mRNA_H-paniculata_contig21424.5638.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21424.5638.1
Unique NamemRNA_H-paniculata_contig21424.5638.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 4.650e-98
Identity = 141/215 (65.58%), Postives = 171/215 (79.53%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGGSPGPXXXXXXXXQPTIPE 645
            QT  E  N+YGQ+NS YPV ET+AEG ++E+K+V+STYHWGH+E+F+CNA +LPGGPD T+TQSCFN++PLDRA DD    P DP++ GR+ +DPPCRA+ETDQ++  GA   +V TAR++LP+ L+CERC +QMVYYTGNSC H GY EFNPPSWPS CAP+K DWI    G CG  D YPEEFWNCADI+ITS G P PXXXXXXXX  T PE
Sbjct:  109 QTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGPAPXXXXXXXXXXTAPE 323          
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 2.530e-97
Identity = 132/199 (66.33%), Postives = 159/199 (79.90%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGGSP 597
            QT  EG N+YGQ+NS YPVLET+AEG ++E+K+V+STYHWGH+E+F+C+ADDLP GPD  +TQSCFN+YPLDRA DD    PIDP + GR+ +DPPCRA+ETDQ +  GA  G+V TAR+QLP+ +TCERC +QM YYTGNSC H GY EFNPPSWPS CAP+K DWI    G CG  D YPEEFWNCAD++ITS G P
Sbjct:  106 QTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDGGP 304          
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 2.530e-97
Identity = 133/200 (66.50%), Postives = 161/200 (80.50%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGI-CGGDDHYPEEFWNCADIAITSGGSP 597
            +T  EG NRYGQ+NS YPVLET+AEG ++E+K+V++TYHWGH+E+F+C+ADDLP GPD  +TQSCFN+YPLDRA DD   SPIDP + GR+ +DPPCRA+ETDQ +  GA  G+V TAR+QLP+ +TCERC +QMVYYTGNSC H GY EFNPPSWPS CAP+K DWI    G  CG  D YPEEFWNCAD++ITS G P
Sbjct:   57 ETAAEGSNRYGQENSNYPVLETYAEGGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDGGP 256          
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 4.620e-96
Identity = 138/215 (64.19%), Postives = 163/215 (75.81%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGGSPGPXXXXXXXXQPTIPE 645
            QT  E  N+YG +NS YPVLET+AEG ++E K+V+STYHWGH+E+F+C+ADDLPGGPD T+TQSCFN++PLDR  DD   SPIDP++ GR+ +DPPCRA+ETDQ M  GA  G+V TAR++LP+ LTCERC +QMVYYTGNSC H GY EFNP SWPS CAP K DWI    G CG  D YPEEFWNCADI+ITS G P P         PT PE
Sbjct:  108 QTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDGDPAPSPTTVLTPAPTAPE 322          
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 5.660e-92
Identity = 127/199 (63.82%), Postives = 156/199 (78.39%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGGSP 597
            QT  EG N+YGQ+NS YPVLET+AEG ++E+K+V+STYHWGH+E+F+C+ADDLP GPD  +TQSCFN++PLDRA DD    PIDP + GR+ +DPPCRA+ETDQ +  GA  G+V TAR+QLP+ +TCERC +QM Y+  NSC H GY EFNPPSWP  CAP+K DWI    G CG  D YPEEFWNCAD++ITS G P
Sbjct:   77 QTAAEGSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADVSITSDGGP 273          
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 1.470e-91
Identity = 128/200 (64.00%), Postives = 153/200 (76.50%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGGSPG 600
            QT  EG+N+YG++N  YPVL T+AEG V+E+K+++STYHWGH+E F+C+  DLP G D  +TQSCFN YPLDRA DD    PIDP + GR+ +DPPCRA+ETDQ +  GA  G+V TARYQLPE + C+RC +QMVYYTGNSC H GY EFNP SWPS CAP+K DWI    G CG  D YPEEFWNCADI+ITS G PG
Sbjct:  113 QTAAEGDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGPG 312          
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 2.120e-90
