mRNA_H-paniculata_contig21388.5623.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21388.5623.1
Unique NamemRNA_H-paniculata_contig21388.5623.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 111 bits (277), Expect = 2.220e-27
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   13 NLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            N  EY+ ++G L Y +T TRPD+A AV   ++ M  P +E +   KR+ RY+    ++G+ F GKS    L G+ DADWA D++ R+ST+GYVF++N S ++WCS++Q
Sbjct:   82 NTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQ 189          
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A182G509_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G509_AEDAL)

HSP 1 Score: 108 bits (269), Expect = 9.120e-27
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   25 YRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            YR ++GSLM+  +GTRPDI +A+   AR  E+P +E +   KR+ RYLS   D G+ F  + +   L  +VDADWA D+ DRKSTTG+  K+  + + WCSRKQ
Sbjct:   13 YRELIGSLMFLMSGTRPDICFALTYLARFQENPTQEHWQCLKRVLRYLSGTIDVGLQFSKRDDEPALSCYVDADWANDLVDRKSTTGFFIKVYGNVVQWCSRKQ 116          
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A8J5GIX6_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GIX6_ZINOF)

HSP 1 Score: 107 bits (266), Expect = 1.700e-26
Identity = 55/112 (49.11%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 GRSGNLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            GR  + T Y+ ++GSLMY  T TRPDI +AV   +R ME P        KRIFRYL    ++G+ F  K+   DL GF D+D+A D++DRKST+GY+F ++S+AI+WCS+KQ
Sbjct:   62 GRKIDNTIYKQIIGSLMYL-TATRPDIMHAVSLISRYMESPKEIHLQAAKRIFRYLKGTIEYGL-FYKKNEKSDLIGFTDSDYAGDLDDRKSTSGYIFMISSAAISWCSKKQ 171          
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A6S7KSC5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KSC5_PARCT)

HSP 1 Score: 107 bits (267), Expect = 2.670e-26
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   13 NLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            N+ EY+ ++G L Y +T TRPD+A AV   ++ M  P +E +   KRI RY+    +FGITF  K     L G+ DADWA D E R+ST+GY+F+++   I+WCS+KQ
Sbjct:  122 NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQ 229          
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: UPI0019007968 (secreted RxLR effector protein 161-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019007968)

HSP 1 Score: 103 bits (258), Expect = 4.280e-26
Identity = 59/114 (51.75%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 GRSGNLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITF--GGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            G+  N T Y+ MVGSLMY +T TRPDI YAV   +R ME P    F   KRI RYL   P  GI +  G K N   L GF D+D+  D+ DRKST GY+F L S AI+W S+KQ
Sbjct:   23 GKKVNSTIYKQMVGSLMYLTT-TRPDIMYAVSLISRFMESPTELHFLAAKRILRYLKGTPGLGILYQKGEKLN---LVGFSDSDYVGDLNDRKSTPGYIFMLGSGAISWSSKKQ 132          
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 110 bits (276), Expect = 5.540e-26
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   13 NLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            N  EY+  VGSL+Y S+ TRPDI +AV+  A+   +P  E ++  KRIFRYL    ++G+ +   +N  D  GF DADWA D+ DRKST+GY F++N +A++W S+KQ
Sbjct: 1048 NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANP-DCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQ 1154          
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 109 bits (273), Expect = 1.330e-25
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   25 YRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            Y+  VG L+Y ST TRPDIAYAV   AR   DP  E +   KRI RYL+   D G+ + G        G+ DADWA D++DRKST+GYVF+++++AI+W S+KQ
Sbjct:  276 YQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQ 379          
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A8D8FPZ0_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8FPZ0_CULPI)

HSP 1 Score: 103 bits (257), Expect = 2.360e-25
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   19 TEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGH--DLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            TEY  +VGSL+Y ST TRPDIA +V   +R+++ P + D++  KR+ RYL    D  +  G         LEGF DADWA D  DRKS +G+VF+   + I+W SRKQ
Sbjct:    2 TEYHSLVGSLLYVSTNTRPDIAASVSILSRKIQSPSQADWTELKRVVRYLVGTADHRLQLGTSEADRMSALEGFCDADWASDTSDRKSNSGFVFRFGEATISWASRKQ 109          
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 108 bits (271), Expect = 2.430e-25
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   13 NLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            N  E++  VGSL+Y S+ TRPDI +AV+  A+   +P  E ++  KRIFRYL    ++G+ +   +N  D  GF DADWA D+ DRKST+GY F++N +A++W S+KQ
Sbjct:  434 NKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANP-DCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQ 540          
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Match: UPI000E6FEC59 (uncharacterized protein LOC113305228 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FEC59)

