mRNA_H-paniculata_contig21577.5689.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21577.5689.1
Unique NamemRNA_H-paniculata_contig21577.5689.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: W7TL91_9STRA (Ribosome biogenesis protein bop1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL91_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.690e-28
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 RSHNGVVPPPLPPHDPLLFFFSENQERV---------KRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            ++H  V      PH P  F  ++   RV         K+L+SGCKWISSLD+HP+GDH++V SYDRRV WFDLDLSS PYKTLKYH+K  R
Sbjct:   55 KTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVR 145
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BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.070e-26
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:   46 PLLFFFSENQER---------VKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            P LF  ++ Q R         VK+LISGCKWIS +DVHPSGDH+IVGSYDRRVAWFDLDL+STPYKTLKYHTK  R
Sbjct:  486 PFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVR 561
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BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.920e-26
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:   46 PLLFFFSENQER---------VKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            P LF  ++ Q R         VK+LISGCKWIS +DVHP+GDH+IVGSYDRRVAWFDLDL+STPYKTLKYHTK  R
Sbjct:  726 PFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPTGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVR 801
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BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: K8YSG6_NANGC (Block of proliferation 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSG6_NANGC)

HSP 1 Score: 109 bits (272), Expect = 5.520e-26
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 RSHNGVVPPPLPPHDPLLFFFSENQERV---------KRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            ++H  V      PH P  F  ++   RV         K+L+SGCKWISSLD+HP+GDH++V SYDRRV WFDLDLSS PYKTLKYH+K  R
Sbjct:  207 KTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVR 297
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BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A7S3HLF9_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLF9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.420e-26
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   58 FFSENQERVKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            F    Q+ VK+L+SGCKW+SS+DVHPSGDH+IVGSYDRRV WFDLDLSSTPYKTLK+H K  R
Sbjct:  714 FHLVEQKLVKKLVSGCKWLSSIDVHPSGDHVIVGSYDRRVVWFDLDLSSTPYKTLKFHEKAVR 776
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BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A4D9CM67_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM67_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.380e-25
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 RSHNGVVPPPLPPHDPLLFFFSENQERV---------KRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            ++H  V      PH P  F  ++   RV         K+L+SGCKWISSLD+HP+GDH++V SYDRRV WFDLDLSS PY+TLKYH+K  R
Sbjct:  734 KTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYRTLKYHSKAVR 824
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BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: B7GDR2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDR2_PHATC)

HSP 1 Score: 105 bits (261), Expect = 1.620e-24
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   37 PHDPLLFFFSEN---------QERVKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            P+ P LF  S+          Q  VKRL SGC+WISS+DVHPSGDH+IVGS DRR+ WFDLDLSSTPYKTLKYH +  R
Sbjct:  503 PNKPFLFVASQQHVRIYHLVKQNMVKRLASGCRWISSIDVHPSGDHLIVGSLDRRMIWFDLDLSSTPYKTLKYHERALR 581
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BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A7S0CFW3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFW3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.660e-24
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   73 QERVKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            Q  VKRL+SGCKWIS++DVHPSGDH+IVGS DRR+ WFDLDLSSTPYKTLKYH +  R
Sbjct:  608 QNMVKRLVSGCKWISTMDVHPSGDHVIVGSLDRRMVWFDLDLSSTPYKTLKYHERAIR 665
[Close]
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A7S2KDQ6_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDQ6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.270e-24
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   73 QERVKRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            Q  VKRL+SGC+WISSLDVHPSGDH+I GS DRR+ WFDLDLSSTPYKTLKYH K  R
Sbjct:  712 QTMVKRLLSGCRWISSLDVHPSGDHVIAGSLDRRMIWFDLDLSSTPYKTLKYHEKALR 769
[Close]
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Match: A0A7S3YFA3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA3_HETAK)

HSP 1 Score: 100 bits (248), Expect = 2.460e-24
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 RSHNGVVPPPLPPHDPLLFFFSENQERV---------KRLISGCKWISSLDVHPSGDHIIVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR 246
            ++H  V      P  P LF  ++   RV         K++++GCKWIS++DVHP+GDH++VGSYDRRV W DLDLSS PYKTLKYH +  R
Sbjct:   53 KAHGQVQVARFHPSKPFLFVATQTAVRVYHLVKQALVKKVLTGCKWISAMDVHPTGDHVLVGSYDRRVVWCDLDLSSKPYKTLKYHARAVR 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21577.5689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TL91_9STRA6.690e-2854.95Ribosome biogenesis protein bop1 (Fragment) n=1 Ta... [more]
D7G698_ECTSI1.070e-2669.74Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A6H5JI55_9PHAE2.920e-2668.42Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
K8YSG6_NANGC5.520e-2654.95Block of proliferation 1 n=1 Tax=Nannochloropsis g... [more]
A0A7S3HLF9_9STRA7.420e-2674.60Ribosome biogenesis protein BOP1 homolog n=1 Tax=S... [more]
A0A4D9CM67_9STRA1.380e-2553.85Ribosome biogenesis protein BOP1 homolog n=1 Tax=N... [more]
B7GDR2_PHATC1.620e-2463.29Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S0CFW3_9STRA1.660e-2477.59Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2KDQ6_9STRA2.270e-2479.31Ribosome biogenesis protein BOP1 homolog n=1 Tax=L... [more]
A0A7S3YFA3_HETAK2.460e-2450.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21577contigH-paniculata_contig21577:927..1172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog2880.D7G698
Preferred nameERB1
KEGG koko:K14824
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000027,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0002682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007276,GO:0008150,GO:0008152,GO:0008283,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030684,GO:0030686,GO:0030687,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035206,GO:0035690,GO:0042127,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042493,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0046483,GO:0048583,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051302,GO:0051704,GO:0051716,GO:0051726,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070545,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901796,GO:1902531,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG0650@1,KOG0650@2759
Ec32 ortholog descriptionBOP1, N-terminal domain
Ec32 orthologEc-10_001070.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929583.4992611-CDS-H-paniculata_contig21577:926..11721622929583.4992611-CDS-H-paniculata_contig21577:926..1172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21577 927..1172 +
1691480923.7771385-CDS-H-paniculata_contig21577:926..11721691480923.7771385-CDS-H-paniculata_contig21577:926..1172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21577 927..1172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21577.5689.1prot_H-paniculata_contig21577.5689.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21577 927..1172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21577.5689.1

>prot_H-paniculata_contig21577.5689.1 ID=prot_H-paniculata_contig21577.5689.1|Name=mRNA_H-paniculata_contig21577.5689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
RSHNGVVPPPLPPHDPLLFFFSENQERVKRLISGCKWISSLDVHPSGDHI
IVGSYDRRVAWFDLDLSSTPYKTLKYHTKVKR
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mRNA from alignment at H-paniculata_contig21577:927..1172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21577.5689.1 ID=mRNA_H-paniculata_contig21577.5689.1|Name=mRNA_H-paniculata_contig21577.5689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig21577:927..1172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATCGCACAATGGGGTCGTCCCTCCCCCGCTGCCTCCTCATGATCCTCT
TCTTTTTTTTTTTTCTGAAAATCAGGAACGGGTTAAGCGTCTAATCAGCG
GGTGTAAGTGGATCTCGAGTTTGGATGTGCACCCGTCGGGAGATCACATT
ATTGTGGGGAGCTACGACAGGCGTGTCGCGTGGTTCGACTTGGACCTGTC
CAGCACTCCGTACAAGACCCTCAAGTACCACACTAAGGTGAAAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig21577:927..1172+

>mRNA_H-paniculata_contig21577.5689.1 ID=mRNA_H-paniculata_contig21577.5689.1|Name=mRNA_H-paniculata_contig21577.5689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig21577:927..1172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATCGCACAATGGGGTCGTCCCTCCCCCGCTGCCTCCTCATGATCCTCT
TCTTTTTTTTTTTTCTGAAAATCAGGAACGGGTTAAGCGTCTAATCAGCG
GGTGTAAGTGGATCTCGAGTTTGGATGTGCACCCGTCGGGAGATCACATT
ATTGTGGGGAGCTACGACAGGCGTGTCGCGTGGTTCGACTTGGACCTGTC
CAGCACTCCGTACAAGACCCTCAAGTACCACACTAAGGTGAAAAGGAGAT
CGCACAATGGGGTCGTCCCTCCCCCGCTGCCTCCTCATGATCCTCTTCTT
TTTTTTTTTTCTGAAAATCAGGAACGGGTTAAGCGTCTAATCAGCGGGTG
TAAGTGGATCTCGAGTTTGGATGTGCACCCGTCGGGAGATCACATTATTG
TGGGGAGCTACGACAGGCGTGTCGCGTGGTTCGACTTGGACCTGTCCAGC
ACTCCGTACAAGACCCTCAAGTACCACACTAAGGTGAAAAGG
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