prot_H-paniculata_contig21372.5617.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21372.5617.1
Unique Nameprot_H-paniculata_contig21372.5617.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length119
Homology
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A6D2KTV0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KTV0_9BRAS)

HSP 1 Score: 89.4 bits (220), Expect = 7.470e-19
Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = 0
Query:    1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRS---GNLSEYRGMVGSLMCPSTGTRPDIAYA 119
            +YVDD+++A + + +V++ K  +     M DLG+ SR+LGI++ RNR  GT+ +SQ GY+++V+ R+   + + V TP+    K+ +           L  Y   VGS+M    GTRPDIAYA
Sbjct:    9 LYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYA 131          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: Q9XEB4_ARATH (Putative polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XEB4_ARATH)

HSP 1 Score: 89.7 bits (221), Expect = 1.800e-18
Identity = 47/123 (38.21%), Postives = 72/123 (58.54%), Query Frame = 0
Query:    1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAP---DGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 119
            VYVDD++IAG+ + +V++ K  +     M D+G+ SR+LGI++ RNR  GT+ +SQ  Y+ +V+ R+     +GV TP+    K+ A    D      +  Y   VGS+M    GTRPD+ YA
Sbjct:  683 VYVDDMLIAGKSMAEVNKVKEGLSLNFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSAVGSVMYAMIGTRPDVVYA 805          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS)

HSP 1 Score: 89.4 bits (220), Expect = 2.510e-18
Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = 0
Query:    1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRS---GNLSEYRGMVGSLMCPSTGTRPDIAYA 119
            +YVDD+++A + + +V++ K  +     M DLG+ SR+LGI++ RNR  GT+ +SQ GY+++V+ R+   + + V TP+    K+ +           L  Y   VGS+M    GTRPDIAYA
Sbjct: 1034 LYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYA 1156          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A2U1QJ52_ARTAN (Uncharacterized protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QJ52_ARTAN)

HSP 1 Score: 89.0 bits (219), Expect = 3.380e-18
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 0
Query:    1 VYVDDLVIAGR-RVKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 119
            +YVDDL+  G  +  +DE K S+     M D+G +S  LGIEV++      I ISQ GY +E+L R+G DKC  V TP+E K K    DGG + + + ++ +VGSL    T TRPDI +A
Sbjct:  760 LYVDDLIFTGNSQSMIDELKKSMTGEFEMTDIGLMSYYLGIEVKQTDEG--IFISQEGYAKEILKRFGMDKCNPVGTPIEHKAKPSKHDGGEAVDSTLFKSLVGSLRY-LTCTRPDILFA 876          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: Q9LVY5_ARATH (Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LVY5_ARATH)

HSP 1 Score: 88.6 bits (218), Expect = 4.630e-18
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = 0
Query:    2 YVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAP---DGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 119
            YVDD++IAG+ + +V++ K  +     M D+G+ SR+LGI++ RNR  GT+ +SQ  Y+ +V+ R+     +GV TP+    K+ A    D      +  Y  +VGS+M    G RPD+AYA
Sbjct:  939 YVDDMLIAGKSMAEVNKVKEGLSLHFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSVVGSVMYAMIGNRPDVAYA 1060          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 85.5 bits (210), Expect = 5.610e-17
Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 0
Query:    1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSE--------YRGMVGSLMCPSTGTRPDIAYA 119
            +YVDD++IA + + ++D  K ++     M D+G+ SR+LGI+++R+R  G + +SQ  Y+ +V+ R+   + + V TP+ G  K+ A        +SE        Y   VGS+M    GTRPDIAYA
Sbjct: 1035 LYVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVK-----EVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYA 1157          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 85.1 bits (209), Expect = 7.330e-17
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 0
Query:    1 VYVDDLVIAGRRVK-VDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 119
            VYVDDL+I    ++ V + K  ++ +  M DLG    +LG+E+ R+RP+ T+SISQ  Y  E+L R+G   C+  PTP+E  V +         +   Y+  VGSLM    GT PD+A++
Sbjct:  397 VYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKLSEAEV-DSQHYQSAVGSLMYGMIGTHPDVAHS 515          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI)

HSP 1 Score: 85.1 bits (209), Expect = 7.580e-17
Identity = 44/121 (36.36%), Postives = 74/121 (61.16%), Query Frame = 0
Query:    1 VYVDDLVIAGRRVK-VDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRS-GNLSEYRGMVGSLMCPSTGTRPDIAYA 119
            VYVDD+++ GRR++ ++ FK S   R +M D G + + LGI + R+    +  ISQ  YI+ +L R+GF+  +  P+P++ K +++  +G  S  +   ++ MVG LM  S  +R D+AYA
Sbjct:  802 VYVDDVLVFGRRLEDINSFKSSFAKRFKMKDQGEIGQFLGINIERSPDGTSFLISQAAYIKSMLARFGFEHLKPAPSPLDSKQRLVPYEGQASEADTKLFQSMVGCLMWLSQASRADLAYA 922          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 84.0 bits (206), Expect = 1.940e-16
Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 0
Query:    1 VYVDD-LVIAGRRVKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLS--EYRGMVGSLMCPSTGTRPDIAYA 119
            VYVDD L++A     +     ++  ++ + DLG    +LG+EV+R++  GTISISQ  YI EVL RYG + C+ V TP+E  +        R   L    Y+ ++GSLM    GTRPDIA+A
Sbjct: 1025 VYVDDMLMVATSERALRNAIQALGEKIELKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGLTQEESTSQREEQLQGIPYQSLIGSLMYLVQGTRPDIAFA 1146          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 84.0 bits (206), Expect = 1.950e-16
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 0
Query:    1 VYVDDLVIAGRRVK-VDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 119
            ++VDDL+I G+  + +   K  +     M DLG L   LG+ + R+  NG+ISI Q GYIR++L R+G +  + V TP+    +++   G    N+ +Y+ MVGSLM     +RPD+AYA
Sbjct: 1090 IWVDDLLIVGKNGRDIANVKGQLAGEFEMKDLGKLEYFLGMRIMRSL-NGSISIDQNGYIRQILERFGMEASKPVSTPIATGTRLVI--GETESNIKQYQAMVGSLMYAMLCSRPDLAYA 1206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2KTV0_9BRAS7.470e-1937.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q9XEB4_ARATH1.800e-1838.21Putative polyprotein n=1 Tax=Arabidopsis thaliana ... [more]
A0A6D2J0E6_9BRAS2.510e-1837.40Uncharacterized protein n=3 Tax=Microthlaspi errat... [more]
A0A2U1QJ52_ARTAN3.380e-1843.33Uncharacterized protein n=1 Tax=Artemisia annua Ta... [more]
Q9LVY5_ARATH4.630e-1837.70Copia-like retroelement pol polyprotein n=1 Tax=Ar... [more]
A0A1J3F7G4_NOCCA5.610e-1735.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C9VSW1_SPHS47.330e-1738.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U095_9BASI7.580e-1736.36Integrase catalytic domain-containing protein n=2 ... [more]
A0A293MM55_ORNER1.940e-1640.98Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A535F6U2_9CHLR1.950e-1638.33DDE-type integrase/transposase/recombinase n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..78
e-value: 1.5E-11
score: 44.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21372contigH-paniculata_contig21372:3558..3990 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21372.5617.1mRNA_H-paniculata_contig21372.5617.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21372 3558..3990 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21372.5617.1 ID=prot_H-paniculata_contig21372.5617.1|Name=mRNA_H-paniculata_contig21372.5617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
VYVDDLVIAGRRVKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGT
ISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRG
MVGSLMCPSTGTRPDIAYA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2