HSP 1 Score: 106 bits (264), Expect = 2.620e-25
Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   19 TEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKLNSSAINWCSRKQ 336
            T YR +VGSL+Y  T TRPDI YAV   ++ ME PC   +   KR+ RY+    ++G+ + G S    L GFVDADWA D+ DR+STTGY F + S+A++WCS+KQ
Sbjct:  100 TLYRQLVGSLIYL-TITRPDILYAVGVVSQFMEKPCVSHWIAAKRVLRYVKGTLEYGLMYTG-SKECSLHGFVDADWAGDMNDRRSTTGYCFYMGSAAVSWCSKKQ 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21388.5623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9D5L2_PARCT2.220e-2743.52Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A182G509_AEDAL9.120e-2747.12Uncharacterized protein n=2 Tax=Aedes albopictus T... [more]
A0A8J5GIX6_ZINOF1.700e-2649.11Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A6S7KSC5_PARCT2.670e-2645.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00190079684.280e-2651.75secreted RxLR effector protein 161-like n=1 Tax=Be... [more]
A0A6S7HEL0_PARCT5.540e-2647.22Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9KES8_PARCT1.330e-2550.00Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8D8FPZ0_CULPI2.360e-2546.30Copia protein (Fragment) n=1 Tax=Culex pipiens Tax... [more]
A0A7D9HZ03_PARCT2.430e-2546.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000E6FEC592.620e-2550.00uncharacterized protein LOC113305228 n=1 Tax=Papav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21388contigH-paniculata_contig21388:32..370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog67593.Physo126498
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHRW@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929575.3050113-CDS-H-paniculata_contig21388:31..3701622929575.3050113-CDS-H-paniculata_contig21388:31..370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21388 32..370 +
1691480920.337679-CDS-H-paniculata_contig21388:31..3701691480920.337679-CDS-H-paniculata_contig21388:31..370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21388 32..370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21388.5623.1prot_H-paniculata_contig21388.5623.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21388 32..370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21388.5623.1

>prot_H-paniculata_contig21388.5623.1 ID=prot_H-paniculata_contig21388.5623.1|Name=mRNA_H-paniculata_contig21388.5623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
GRSGNLTEYRGMVGSLMYTSTGTRPDIAYAVHQAARRMEDPCREDFSTCK
RIFRYLSTVPDFGITFGGKSNGHDLEGFVDADWAEDIEDRKSTTGYVFKL
NSSAINWCSRKQ*
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mRNA from alignment at H-paniculata_contig21388:32..370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21388.5623.1 ID=mRNA_H-paniculata_contig21388.5623.1|Name=mRNA_H-paniculata_contig21388.5623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig21388:32..370+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGAAGTGGCAATTTGACTGAATACAGAGGCATGGTAGGATCACTCAT GTACACCTCGACAGGAACTAGACCTGATATAGCATACGCGGTACACCAAG CAGCACGTCGTATGGAGGACCCATGTCGAGAAGACTTCAGTACATGCAAG CGCATTTTTCGTTATCTCAGTACTGTGCCTGACTTCGGCATTACGTTCGG CGGTAAGAGTAATGGTCACGATCTGGAAGGATTCGTTGATGCCGATTGGG CGGAAGATATCGAGGACCGAAAGTCCACAACAGGATACGTTTTCAAGCTG AACAGTAGTGCAATAAATTGGTGCTCTAGGAAGCAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21388:32..370+

>mRNA_H-paniculata_contig21388.5623.1 ID=mRNA_H-paniculata_contig21388.5623.1|Name=mRNA_H-paniculata_contig21388.5623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig21388:32..370+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGAAGTGGCAATTTGACTGAATACAGAGGCATGGTAGGATCACTCAT
GTACACCTCGACAGGAACTAGACCTGATATAGCATACGCGGTACACCAAG
CAGCACGTCGTATGGAGGACCCATGTCGAGAAGACTTCAGTACATGCAAG
CGCATTTTTCGTTATCTCAGTACTGTGCCTGACTTCGGCATTACGTTCGG
CGGTAAGAGTAATGGTCACGATCTGGAAGGATTCGTTGATGCCGATTGGG
CGGAAGATATCGAGGACCGAAAGTCCACAACAGGATACGTTTTCAAGCTG
AACAGTAGTGCAATAAATTGGTGCTCTAGGAAGCAATAGGGGAGAAGTGG
CAATTTGACTGAATACAGAGGCATGGTAGGATCACTCATGTACACCTCGA
CAGGAACTAGACCTGATATAGCATACGCGGTACACCAAGCAGCACGTCGT
ATGGAGGACCCATGTCGAGAAGACTTCAGTACATGCAAGCGCATTTTTCG
TTATCTCAGTACTGTGCCTGACTTCGGCATTACGTTCGGCGGTAAGAGTA
ATGGTCACGATCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATATC
GAGGACCGAAAGTCCACAACAGGATACGTTTTCAAGCTGAACAGTAGTGC
AATAAATTGGTGCTCTAGGAAGCAATAG
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