Identity = 131/199 (65.83%), Postives = 158/199 (79.40%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGGSP 597
            QT  EG N YG +NS YPVLET+AEG ++E K+V+STYHWGH+E+F+C+A+DLPGGPD T+TQSCFN++PLDR  DD   SPIDP++ GR+ +DPPCRA+ETDQ +  GA  G+V TAR++LPE ++CERC +QMVYYTGNSC H GY EFNP SWPS CAP K DWI    G CG  D YPEEFWNCADI+ITS G P
Sbjct:  108 QTAAEGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADISITSDGDP 306          
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 4.180e-84
Identity = 120/201 (59.70%), Postives = 141/201 (70.15%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGGSPGP 603
            Q + EG N Y   N  +P+L T+ EG V+EIK+ M+ YHWGH+E F+CNAD++   PDG   Q CFN YPL RA  D + SPIDPN+PGRY+VDP CR  ETDQ+ P GA+ G V+ A YQLPE LTC+RC LQM YYTGNSC H GYEEF P SWPS CAP K DWI L+  +CG +  YPEEFW CAD AIT  G   P
Sbjct:   85 QNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMANP 284          
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 2.080e-81
Identity = 133/275 (48.36%), Postives = 157/275 (57.09%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHW-----------------------------------------------------------------------GHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITS---GGSPGP 603
            QT+ EG N YGQ+NS YPV   ++EG ++EIK+V+STYHW                                                                       GHLE F+CNA+D+   PDG +TQ CFN +PLDRA DDGDASPIDP+H GRY++DPPCRA ETDQ    GA  G+V TARY+LP  LTC RC LQMVYYTGN+C HPGY+EF+P S P  CAP KEDW+  + G+CG D  YPEEFWNCADI ITS   GG P P
Sbjct:  103 QTKAEGTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHWVRELPELSAQGFICGIAYLAFLVLVAAFAVVVFVFVVEEGEWKSAPTLYAHRAYEAVPGKYRALDYVHGGSGHLEFFICNAEDM-SDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSDEDGGGPAP 376          
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 2.610e-74
Identity = 115/198 (58.08%), Postives = 137/198 (69.19%), Query Frame = 1
Query:    1 QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAAETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGGS 594
            Q   EG N Y   N  +  L++F  G V+E+ +VM+ YHWGH E FVCN DD+   PDG  TQ CFN +PL RA DDGDASPIDPN+PGRY+VDP CR  ET+QS  + +  G  +  RY LP D+ CE C LQMVYYTGN+C H GYEEFNP SWPS CAPNK DWI L+  +CG    YPEEFW C+D ++TS GS
Sbjct:  114 QNADEGTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDD-PDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQS--SNSIEGYNIKMRYVLP-DIECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDGS 307          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21424.5638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM93_ECTSI4.650e-9865.58EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI2.530e-9766.33EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FP25_ECTSI2.530e-9766.50EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM92_ECTSI4.620e-9664.19EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KD35_9PHAE5.660e-9263.82CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LMF4_ECTSI1.470e-9164.00EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KTY6_9PHAE2.120e-9065.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4D7_ECTSI4.180e-8459.70EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JI36_9PHAE2.080e-8148.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMS9_ECTSI2.610e-7458.08EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21424contigH-paniculata_contig21424:673..2375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.3
Seed ortholog evalue1.6e-81
Seed eggNOG ortholog2880.D8LM92
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size738
Cds size738
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21424.5638.1prot_H-paniculata_contig21424.5638.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21424 673..2375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.7710907-CDS-H-paniculata_contig21424:672..7921622929577.7710907-CDS-H-paniculata_contig21424:672..792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21424 673..792 +
1691480921.5086343-CDS-H-paniculata_contig21424:672..7921691480921.5086343-CDS-H-paniculata_contig21424:672..792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21424 673..792 +
1622929577.78287-CDS-H-paniculata_contig21424:1118..14101622929577.78287-CDS-H-paniculata_contig21424:1118..1410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21424 1119..1410 +
1691480921.5185688-CDS-H-paniculata_contig21424:1118..14101691480921.5185688-CDS-H-paniculata_contig21424:1118..1410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21424 1119..1410 +
1622929577.7933693-CDS-H-paniculata_contig21424:1754..19281622929577.7933693-CDS-H-paniculata_contig21424:1754..1928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21424 1755..1928 +
1691480921.5270295-CDS-H-paniculata_contig21424:1754..19281691480921.5270295-CDS-H-paniculata_contig21424:1754..1928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21424 1755..1928 +
1622929577.810185-CDS-H-paniculata_contig21424:2223..23751622929577.810185-CDS-H-paniculata_contig21424:2223..2375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21424 2224..2375 +
1691480921.5357366-CDS-H-paniculata_contig21424:2223..23751691480921.5357366-CDS-H-paniculata_contig21424:2223..2375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21424 2224..2375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21424.5638.1

>prot_H-paniculata_contig21424.5638.1 ID=prot_H-paniculata_contig21424.5638.1|Name=mRNA_H-paniculata_contig21424.5638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
QTQPEGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNA
DDLPGGPDGTLTQSCFNKYPLDRATDDGDASPIDPNHPGRYFVDPPCRAA
ETDQSMPTGAETGEVVTARYQLPEDLTCERCTLQMVYYTGNSCHHPGYEE
FNPPSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGGSPG
PSPRPNPAPQPTIPEPEPTAPEPSPEAVSEPVSTPEPVDPTPEPVA
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mRNA from alignment at H-paniculata_contig21424:673..2375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21424.5638.1 ID=mRNA_H-paniculata_contig21424.5638.1|Name=mRNA_H-paniculata_contig21424.5638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1703bp|location=Sequence derived from alignment at H-paniculata_contig21424:673..2375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACTCAGCCAGAAGGCGAAAACAGGTACGGACAGGACAACAGCGTATA CCCCGTGCTTGAAACCTTCGCAGAGGGCTCGGTGGTGGAGATAAAGGTCG TTATGTCCACATACCACTGGGTAAGTCAGCTGCTATCTGAACATACGCAT GTAAACTGCCGCTCGTTCATGCGTTATTGGTAAAGGTGGCGTCGGTTCGA TGGGTGACAGCTCATCATGTGTTTGCCTGAACTTGTACACCTCTATTATG CTAATGTGGGTGCGGGATACCACTGATTTACTTCGTGTCTCATGGTGCAG ATTTACATCGTATTTGTTGCTGGTAGTCCTAAACCCTGGATAATCCACTC