mRNA_H-paniculata_contig21388.5623.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 111 bits (277), Expect = 2.220e-27 Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 1
Query: 13 NLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
N EY+ ++G L Y +T TRPD+A AV ++ M P +E + KR+ RY+ ++G+ F GKS L G+ DADWA D++ R+ST+GYVF++N S ++WCS++Q
Sbjct: 82 NTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQ 189
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A182G509_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G509_AEDAL) HSP 1 Score: 108 bits (269), Expect = 9.120e-27 Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 25 YRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
YR ++GSLM+ +GTRPDI +A+ AR E+P +E + KR+ RYLS D G+ F + + L +VDADWA D+ DRKSTTG+ K+ + + WCSRKQ
Sbjct: 13 YRELIGSLMFLMSGTRPDICFALTYLARFQENPTQEHWQCLKRVLRYLSGTIDVGLQFSKRDDEPALSCYVDADWANDLVDRKSTTGFFIKVYGNVVQWCSRKQ 116
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A8J5GIX6_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GIX6_ZINOF) HSP 1 Score: 107 bits (266), Expect = 1.700e-26 Identity = 55/112 (49.11%), Postives = 76/112 (67.86%), Query Frame = 1
Query: 1 GRSGNLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
GR + T Y+ ++GSLMY T TRPDI +AV +R ME P KRIFRYL ++G+ F K+ DL GF D+D+A D++DRKST+GY+F ++S+AI+WCS+KQ
Sbjct: 62 GRKIDNTIYKQIIGSLMYL-TATRPDIMHAVSLISRYMESPKEIHLQAAKRIFRYLKGTIEYGL-FYKKNEKSDLIGFTDSDYAGDLDDRKSTSGYIFMISSAAISWCSKKQ 171
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A6S7KSC5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KSC5_PARCT) HSP 1 Score: 107 bits (267), Expect = 2.670e-26 Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 13 NLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
N+ EY+ ++G L Y +T TRPD+A AV ++ M P +E + KRI RY+ +FGITF K L G+ DADWA D E R+ST+GY+F+++ I+WCS+KQ
Sbjct: 122 NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQ 229
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: UPI0019007968 (secreted RxLR effector protein 161-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019007968) HSP 1 Score: 103 bits (258), Expect = 4.280e-26 Identity = 59/114 (51.75%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 1 GRSGNLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITF--GGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
G+ N T Y+ MVGSLMY +T TRPDI YAV +R ME P F KRI RYL P GI + G K N L GF D+D+ D+ DRKST GY+F L S AI+W S+KQ
Sbjct: 23 GKKVNSTIYKQMVGSLMYLTT-TRPDIMYAVSLISRFMESPTELHFLAAKRILRYLKGTPGLGILYQKGEKLN---LVGFSDSDYVGDLNDRKSTPGYIFMLGSGAISWSSKKQ 132
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT) HSP 1 Score: 110 bits (276), Expect = 5.540e-26 Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 13 NLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
N EY+ VGSL+Y S+ TRPDI +AV+ A+ +P E ++ KRIFRYL ++G+ + +N D GF DADWA D+ DRKST+GY F++N +A++W S+KQ
Sbjct: 1048 NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANP-DCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQ 1154
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 109 bits (273), Expect = 1.330e-25 Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 25 YRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
Y+ VG L+Y ST TRPDIAYAV AR DP E + KRI RYL+ D G+ + G G+ DADWA D++DRKST+GYVF+++++AI+W S+KQ
Sbjct: 276 YQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQ 379
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A8D8FPZ0_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8FPZ0_CULPI) HSP 1 Score: 103 bits (257), Expect = 2.360e-25 Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 19 TEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGH--DLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
TEY +VGSL+Y ST TRPDIA +V +R+++ P + D++ KR+ RYL D + G LEGF DADWA D DRKS +G+VF+ + I+W SRKQ
Sbjct: 2 TEYHSLVGSLLYVSTNTRPDIAASVSILSRKIQSPSQADWTELKRVVRYLVGTADHRLQLGTSEADRMSALEGFCDADWASDTSDRKSNSGFVFRFGEATISWASRKQ 109
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT) HSP 1 Score: 108 bits (271), Expect = 2.430e-25 Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 13 NLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
N E++ VGSL+Y S+ TRPDI +AV+ A+ +P E ++ KRIFRYL ++G+ + +N D GF DADWA D+ DRKST+GY F++N +A++W S+KQ
Sbjct: 434 NKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANP-DCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQ 540
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: UPI000E6FEC59 (uncharacterized protein LOC113305228 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FEC59) HSP 1 Score: 106 bits (264), Expect = 2.620e-25 Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 19 TEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
T YR +VGSL+Y T TRPDI YAV ++ ME PC + KR+ RY+ ++G+ + G S L GFVDADWA D+ DR+STTGY F + S+A++WCS+KQ
Sbjct: 100 TLYRQLVGSLIYL-TITRPDILYAVGVVSQFMEKPCVSHWIAAKRVLRYVKGTLEYGLMYTG-SKECSLHGFVDADWAGDMNDRRSTTGYCFYMGSAAVSWCSKKQ 203 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21388.5623.1 >prot_H-paniculata_contig21388.5623.1 ID=prot_H-paniculata_contig21388.5623.1|Name=mRNA_H-paniculata_contig21388.5623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp GRSGNLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKback to top mRNA from alignment at H-paniculata_contig21388:32..370+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21388.5623.1 ID=mRNA_H-paniculata_contig21388.5623.1|Name=mRNA_H-paniculata_contig21388.5623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig21388:32..370+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21388:32..370+ >mRNA_H-paniculata_contig21388.5623.1 ID=mRNA_H-paniculata_contig21388.5623.1|Name=mRNA_H-paniculata_contig21388.5623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig21388:32..370+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |