+IVGSYDRRV WFDLDLSSTPYKTLK+H K  R
Sbjct:  714 FHLVEQKLVKKLVSGCKWLSSIDVHPSGDHVIVGSYDRRVVWFDLDLSSTPYKTLKFHEKAVR 776          
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A4D9CM67_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM67_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.380e-25
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 0
Query:    1 RSHNGVVPPPLPPHDPLLFFFSENQERV---------KRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            ++H  V      PH P  F  ++   RV         K+L+SGCKWISSLD+HP+GDH++V SYDRRV WFDLDLSS PY+TLKYH+K  R
Sbjct:  734 KTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYRTLKYHSKAVR 824          
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: B7GDR2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDR2_PHATC)

HSP 1 Score: 105 bits (261), Expect = 1.620e-24
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 0
Query:   13 PHDPLLFFFSEN---------QERVKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            P+ P LF  S+          Q  VKRL SGC+WISS+DVHPSGDH+IVGS DRR+ WFDLDLSSTPYKTLKYH +  R
Sbjct:  503 PNKPFLFVASQQHVRIYHLVKQNMVKRLASGCRWISSIDVHPSGDHLIVGSLDRRMIWFDLDLSSTPYKTLKYHERALR 581          
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A7S0CFW3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFW3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.660e-24
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 0
Query:   25 QERVKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            Q  VKRL+SGCKWIS++DVHPSGDH+IVGS DRR+ WFDLDLSSTPYKTLKYH +  R
Sbjct:  608 QNMVKRLVSGCKWISTMDVHPSGDHVIVGSLDRRMVWFDLDLSSTPYKTLKYHERAIR 665          
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A7S2KDQ6_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDQ6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.270e-24
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0
Query:   25 QERVKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            Q  VKRL+SGC+WISSLDVHPSGDH+I GS DRR+ WFDLDLSSTPYKTLKYH K  R
Sbjct:  712 QTMVKRLLSGCRWISSLDVHPSGDHVIAGSLDRRMIWFDLDLSSTPYKTLKYHEKALR 769          
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A7S3YFA3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA3_HETAK)

HSP 1 Score: 100 bits (248), Expect = 2.460e-24
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 0
Query:    1 RSHNGVVPPPLPPHDPLLFFFSENQERV---------KRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 82
            ++H  V      P  P LF  ++   RV         K++++GCKWIS++DVHP+GDH++VGSYDRRV W DLDLSS PYKTLKYH +  R
Sbjct:   53 KAHGQVQVARFHPSKPFLFVATQTAVRVYHLVKQALVKKVLTGCKWISAMDVHPTGDHVLVGSYDRRVVWCDLDLSSKPYKTLKYHARAVR 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TL91_9STRA6.690e-2854.95Ribosome biogenesis protein bop1 (Fragment) n=1 Ta... [more]
D7G698_ECTSI1.070e-2669.74Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A6H5JI55_9PHAE2.920e-2668.42Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
K8YSG6_NANGC5.520e-2654.95Block of proliferation 1 n=1 Tax=Nannochloropsis g... [more]
A0A7S3HLF9_9STRA7.420e-2674.60Ribosome biogenesis protein BOP1 homolog n=1 Tax=S... [more]
A0A4D9CM67_9STRA1.380e-2553.85Ribosome biogenesis protein BOP1 homolog n=1 Tax=N... [more]
B7GDR2_PHATC1.620e-2463.29Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S0CFW3_9STRA1.660e-2477.59Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2KDQ6_9STRA2.270e-2479.31Ribosome biogenesis protein BOP1 homolog n=1 Tax=L... [more]
A0A7S3YFA3_HETAK2.460e-2450.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 24..63
e-value: 0.0062
score: 25.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 18..82
e-value: 5.8E-25
score: 89.9
IPR028598WD repeat BOP1/Erb1PANTHERPTHR17605RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEINcoord: 24..79
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 18..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21577contigH-paniculata_contig21577:927..1172 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21577.5689.1mRNA_H-paniculata_contig21577.5689.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21577 927..1172 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21577.5689.1 ID=prot_H-paniculata_contig21577.5689.1|Name=mRNA_H-paniculata_contig21577.5689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
RSHNGVVPPPLPPHDPLLFFFSENQERVKRLISGCKWISSLDVHPSGDHI
IVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR028598BOP1/Erb1
IPR036322WD40_repeat_dom_sf