TACTGAAACCATTCATATAGAACAATCAAGTCAATGTCTGATATCCGGCT GAAGCAAATGGTCCTCCCACCCCCATTCCCGCTCACCCCACGACAGGGCC ACCTGGAAATCTTCGTCTGTAACGCCGACGACCTCCCAGGAGGGCCTGAT GGCACCCTCACCCAGAGCTGTTTCAACAAGTACCCTCTCGACAGGGCGAC CGACGACGGTGATGCCAGCCCCATTGACCCCAACCACCCTGGCCGGTACT TTGTTGATCCTCCGTGCCGCGCCGCCGAGACCGACCAGTCCATGCCTACT GGTGCCGAGACAGGGGAGGTGGTGACCGCGCGCTACCAGCTACCTGAGGA CCTGACTTGCGAACGATGCACCCTCCAGATGGTTTACTGTGAGTCAGTTC GAGCGATTTACGTCCGTGGGAGGTTGCGCGGTTTGATATTTCGGAGGTTA GAGAGACATTGGCTAATGTTCGAGTGGAGTGTACAGGGGGAAGCAGTCGG GGGTTGTGGCTATCGTGATATTGTAGGCCAGAACCGCGCGAATTCGAAAA TTAGGAGTATCCTCCCTTACCTGCAAAGAACCCACAATGGCGCATACACC ATGACAGGATATCAATAGAAGTCAAGTCCAACCACGGGCAACAAATACTT TATGTTAATGAGACAGACTTGAAAATCCTCTCCGCTCATCCTCTCCTATC TTGTCCCTCTCTGGCCCCTGCTCCAACCGTAGACACGGGAAACTCGTGCC ACCACCCGGGATACGAAGAGTTCAACCCTCCCTCGTGGCCCAGCGAGTGC GCGCCCAACAAGGAGGACTGGATCACCCTCGAGCCCGGCATATGCGGTGG TGATGACCATTACCCCGAGGAGTTCTGGAACTGTGCCGACATCGCCATCA CCTCTGGTGCGTCTTGGGTGAACTAGAACAGTCCTCGTGAGGTTATCGAA GGCGACCACATGGAGGTGGGGATGGCACCTCATACTGCCGAAGCGAACGG TGTTTTACGAGTCGTTGCGCTGTCTCGGGGTAGGTTGGAAGTGTCGTGCT GCACGAGCGCCGCGGATGTACTTCTTAATTAAGGAGTGTTCTTCACAACC ACTCAAACACAATAACTCGCTTGATGTTCCGACACTTGGCAAAACTAACC GTCTTCCGCCCCCTCTCCATTCCACCTCCACCCCTCCCGAATACTATGCA GGCGGATCCCCCGGACCCTCTCCCAGGCCCAACCCAGCCCCTCAGCCCAC GATCCCCGAGCCGGAACCGACCGCACCGGAACCATCCCCCGAGGCTGTTT CTGAACCCGTGTCGACTCCCGAACCAGTAGACCCCACGCCCGAGCCGGTA GCC
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Coding sequence (CDS) from alignment at H-paniculata_contig21424:673..2375+

>mRNA_H-paniculata_contig21424.5638.1 ID=mRNA_H-paniculata_contig21424.5638.1|Name=mRNA_H-paniculata_contig21424.5638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig21424:673..2375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACTCAGCCAGAAGGCGAAAACAGGTACGGACAGGACAACAGCGTATA
CCCCGTGCTTGAAACCTTCGCAGAGGGCTCGGTGGTGGAGATAAAGGTCG
TTATGTCCACATACCACTGGCAGACTCAGCCAGAAGGCGAAAACAGGTAC
GGACAGGACAACAGCGTATACCCCGTGCTTGAAACCTTCGCAGAGGGCTC
GGTGGTGGAGATAAAGGTCGTTATGTCCACATACCACTGGGGCCACCTGG
AAATCTTCGTCTGTAACGCCGACGACCTCCCAGGAGGGCCTGATGGCACC
CTCACCCAGAGCTGTTTCAACAAGTACCCTCTCGACAGGGCGACCGACGA
CGGTGATGCCAGCCCCATTGACCCCAACCACCCTGGCCGGTACTTTGTTG
ATCCTCCGTGCCGCGCCGCCGAGACCGACCAGTCCATGCCTACTGGTGCC
GAGACAGGGGAGGTGGTGACCGCGCGCTACCAGCTACCTGAGGACCTGAC
TTGCGAACGATGCACCCTCCAGATGGTTTACTGGCCACCTGGAAATCTTC
GTCTGTAACGCCGACGACCTCCCAGGAGGGCCTGATGGCACCCTCACCCA
GAGCTGTTTCAACAAGTACCCTCTCGACAGGGCGACCGACGACGGTGATG
CCAGCCCCATTGACCCCAACCACCCTGGCCGGTACTTTGTTGATCCTCCG
TGCCGCGCCGCCGAGACCGACCAGTCCATGCCTACTGGTGCCGAGACAGG
GGAGGTGGTGACCGCGCGCTACCAGCTACCTGAGGACCTGACTTGCGAAC
GATGCACCCTCCAGATGGTTTACTACACGGGAAACTCGTGCCACCACCCG
GGATACGAAGAGTTCAACCCTCCCTCGTGGCCCAGCGAGTGCGCGCCCAA
CAAGGAGGACTGGATCACCCTCGAGCCCGGCATATGCGGTGGTGATGACC
ATTACCCCGAGGAGTTCTGGAACTGTGCCGACATCGCCATCACCTCTGAC
ACGGGAAACTCGTGCCACCACCCGGGATACGAAGAGTTCAACCCTCCCTC
GTGGCCCAGCGAGTGCGCGCCCAACAAGGAGGACTGGATCACCCTCGAGC
CCGGCATATGCGGTGGTGATGACCATTACCCCGAGGAGTTCTGGAACTGT
GCCGACATCGCCATCACCTCTGGCGGATCCCCCGGACCCTCTCCCAGGCC
CAACCCAGCCCCTCAGCCCACGATCCCCGAGCCGGAACCGACCGCACCGG
AACCATCCCCCGAGGCTGTTTCTGAACCCGTGTCGACTCCCGAACCAGTA
GACCCCACGCCCGAGCCGGTAGCCGCGGATCCCCCGGACCCTCTCCCAGG
CCCAACCCAGCCCCTCAGCCCACGATCCCCGAGCCGGAACCGACCGCACC
GGAACCATCCCCCGAGGCTGTTTCTGAACCCGTGTCGACTCCCGAACCAG
TAGACCCCACGCCCGAGCCGGTAGCC
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